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Conserved domains on  [gi|113470887|gb|AAQ01802|]
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cytochrome b, partial (mitochondrion) [Elephas maximus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-34 1.38e-12

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 58.50  E-value: 1.38e-12
                         10        20        30
                 ....*....|....*....|....*....|....
gi 113470887   1 HPYIIIGQMASILYFSIILAFLPIAGMIENYLIK 34
Cdd:MTH00100 345 HPFIIIGQLASILYFLIILILMPIASLIENNLLK 378
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-34 1.38e-12

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 58.50  E-value: 1.38e-12
                         10        20        30
                 ....*....|....*....|....*....|....
gi 113470887   1 HPYIIIGQMASILYFSIILAFLPIAGMIENYLIK 34
Cdd:MTH00100 345 HPFIIIGQLASILYFLIILILMPIASLIENNLLK 378
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-34 1.38e-12

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 58.50  E-value: 1.38e-12
                         10        20        30
                 ....*....|....*....|....*....|....
gi 113470887   1 HPYIIIGQMASILYFSIILAFLPIAGMIENYLIK 34
Cdd:MTH00100 345 HPFIIIGQLASILYFLIILILMPIASLIENNLLK 378
CYTB MTH00131
cytochrome b; Provisional
 1-34 8.45e-10

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 50.42  E-value: 8.45e-10
                         10        20        30
                 ....*....|....*....|....*....|....
gi 113470887   1 HPYIIIGQMASILYFSIILAFLPIAGMIENYLIK 34
Cdd:MTH00131 345 HPFIIIGQVASVLYFSLFLVLMPLAGWLENKALE 378
CYTB MTH00119
cytochrome b; Provisional
 1-34 2.13e-09

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 49.51  E-value: 2.13e-09
                         10        20        30
                 ....*....|....*....|....*....|....
gi 113470887   1 HPYIIIGQMASILYFSIILAFLPIAGMIENYLIK 34
Cdd:MTH00119 346 HPFIIIGQLASILYFTILLILFPLLGALENKMLN 379
CYTB MTH00074
cytochrome b; Provisional
 2-34 3.78e-07

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 43.13  E-value: 3.78e-07
                         10        20        30
                 ....*....|....*....|....*....|...
gi 113470887   2 PYIIIGQMASILYFSIILAFLPIAGMIENYLIK 34
Cdd:MTH00074 347 PFIEIGQAASILYFLLFIIIIPLTGWLENKLLK 379
CYTB MTH00034
cytochrome b; Validated
 2-33 1.99e-06

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 40.84  E-value: 1.99e-06
                         10        20        30
                 ....*....|....*....|....*....|..
gi 113470887   2 PYIIIGQMASILYFSIILAFLPIAGMIENYLI 33
Cdd:MTH00034 346 PFILLGQVASVLYFSLFLFFFPLISYLENKLI 377
CYTB MTH00053
cytochrome b; Provisional
 2-34 2.02e-05

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 38.15  E-value: 2.02e-05
                         10        20        30
                 ....*....|....*....|....*....|...
gi 113470887   2 PYIIIGQMASILYFSIILAFLPIAGMIENYLIK 34
Cdd:MTH00053 347 PYILIGQIASIFYFAYFLILMPLAGYLENKLLK 379
CYTB MTH00022
cytochrome b; Validated
 2-34 1.36e-04

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 35.83  E-value: 1.36e-04
                         10        20        30
                 ....*....|....*....|....*....|...
gi 113470887   2 PYIIIGQMASILYFSIILAFLPIAGMIENYLIK 34
Cdd:MTH00022 345 PFILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
CYTB MTH00191
cytochrome b; Provisional
 1-24 8.78e-04

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 33.35  E-value: 8.78e-04
                         10        20
                 ....*....|....*....|....
gi 113470887   1 HPYIIIGQMASILYFSIILAFLPI 24
Cdd:MTH00191 342 DPFILLGQISSFLYFFLFLLLFPL 365
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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