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Concise Results
Standard Results
Full Results
photosystem I P700 apoprotein A1, partial (chloroplast) [Dictyota pardalis]
Protein Classification
photosystem I psaA/psaB family protein ( domain architecture ID 954 )
photosystem I psaA/psaB family protein may bind P700, the primary electron donor of PSI, which is a plastocyanin-ferredoxin oxidoreductase essential for light-driven electron transport, as well as the electron acceptors A0, A1 and FX
List of domain hits
Name
Accession
Description
Interval
E-value
psaB super family
cl08224 photosystem I P700 chlorophyll a apoprotein A2
1-510
0e+00
photosystem I P700 chlorophyll a apoprotein A2
CHL00056 :Pssm-ID: 471792
Cd Length: 750
Bit Score: 1021.21
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 1 AHDFD IQ T NS LEEISRK I F G AHFGQLSIIFLW I SGM H FHGA Y FSNY L AWL NN P VS IKPSAQVVWPIVGQEILNGDVGG N F 80
Cdd:CHL00056 53 AHDFD SH T SD LEEISRK V F S AHFGQLSIIFLW L SGM Y FHGA R FSNY E AWL SD P TH IKPSAQVVWPIVGQEILNGDVGG G F 132
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 81 Q G V QITSGFFQ L WRA E GITSE IE LY WI AIG G L IMSG LMLF G GWFHYH R AAPKL E WFQ NA ESMLNHHL S GLLGLG C LSW S G 160
Cdd:CHL00056 133 R G I QITSGFFQ I WRA S GITSE LQ LY CT AIG A L VFAA LMLF A GWFHYH K AAPKL A WFQ DV ESMLNHHL A GLLGLG S LSW A G 212
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 161 HQIH IA LPIN K LLDAGV TSQ EIPLPHEF LI NR E L MS QLYPSF E KG VA PFF S LNWSEYSDFLTF K GGLNP I TGGLWL S DIA 240
Cdd:CHL00056 213 HQIH VS LPIN Q LLDAGV DPK EIPLPHEF IL NR D L LA QLYPSF A KG LT PFF T LNWSEYSDFLTF R GGLNP V TGGLWL T DIA 292
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 241 HHHLA L AVLF I IAGHMY K TNWGIGH N LK D ILEAHKGPFTG VR H N GLYEILTTSWHAQLA I NLAM I GSL S IIVAHHMY A MP 320
Cdd:CHL00056 293 HHHLA I AVLF L IAGHMY R TNWGIGH S LK E ILEAHKGPFTG EG H K GLYEILTTSWHAQLA L NLAM L GSL T IIVAHHMY S MP 372
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 321 PYPY I ATDY A TQLSLFTHHMWIGGF C IVG G AAH G AIFMVRDY N P AIN YNNLLDRV I RHRDAIISHLNWVCIFLGFHSFGL 400
Cdd:CHL00056 373 PYPY L ATDY G TQLSLFTHHMWIGGF L IVG A AAH A AIFMVRDY D P TTR YNNLLDRV L RHRDAIISHLNWVCIFLGFHSFGL 452
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 401 YIHNDTM R ALGR AP DMFSDT G I P L R PIFAQ F IQN L H LS AP TS TAP N A LTTA S YIF GG - D I V SI G S K I A IM P MK LGTADF M 479
Cdd:CHL00056 453 YIHNDTM S ALGR PQ DMFSDT A I Q L Q PIFAQ W IQN T H AL AP GA TAP G A TAST S LTW GG g D L V AV G G K V A LL P IP LGTADF L 532
490 500 510
....*....|....*....|....*....|.
gi 37624866 480 VHHIHAFTIHVTVLILLKGVL Y AR N S K LIPD 510
Cdd:CHL00056 533 VHHIHAFTIHVTVLILLKGVL F AR S S R LIPD 563
Name
Accession
Description
Interval
E-value
psaA
CHL00056 photosystem I P700 chlorophyll a apoprotein A1
1-510
0e+00
photosystem I P700 chlorophyll a apoprotein A1
Pssm-ID: 176996
Cd Length: 750
Bit Score: 1021.21
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 1 AHDFD IQ T NS LEEISRK I F G AHFGQLSIIFLW I SGM H FHGA Y FSNY L AWL NN P VS IKPSAQVVWPIVGQEILNGDVGG N F 80
Cdd:CHL00056 53 AHDFD SH T SD LEEISRK V F S AHFGQLSIIFLW L SGM Y FHGA R FSNY E AWL SD P TH IKPSAQVVWPIVGQEILNGDVGG G F 132
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 81 Q G V QITSGFFQ L WRA E GITSE IE LY WI AIG G L IMSG LMLF G GWFHYH R AAPKL E WFQ NA ESMLNHHL S GLLGLG C LSW S G 160
Cdd:CHL00056 133 R G I QITSGFFQ I WRA S GITSE LQ LY CT AIG A L VFAA LMLF A GWFHYH K AAPKL A WFQ DV ESMLNHHL A GLLGLG S LSW A G 212
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 161 HQIH IA LPIN K LLDAGV TSQ EIPLPHEF LI NR E L MS QLYPSF E KG VA PFF S LNWSEYSDFLTF K GGLNP I TGGLWL S DIA 240
Cdd:CHL00056 213 HQIH VS LPIN Q LLDAGV DPK EIPLPHEF IL NR D L LA QLYPSF A KG LT PFF T LNWSEYSDFLTF R GGLNP V TGGLWL T DIA 292
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 241 HHHLA L AVLF I IAGHMY K TNWGIGH N LK D ILEAHKGPFTG VR H N GLYEILTTSWHAQLA I NLAM I GSL S IIVAHHMY A MP 320
Cdd:CHL00056 293 HHHLA I AVLF L IAGHMY R TNWGIGH S LK E ILEAHKGPFTG EG H K GLYEILTTSWHAQLA L NLAM L GSL T IIVAHHMY S MP 372
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 321 PYPY I ATDY A TQLSLFTHHMWIGGF C IVG G AAH G AIFMVRDY N P AIN YNNLLDRV I RHRDAIISHLNWVCIFLGFHSFGL 400
Cdd:CHL00056 373 PYPY L ATDY G TQLSLFTHHMWIGGF L IVG A AAH A AIFMVRDY D P TTR YNNLLDRV L RHRDAIISHLNWVCIFLGFHSFGL 452
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 401 YIHNDTM R ALGR AP DMFSDT G I P L R PIFAQ F IQN L H LS AP TS TAP N A LTTA S YIF GG - D I V SI G S K I A IM P MK LGTADF M 479
Cdd:CHL00056 453 YIHNDTM S ALGR PQ DMFSDT A I Q L Q PIFAQ W IQN T H AL AP GA TAP G A TAST S LTW GG g D L V AV G G K V A LL P IP LGTADF L 532
490 500 510
....*....|....*....|....*....|.
gi 37624866 480 VHHIHAFTIHVTVLILLKGVL Y AR N S K LIPD 510
Cdd:CHL00056 533 VHHIHAFTIHVTVLILLKGVL F AR S S R LIPD 563
psaA
TIGR01335 photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, ...
1-510
0e+00
photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, homologous integral membrane proteins that form a heterodimer. The heterodimer binds the electron-donating chlorophyll dimer P700, as well as chlorophyll, phylloquinone, and 4FE-4S electron acceptors. This model describes PsaA only. [Energy metabolism, Photosynthesis]
Pssm-ID: 130402 [Multi-domain]
Cd Length: 752
Bit Score: 914.73
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 1 AHDFD IQ T NS LE E ISRKIF G AHFGQLS I IF L W I SGM H FHGA Y FSNY L AWL NN P VS IKPSAQVVWPIVGQEILNGDVGG N F 80
Cdd:TIGR01335 56 AHDFD SH T SD LE D ISRKIF S AHFGQLS V IF I W L SGM Y FHGA R FSNY E AWL SD P TH IKPSAQVVWPIVGQEILNGDVGG G F 135
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 81 Q G V QITSGFFQLWRA E GIT S E IE LY WI AIGGL I M S GLMLF G GWFHYH R AAPKLEWFQN A ESMLNHHL S GLLGLG C LSW S G 160
Cdd:TIGR01335 136 H G I QITSGFFQLWRA S GIT N E LQ LY VT AIGGL V M A GLMLF A GWFHYH K AAPKLEWFQN V ESMLNHHL A GLLGLG S LSW A G 215
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 161 HQIH IA LPINKLLDAGV TSQE IPLPHEF LI NRELM S QLYPSF EK G VA PFF S LNW SE YSDFLTF K GGLNP I TGGLWLSDIA 240
Cdd:TIGR01335 216 HQIH VS LPINKLLDAGV DPKD IPLPHEF IL NRELM A QLYPSF AS G LT PFF T LNW GA YSDFLTF R GGLNP V TGGLWLSDIA 295
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 241 HHHLA L AVLFIIAGHMY K TNWGIGH NL K D ILEAHKGPFTG VR H N GLYE I LTTSWHAQLAINLAM I GSLSIIVAHHMYAMP 320
Cdd:TIGR01335 296 HHHLA I AVLFIIAGHMY R TNWGIGH SI K E ILEAHKGPFTG SG H K GLYE A LTTSWHAQLAINLAM L GSLSIIVAHHMYAMP 375
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 321 PYPY I ATDY A TQLSLFTHHMWIGGF C IVG G AAHGAIFMVRDY N P AI NYNN L LDRVIRHRDAIISHLNWVCIFLGFHSFGL 400
Cdd:TIGR01335 376 PYPY L ATDY P TQLSLFTHHMWIGGF L IVG A AAHGAIFMVRDY D P SQ NYNN V LDRVIRHRDAIISHLNWVCIFLGFHSFGL 455
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 401 YIHNDTMRALGR AP DMFSDT G I P L R P I FAQ F IQNLH LS AP TS TAPNAL T T A SY I FGG DI V SI G S K I A I MP M KLGTADFMV 480
Cdd:TIGR01335 456 YIHNDTMRALGR PQ DMFSDT A I Q L Q P V FAQ W IQNLH TL AP GN TAPNAL A T T SY A FGG EV V AV G G K V A M MP I KLGTADFMV 535
490 500 510
....*....|....*....|....*....|
gi 37624866 481 HHIHAFTIHVTVLILLKGVL Y ARNS K LIPD 510
Cdd:TIGR01335 536 HHIHAFTIHVTVLILLKGVL F ARNS R LIPD 565
PsaA
COG5701 Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem ...
1-510
0e+00
Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem I reaction center subunit A1, PsaA is part of the Pathway/BioSystem: Photosystem I
Pssm-ID: 444411
Cd Length: 755
Bit Score: 878.40
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 1 AHDFD IQ T NS LEEISRKIF G AHFG Q L SII F L W I SGM H FHGA Y FSNY L AWL NN P VSI KPSAQVVWPIVGQEILN G DVGG N F 80
Cdd:COG5701 55 AHDFD TH T SD LEEISRKIF S AHFG H L AVV F I W L SGM F FHGA R FSNY T AWL AD P TGV KPSAQVVWPIVGQEILN A DVGG G F 134
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 81 Q G V QITSG F FQ L WRA E GIT S E IE LY WI AIG G L I M SG LMLF G GWFHYH RA APKLEWFQN A ESMLNHHL S GLLGLG C L S W S G 160
Cdd:COG5701 135 H G I QITSG L FQ M WRA W GIT N E FQ LY CT AIG A L V M AA LMLF A GWFHYH KR APKLEWFQN V ESMLNHHL A GLLGLG S L A W T G 214
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 161 H Q IH IA LP I N K LLDAGV TSQE IPLPHEFL i N RE LM S QLYP S F EK GV A PFF S LNW SEY SDFLTFKGGLNP I TGGLWL S DIA 240
Cdd:COG5701 215 H L IH VS LP V N A LLDAGV AAAD IPLPHEFL - N PS LM A QLYP G F AS GV G PFF T LNW GAF SDFLTFKGGLNP V TGGLWL T DIA 293
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 241 HHHLA L AVLFIIAGHMY K TNWGIGH NL K D ILEAHKGP --- FTG VR - H N GLYE I LTTSWHAQLAINLAM I GSLSIIVAHHM 316
Cdd:COG5701 294 HHHLA I AVLFIIAGHMY R TNWGIGH SM K E ILEAHKGP pll FTG PE g H K GLYE V LTTSWHAQLAINLAM M GSLSIIVAHHM 373
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 317 YAMPPYPY I ATDY A TQLSLFTHHMWIGGF C IVG G AAH G AIFMVRDY N PA I N Y NN L LDRV I RHRDAIISHLNWVCIFLGFH 396
Cdd:COG5701 374 YAMPPYPY L ATDY P TQLSLFTHHMWIGGF L IVG A AAH A AIFMVRDY D PA V N Q NN V LDRV L RHRDAIISHLNWVCIFLGFH 453
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 397 SFGLYIHNDTMRALGR AP DMFSDT G I P L R P I FAQ F IQNLH L SAP - T S TAPNA LT T A S YI FGGD I V SI G S K I A I MP MK LGT 475
Cdd:COG5701 454 SFGLYIHNDTMRALGR PQ DMFSDT A I Q L Q P V FAQ W IQNLH A SAP g T A TAPNA GG T V S EA FGGD V V AV G G K V A M MP IP LGT 533
490 500 510
....*....|....*....|....*....|....*
gi 37624866 476 ADFM V HHIHAFTIHVTVLILLKGVL Y AR N S K LIPD 510
Cdd:COG5701 534 ADFM I HHIHAFTIHVTVLILLKGVL F AR S S R LIPD 568
PsaA_PsaB
pfam00223 Photosystem I psaA/psaB protein;
1-510
0e+00
Photosystem I psaA/psaB protein;
Pssm-ID: 459719
Cd Length: 719
Bit Score: 827.49
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 1 AHDF DIQTNSL EE I SRKIF G AHFG Q L S IIFLW I SG MH FHGA Y FSN YL AWL NN P VSI KP S A Q VVWP IV GQEILN G -- DVG G 78
Cdd:pfam00223 22 AHDF ESHDGDT EE L SRKIF S AHFG H L A IIFLW L SG NL FHGA W FSN FE AWL AD P LHV KP I A H VVWP HF GQEILN A ft DVG A 101
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 79 N F Q GVQITSG F FQ L WR AE G I T SEIE LY WI AIG G LI MSG LMLF G GW F HYH RA APKLEWF Q NAESMLNHHL S GL L GLG C L S W 158
Cdd:pfam00223 102 G F P GVQITSG L FQ W WR TI G M T TNGQ LY AG AIG L LI LAA LMLF A GW L HYH KF APKLEWF K NAESMLNHHL A GL F GLG S L A W 181
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 159 S GH Q IH I A L P INK LLDAGV TSQE IPLPH E FL i N RE LM S QLYPSF EK G VA PFF SL NW SE Y S D F LTFKGGL N P I TG G LWL S D 238
Cdd:pfam00223 182 T GH L IH V A I P ESR LLDAGV AAAD IPLPH P FL - N PD LM G QLYPSF AA G LG PFF TG NW GA Y A D I LTFKGGL H P Q TG S LWL T D 260
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 239 IAHHHLA L AVLFIIAGHMY K TN W GIGH NL K D ILEAHKGP -- FTG VR H N GLYE I L TT SWHAQL AI NLAM I GS LS IIVAHHM 316
Cdd:pfam00223 261 IAHHHLA I AVLFIIAGHMY R TN F GIGH SM K E ILEAHKGP gg FTG EG H K GLYE T L NN SWHAQL GL NLAM L GS VT IIVAHHM 340
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 317 YA M PPYPYIATDY A TQ LS LFTHH M WIGGF CI VG GA AHGAIFMVRDY N P AI N Y NN L LDRV IR HRDAIISHL N WVC I FLGFH 396
Cdd:pfam00223 341 YA L PPYPYIATDY T TQ AA LFTHH Q WIGGF LM VG AF AHGAIFMVRDY D P EV N K NN V LDRV LE HRDAIISHL S WVC L FLGFH 420
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 397 S FGLY I HNDTMRA L GR AP DMFSDT G I P L R P I FAQ F IQ ---------- NL HL SAP T STAPNA LTTA S YIF - G GD I V SI G S K 465
Cdd:pfam00223 421 T FGLY V HNDTMRA F GR PE DMFSDT A I L L E P V FAQ W IQ aahgkalygf NL LA SAP G STAPNA GAGV S DVW l P GD A V NV G G K 500
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 37624866 466 IAIM P MK LGTADF M VHHI H AF T IHVTVLILLKGVL Y AR N S K L I PD 510
Cdd:pfam00223 501 VSLF P IP LGTADF L VHHI I AF G IHVTVLILLKGVL D AR S S R L M PD 545
Name
Accession
Description
Interval
E-value
psaA
CHL00056 photosystem I P700 chlorophyll a apoprotein A1
1-510
0e+00
photosystem I P700 chlorophyll a apoprotein A1
Pssm-ID: 176996
Cd Length: 750
Bit Score: 1021.21
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 1 AHDFD IQ T NS LEEISRK I F G AHFGQLSIIFLW I SGM H FHGA Y FSNY L AWL NN P VS IKPSAQVVWPIVGQEILNGDVGG N F 80
Cdd:CHL00056 53 AHDFD SH T SD LEEISRK V F S AHFGQLSIIFLW L SGM Y FHGA R FSNY E AWL SD P TH IKPSAQVVWPIVGQEILNGDVGG G F 132
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 81 Q G V QITSGFFQ L WRA E GITSE IE LY WI AIG G L IMSG LMLF G GWFHYH R AAPKL E WFQ NA ESMLNHHL S GLLGLG C LSW S G 160
Cdd:CHL00056 133 R G I QITSGFFQ I WRA S GITSE LQ LY CT AIG A L VFAA LMLF A GWFHYH K AAPKL A WFQ DV ESMLNHHL A GLLGLG S LSW A G 212
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 161 HQIH IA LPIN K LLDAGV TSQ EIPLPHEF LI NR E L MS QLYPSF E KG VA PFF S LNWSEYSDFLTF K GGLNP I TGGLWL S DIA 240
Cdd:CHL00056 213 HQIH VS LPIN Q LLDAGV DPK EIPLPHEF IL NR D L LA QLYPSF A KG LT PFF T LNWSEYSDFLTF R GGLNP V TGGLWL T DIA 292
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 241 HHHLA L AVLF I IAGHMY K TNWGIGH N LK D ILEAHKGPFTG VR H N GLYEILTTSWHAQLA I NLAM I GSL S IIVAHHMY A MP 320
Cdd:CHL00056 293 HHHLA I AVLF L IAGHMY R TNWGIGH S LK E ILEAHKGPFTG EG H K GLYEILTTSWHAQLA L NLAM L GSL T IIVAHHMY S MP 372
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 321 PYPY I ATDY A TQLSLFTHHMWIGGF C IVG G AAH G AIFMVRDY N P AIN YNNLLDRV I RHRDAIISHLNWVCIFLGFHSFGL 400
Cdd:CHL00056 373 PYPY L ATDY G TQLSLFTHHMWIGGF L IVG A AAH A AIFMVRDY D P TTR YNNLLDRV L RHRDAIISHLNWVCIFLGFHSFGL 452
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 401 YIHNDTM R ALGR AP DMFSDT G I P L R PIFAQ F IQN L H LS AP TS TAP N A LTTA S YIF GG - D I V SI G S K I A IM P MK LGTADF M 479
Cdd:CHL00056 453 YIHNDTM S ALGR PQ DMFSDT A I Q L Q PIFAQ W IQN T H AL AP GA TAP G A TAST S LTW GG g D L V AV G G K V A LL P IP LGTADF L 532
490 500 510
....*....|....*....|....*....|.
gi 37624866 480 VHHIHAFTIHVTVLILLKGVL Y AR N S K LIPD 510
Cdd:CHL00056 533 VHHIHAFTIHVTVLILLKGVL F AR S S R LIPD 563
psaA
TIGR01335 photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, ...
1-510
0e+00
photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, homologous integral membrane proteins that form a heterodimer. The heterodimer binds the electron-donating chlorophyll dimer P700, as well as chlorophyll, phylloquinone, and 4FE-4S electron acceptors. This model describes PsaA only. [Energy metabolism, Photosynthesis]
Pssm-ID: 130402 [Multi-domain]
Cd Length: 752
Bit Score: 914.73
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 1 AHDFD IQ T NS LE E ISRKIF G AHFGQLS I IF L W I SGM H FHGA Y FSNY L AWL NN P VS IKPSAQVVWPIVGQEILNGDVGG N F 80
Cdd:TIGR01335 56 AHDFD SH T SD LE D ISRKIF S AHFGQLS V IF I W L SGM Y FHGA R FSNY E AWL SD P TH IKPSAQVVWPIVGQEILNGDVGG G F 135
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 81 Q G V QITSGFFQLWRA E GIT S E IE LY WI AIGGL I M S GLMLF G GWFHYH R AAPKLEWFQN A ESMLNHHL S GLLGLG C LSW S G 160
Cdd:TIGR01335 136 H G I QITSGFFQLWRA S GIT N E LQ LY VT AIGGL V M A GLMLF A GWFHYH K AAPKLEWFQN V ESMLNHHL A GLLGLG S LSW A G 215
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 161 HQIH IA LPINKLLDAGV TSQE IPLPHEF LI NRELM S QLYPSF EK G VA PFF S LNW SE YSDFLTF K GGLNP I TGGLWLSDIA 240
Cdd:TIGR01335 216 HQIH VS LPINKLLDAGV DPKD IPLPHEF IL NRELM A QLYPSF AS G LT PFF T LNW GA YSDFLTF R GGLNP V TGGLWLSDIA 295
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 241 HHHLA L AVLFIIAGHMY K TNWGIGH NL K D ILEAHKGPFTG VR H N GLYE I LTTSWHAQLAINLAM I GSLSIIVAHHMYAMP 320
Cdd:TIGR01335 296 HHHLA I AVLFIIAGHMY R TNWGIGH SI K E ILEAHKGPFTG SG H K GLYE A LTTSWHAQLAINLAM L GSLSIIVAHHMYAMP 375
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 321 PYPY I ATDY A TQLSLFTHHMWIGGF C IVG G AAHGAIFMVRDY N P AI NYNN L LDRVIRHRDAIISHLNWVCIFLGFHSFGL 400
Cdd:TIGR01335 376 PYPY L ATDY P TQLSLFTHHMWIGGF L IVG A AAHGAIFMVRDY D P SQ NYNN V LDRVIRHRDAIISHLNWVCIFLGFHSFGL 455
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 401 YIHNDTMRALGR AP DMFSDT G I P L R P I FAQ F IQNLH LS AP TS TAPNAL T T A SY I FGG DI V SI G S K I A I MP M KLGTADFMV 480
Cdd:TIGR01335 456 YIHNDTMRALGR PQ DMFSDT A I Q L Q P V FAQ W IQNLH TL AP GN TAPNAL A T T SY A FGG EV V AV G G K V A M MP I KLGTADFMV 535
490 500 510
....*....|....*....|....*....|
gi 37624866 481 HHIHAFTIHVTVLILLKGVL Y ARNS K LIPD 510
Cdd:TIGR01335 536 HHIHAFTIHVTVLILLKGVL F ARNS R LIPD 565
PsaA
COG5701 Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem ...
1-510
0e+00
Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem I reaction center subunit A1, PsaA is part of the Pathway/BioSystem: Photosystem I
Pssm-ID: 444411
Cd Length: 755
Bit Score: 878.40
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 1 AHDFD IQ T NS LEEISRKIF G AHFG Q L SII F L W I SGM H FHGA Y FSNY L AWL NN P VSI KPSAQVVWPIVGQEILN G DVGG N F 80
Cdd:COG5701 55 AHDFD TH T SD LEEISRKIF S AHFG H L AVV F I W L SGM F FHGA R FSNY T AWL AD P TGV KPSAQVVWPIVGQEILN A DVGG G F 134
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 81 Q G V QITSG F FQ L WRA E GIT S E IE LY WI AIG G L I M SG LMLF G GWFHYH RA APKLEWFQN A ESMLNHHL S GLLGLG C L S W S G 160
Cdd:COG5701 135 H G I QITSG L FQ M WRA W GIT N E FQ LY CT AIG A L V M AA LMLF A GWFHYH KR APKLEWFQN V ESMLNHHL A GLLGLG S L A W T G 214
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 161 H Q IH IA LP I N K LLDAGV TSQE IPLPHEFL i N RE LM S QLYP S F EK GV A PFF S LNW SEY SDFLTFKGGLNP I TGGLWL S DIA 240
Cdd:COG5701 215 H L IH VS LP V N A LLDAGV AAAD IPLPHEFL - N PS LM A QLYP G F AS GV G PFF T LNW GAF SDFLTFKGGLNP V TGGLWL T DIA 293
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 241 HHHLA L AVLFIIAGHMY K TNWGIGH NL K D ILEAHKGP --- FTG VR - H N GLYE I LTTSWHAQLAINLAM I GSLSIIVAHHM 316
Cdd:COG5701 294 HHHLA I AVLFIIAGHMY R TNWGIGH SM K E ILEAHKGP pll FTG PE g H K GLYE V LTTSWHAQLAINLAM M GSLSIIVAHHM 373
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 317 YAMPPYPY I ATDY A TQLSLFTHHMWIGGF C IVG G AAH G AIFMVRDY N PA I N Y NN L LDRV I RHRDAIISHLNWVCIFLGFH 396
Cdd:COG5701 374 YAMPPYPY L ATDY P TQLSLFTHHMWIGGF L IVG A AAH A AIFMVRDY D PA V N Q NN V LDRV L RHRDAIISHLNWVCIFLGFH 453
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 397 SFGLYIHNDTMRALGR AP DMFSDT G I P L R P I FAQ F IQNLH L SAP - T S TAPNA LT T A S YI FGGD I V SI G S K I A I MP MK LGT 475
Cdd:COG5701 454 SFGLYIHNDTMRALGR PQ DMFSDT A I Q L Q P V FAQ W IQNLH A SAP g T A TAPNA GG T V S EA FGGD V V AV G G K V A M MP IP LGT 533
490 500 510
....*....|....*....|....*....|....*
gi 37624866 476 ADFM V HHIHAFTIHVTVLILLKGVL Y AR N S K LIPD 510
Cdd:COG5701 534 ADFM I HHIHAFTIHVTVLILLKGVL F AR S S R LIPD 568
PsaA_PsaB
pfam00223 Photosystem I psaA/psaB protein;
1-510
0e+00
Photosystem I psaA/psaB protein;
Pssm-ID: 459719
Cd Length: 719
Bit Score: 827.49
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 1 AHDF DIQTNSL EE I SRKIF G AHFG Q L S IIFLW I SG MH FHGA Y FSN YL AWL NN P VSI KP S A Q VVWP IV GQEILN G -- DVG G 78
Cdd:pfam00223 22 AHDF ESHDGDT EE L SRKIF S AHFG H L A IIFLW L SG NL FHGA W FSN FE AWL AD P LHV KP I A H VVWP HF GQEILN A ft DVG A 101
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 79 N F Q GVQITSG F FQ L WR AE G I T SEIE LY WI AIG G LI MSG LMLF G GW F HYH RA APKLEWF Q NAESMLNHHL S GL L GLG C L S W 158
Cdd:pfam00223 102 G F P GVQITSG L FQ W WR TI G M T TNGQ LY AG AIG L LI LAA LMLF A GW L HYH KF APKLEWF K NAESMLNHHL A GL F GLG S L A W 181
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 159 S GH Q IH I A L P INK LLDAGV TSQE IPLPH E FL i N RE LM S QLYPSF EK G VA PFF SL NW SE Y S D F LTFKGGL N P I TG G LWL S D 238
Cdd:pfam00223 182 T GH L IH V A I P ESR LLDAGV AAAD IPLPH P FL - N PD LM G QLYPSF AA G LG PFF TG NW GA Y A D I LTFKGGL H P Q TG S LWL T D 260
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 239 IAHHHLA L AVLFIIAGHMY K TN W GIGH NL K D ILEAHKGP -- FTG VR H N GLYE I L TT SWHAQL AI NLAM I GS LS IIVAHHM 316
Cdd:pfam00223 261 IAHHHLA I AVLFIIAGHMY R TN F GIGH SM K E ILEAHKGP gg FTG EG H K GLYE T L NN SWHAQL GL NLAM L GS VT IIVAHHM 340
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 317 YA M PPYPYIATDY A TQ LS LFTHH M WIGGF CI VG GA AHGAIFMVRDY N P AI N Y NN L LDRV IR HRDAIISHL N WVC I FLGFH 396
Cdd:pfam00223 341 YA L PPYPYIATDY T TQ AA LFTHH Q WIGGF LM VG AF AHGAIFMVRDY D P EV N K NN V LDRV LE HRDAIISHL S WVC L FLGFH 420
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 397 S FGLY I HNDTMRA L GR AP DMFSDT G I P L R P I FAQ F IQ ---------- NL HL SAP T STAPNA LTTA S YIF - G GD I V SI G S K 465
Cdd:pfam00223 421 T FGLY V HNDTMRA F GR PE DMFSDT A I L L E P V FAQ W IQ aahgkalygf NL LA SAP G STAPNA GAGV S DVW l P GD A V NV G G K 500
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 37624866 466 IAIM P MK LGTADF M VHHI H AF T IHVTVLILLKGVL Y AR N S K L I PD 510
Cdd:pfam00223 501 VSLF P IP LGTADF L VHHI I AF G IHVTVLILLKGVL D AR S S R L M PD 545
psaB
CHL00054 photosystem I P700 chlorophyll a apoprotein A2
1-510
8.99e-151
photosystem I P700 chlorophyll a apoprotein A2
Pssm-ID: 176995
Cd Length: 734
Bit Score: 448.40
E-value: 8.99e-151
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 1 AHDF DIQTNSL EE - ISR KIF GA HFGQL S IIFLW I SG MH FH G A YFS N YL AW LNN P VSIK P S A QVV W - P IV GQ EILNGDVG G 78
Cdd:CHL00054 28 AHDF ESHDDIT EE r LYQ KIF AS HFGQL A IIFLW T SG NL FH V A WQG N FE AW VQD P LHVR P I A HAI W d P HF GQ PAVEAFTR G 107
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 79 NFQ G - V Q I - T SG FF Q L W RAE G ITSEIE LY WI A IGG L IM S G L M L FG GW F H YH - RAA P KLE WF Q NAES M LNHHLSGL L G LGC 155
Cdd:CHL00054 108 GAL G p V N I a Y SG VY Q W W YTI G LRTNED LY TG A LFL L FL S A L S L IA GW L H LQ p KWK P SVS WF K NAES R LNHHLSGL F G VSS 187
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 156 L S W S GH QI H I A L P INKLLDAGVTSQEIP LPH E flinrelmsqlypsfe K G VA P F F SLN W SE Y SD ---------------- 219
Cdd:CHL00054 188 L A W T GH LV H V A I P ESRGEHVRWNNFLDV LPH P ---------------- Q G LG P L F TGQ W NL Y AQ npdssshlfgtsqgag 251
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 220 -- F LTF K GG LN P I T GG LWL S DIAHHHLA L AV L F I IAGHMY K TN W GIGH NL KDILEAH KG P -- FT G VR H N GLY EILTT S W H 295
Cdd:CHL00054 252 ta I LTF L GG FH P Q T QS LWL T DIAHHHLA I AV V F L IAGHMY R TN F GIGH SM KDILEAH IP P gg RL G RG H K GLY DTINN S L H 331
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 296 A QL AIN LA MI G SLSII VA H HMY AM P P Y PY IA T D YA TQ LS L F THH MW I G GF CIV G GA AHGAIF MV RDYNP AI N YN N L L D R V 375
Cdd:CHL00054 332 F QL GLA LA SL G VITSL VA Q HMY SL P A Y AF IA Q D FT TQ AA L Y THH QY I A GF IMT G AF AHGAIF FI RDYNP EQ N ED N V L A R M 411
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 376 IR H RD AIISHL N W VCI FLGFH SF GLY I HND T M R A L G RA pdmfs DTG I PLR PIFAQ F IQ NL H ---------- LS APT S T A P 445
Cdd:CHL00054 412 LD H KE AIISHL S W ASL FLGFH TL GLY V HND V M L A F G TP ----- EKQ I LIE PIFAQ W IQ SA H gktsygfdvl LS STN S P A F 486
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 37624866 446 NA lt TA S YIFG G DIVS I GSKIAIMPMKL G TA DF M VHH IH A FTI H V T V LIL L KG V L Y AR N SKL I PD 510
Cdd:CHL00054 487 NA -- GR S IWLP G WLNA I NENSNSLFLTI G PG DF L VHH AI A LGL H T T T LIL V KG A L D AR G SKL M PD 549
PsaB
COG5702 Photosystem I reaction center subunit A2, PsaB [Energy production and conversion]; Photosystem ...
1-510
1.24e-144
Photosystem I reaction center subunit A2, PsaB [Energy production and conversion]; Photosystem I reaction center subunit A2, PsaB is part of the Pathway/BioSystem: Photosystem I
Pssm-ID: 444412
Cd Length: 741
Bit Score: 432.77
E-value: 1.24e-144
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 1 AHDF DIQTNSL EE - ISR KIF GA HFG Q L S IIFLW I SG MH FH G A YFS N YLA W LNN P VSIK P S A QVV W - P IV G QEILNG - DVG 77
Cdd:COG5702 28 AHDF ESHDGMT EE n LYQ KIF AT HFG H L A IIFLW S SG NL FH V A WQG N FEQ W IQD P LNVR P I A HAI W d P HF G KPAIEA f TQA 107
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 78 G NFQG V Q I T - SG FFQL W RAE G ITSEIE LY WIA I GG L IMSGL MLF G GW F H YH - RAA P K L E WF Q NAES M LNHHL S GL L G LGC 155
Cdd:COG5702 108 G ASNP V N I C y SG LYHW W YTI G MRTNTD LY QGS I FL L LLAAV MLF A GW L H LQ p KFR P S L A WF K NAES R LNHHL A GL F G VSS 187
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 156 L S W S GH QI H I A L P INKLLDA G VTSQEIP LPH E flinrelmsqlypsfe K G V APFF SL NW SE Y SD ---------------- 219
Cdd:COG5702 188 L A W T GH LV H V A I P ESRGQHV G WDNFLST LPH P ---------------- A G L APFF TG NW GV Y AQ npdtaghafgtsqgag 251
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 220 -- F LTF K GG LN P I T GG LWL S DIAHHHLA L AV L FIIAGHMY K TN W GIGH NL K D ILEAH K GP ------ F TG VR H N GLY EILT 291
Cdd:COG5702 252 ta I LTF L GG FH P Q T ES LWL T DIAHHHLA I AV I FIIAGHMY R TN F GIGH SI K E ILEAH Q GP grsgff K TG LG H K GLY DTIN 331
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 292 T S W H A QL AIN LA MI G SLSII VA H HMYA M PPY PY IA T DY A TQ LS L F THH MW I G GF CIV G GA AHGAIF M VRDY N P AI N YN N L 371
Cdd:COG5702 332 N S L H F QL GLA LA CL G VITSL VA Q HMYA L PPY AF IA Q DY T TQ AA L Y THH QY I A GF LMI G AF AHGAIF F VRDY D P EA N KD N V 411
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 372 L D R VIR H RD AIISHL N WV CI FLGFH SF GLY I HND TMR A L G RAPDM fsdtg I PLR P I FAQFIQ NL H ---------- LS A P T 441
Cdd:COG5702 412 L A R MLE H KE AIISHL S WV SL FLGFH TL GLY V HND VVV A F G TPEKQ ----- I LIE P V FAQFIQ AA H gkvlygidtl LS N P D 486
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 37624866 442 S T A PN A LTTASYIF - G G DIVSIGSKIAIMPMKL G TA DF M VHH IH A FTI H V T V LIL L KG V L Y AR N SKL I PD 510
Cdd:COG5702 487 S V A ST A WPNYGNVW l P G WLEAVNNGANSLFLTI G PG DF L VHH AI A LGL H T T T LIL V KG A L D AR G SKL M PD 556
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
