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Conserved domains on  [gi|22770600|gb|AAN06675|]
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MRDS1 protein [Homo sapiens]

Protein Classification

OFCC1 domain-containing protein( domain architecture ID 11238870)

OFCC1 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OFCC1 pfam15680
Orofacial cleft 1 candidate gene 1 protein; This family of proteins is found in eukaryotes. ...
 5-113 6.84e-60

Orofacial cleft 1 candidate gene 1 protein; This family of proteins is found in eukaryotes. Proteins in this family are typically between 125 and 276 amino acids in length.


:

Pssm-ID: 464798  Cd Length: 109  Bit Score: 183.88  E-value: 6.84e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22770600     5 KFQQKALKQTKQKKSKSAEFLMVKEDREATEGTGNPAFNMSSPDLSACQTAEKKVIRHDMPDRTLAAHQQKFRLPASAEP 84
Cdd:pfam15680   1 KFQQKALKQTKQKKSKSAEFLMVKEERAATEGIENPAFNMSSPDLSAHQTSEGRVIRGDRPDSTLAAHQQKLELPAPAEP 80

                          90       100
                  ....*....|....*....|....*....
gi 22770600    85 KGNEYGRNYFDPLMDEEINPRQCATEVSR 113
Cdd:pfam15680  81 RGNEYSRNYFDPLMDEEINPRQCGMEVSS 109
 
Name Accession Description Interval E-value
OFCC1 pfam15680
Orofacial cleft 1 candidate gene 1 protein; This family of proteins is found in eukaryotes. ...
 5-113 6.84e-60

Orofacial cleft 1 candidate gene 1 protein; This family of proteins is found in eukaryotes. Proteins in this family are typically between 125 and 276 amino acids in length.


Pssm-ID: 464798  Cd Length: 109  Bit Score: 183.88  E-value: 6.84e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22770600     5 KFQQKALKQTKQKKSKSAEFLMVKEDREATEGTGNPAFNMSSPDLSACQTAEKKVIRHDMPDRTLAAHQQKFRLPASAEP 84
Cdd:pfam15680   1 KFQQKALKQTKQKKSKSAEFLMVKEERAATEGIENPAFNMSSPDLSAHQTSEGRVIRGDRPDSTLAAHQQKLELPAPAEP 80

                          90       100
                  ....*....|....*....|....*....
gi 22770600    85 KGNEYGRNYFDPLMDEEINPRQCATEVSR 113
Cdd:pfam15680  81 RGNEYSRNYFDPLMDEEINPRQCGMEVSS 109
 
Name Accession Description Interval E-value
OFCC1 pfam15680
Orofacial cleft 1 candidate gene 1 protein; This family of proteins is found in eukaryotes. ...
 5-113 6.84e-60

Orofacial cleft 1 candidate gene 1 protein; This family of proteins is found in eukaryotes. Proteins in this family are typically between 125 and 276 amino acids in length.


Pssm-ID: 464798  Cd Length: 109  Bit Score: 183.88  E-value: 6.84e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 22770600     5 KFQQKALKQTKQKKSKSAEFLMVKEDREATEGTGNPAFNMSSPDLSACQTAEKKVIRHDMPDRTLAAHQQKFRLPASAEP 84
Cdd:pfam15680   1 KFQQKALKQTKQKKSKSAEFLMVKEERAATEGIENPAFNMSSPDLSAHQTSEGRVIRGDRPDSTLAAHQQKLELPAPAEP 80

                          90       100
                  ....*....|....*....|....*....
gi 22770600    85 KGNEYGRNYFDPLMDEEINPRQCATEVSR 113
Cdd:pfam15680  81 RGNEYSRNYFDPLMDEEINPRQCGMEVSS 109
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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