|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
386-789 |
4.29e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.94 E-value: 4.29e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 386 DVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEQQLKVVPRFQPISEHQT 465
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 466 REVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRkhfgaveakpelsle 545
Cdd:TIGR02168 761 AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRER--------------- 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 546 vqLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEV---QQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAI 622
Cdd:TIGR02168 826 --LESLERRIAATERRLEDLEEQIEELSEDIESLAAEIeelEELIEELESELEALLNERASLEEALALLRSELEELSEEL 903
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 623 KESDamstqdqhvlfgkfaQIIQEKEVEIDQLNEQVTKLQ---QQLKITTDNKVIEEKNELIRDLETQIEClmsdqecvK 699
Cdd:TIGR02168 904 RELE---------------SKRSELRRELEELREKLAQLElrlEGLEVRIDNLQERLSEEYSLTLEEAEAL--------E 960
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 700 RNREEEIEQLNEVIEKLQQELANIGQkTSMNA----HSLSEEADSLKHQLDVVIAEKLALEQQVETANEEmtfMKNVLKE 775
Cdd:TIGR02168 961 NKIEDDEEEARRRLKRLENKIKELGP-VNLAAieeyEELKERYDFLTAQKEDLTEAKETLEEAIEEIDRE---ARERFKD 1036
|
410
....*....|....
gi 48476349 776 TNFKMNQLTQELFS 789
Cdd:TIGR02168 1037 TFDQVNENFQRVFP 1050
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
489-801 |
2.89e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.77 E-value: 2.89e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 489 KEQLQRDIQERNEEIEKLEFRVRELE--------QALLVSADTFQKVEDRKHFGAVEAKPELSLEVQLQAERDAIDRKEK 560
Cdd:TIGR02168 174 RKETERKLERTRENLDRLEDILNELErqlkslerQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEE 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 561 EITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKE---STTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVL- 636
Cdd:TIGR02168 254 ELEELTAELQELEEKLEELRLEVSELEEEIEELQKElyaLANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLd 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 637 -----FGKFAQIIQEKEVEIDQLNEQVTKLQQQL-----KITTDNKVIEEKNELIRDLETQIECLMSDQEcvkrNREEEI 706
Cdd:TIGR02168 334 elaeeLAELEEKLEELKEELESLEAELEELEAELeelesRLEELEEQLETLRSKVAQLELQIASLNNEIE----RLEARL 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 707 EQLNEVIEKLQQELANIGQKTSMNA-HSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQ 785
Cdd:TIGR02168 410 ERLEDRRERLQQEIEELLKKLEEAElKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQA 489
|
330
....*....|....*.
gi 48476349 786 ELFSLKRERESVEKIQ 801
Cdd:TIGR02168 490 RLDSLERLQENLEGFS 505
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
206-776 |
6.50e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.50 E-value: 6.50e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 206 RLQAAVEKLLEAISETSSQLEHAKVTQTELMRESFRQKQEATESLKCQEELRERLHEESRAREQLAVELSKAEGVIDGYA 285
Cdd:COG1196 257 ELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELE 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 286 DEKTLFERQIQEKTDIIDRLEQELLCASNRLQELEAEQQQIQEERELLSRQKEAMKAEAGPVEQQL--LQETEKLMKEKL 363
Cdd:COG1196 337 EELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLeeLEEAEEALLERL 416
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 364 EVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDE--QAIDREHERDVFQ 441
Cdd:COG1196 417 ERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAEllEELAEAAARLLLL 496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 442 QEIQKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKlefRVRELEQALLVSA 521
Cdd:COG1196 497 LEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAA---AAIEYLKAAKAGR 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 522 DTFQKVEDRKHFGAVEAKPELSLEVQLQAERDAIDRKEKEITNLEEQLEQFR----EELENKNEEVQQLHMQLEIQKKES 597
Cdd:COG1196 574 ATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRtlvaARLEAALRRAVTLAGRLREVTLEG 653
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 598 TTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLFGKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTDNKVIEEK 677
Cdd:COG1196 654 EGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAE 733
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 678 NELIRDLETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQELANIGqKTSMNA----HSLSEEADSLKHQLDVVIAEKL 753
Cdd:COG1196 734 REELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALG-PVNLLAieeyEELEERYDFLSEQREDLEEARE 812
|
570 580
....*....|....*....|...
gi 48476349 754 ALEQQVETANEEmtfMKNVLKET 776
Cdd:COG1196 813 TLEEAIEEIDRE---TRERFLET 832
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
268-799 |
8.85e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 8.85e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 268 EQLAVELSKAEGVIDGYADEKTLFERQIQEKTDIIDRLEQELLCASNRLQELEAEQQQIQEERELLSRQKEAMKAEAGPV 347
Cdd:TIGR02168 249 KEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEEL 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 348 EQQL--LQETEKLMKEKLEvqcQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQE---KNTELMDLRQQNQALEKQLEKM 422
Cdd:TIGR02168 329 ESKLdeLAEELAELEEKLE---ELKEELESLEAELEELEAELEELESRLEELEEQletLRSKVAQLELQIASLNNEIERL 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 423 RKFLdeQAIDREHERDVFQQEIQKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEE 502
Cdd:TIGR02168 406 EARL--ERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERE 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 503 IEKLEFRVRELEqALLVSADTFQK-----VEDRKHFGA----------VEAKPELSLEVQLQAERDAIDRKEKEITNLE- 566
Cdd:TIGR02168 484 LAQLQARLDSLE-RLQENLEGFSEgvkalLKNQSGLSGilgvlselisVDEGYEAAIEAALGGRLQAVVVENLNAAKKAi 562
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 567 EQLEQ-------FREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKL--GLAIKESDAMSTQDQHVL- 636
Cdd:TIGR02168 563 AFLKQnelgrvtFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlgGVLVVDDLDNALELAKKLr 642
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 637 ----------------------FGKFAQIIQEKEVEIDQLNEQVTKLQQQLKIT--------TDNKVIEEKNELIRDLET 686
Cdd:TIGR02168 643 pgyrivtldgdlvrpggvitggSAKTNSSILERRREIEELEEKIEELEEKIAELekalaelrKELEELEEELEQLRKELE 722
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 687 QIECLMSDQECVKRNREEEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEEADslkhQLDVVIAEKLALEQQVETANEEM 766
Cdd:TIGR02168 723 ELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEE----ELAEAEAEIEELEAQIEQLKEEL 798
|
570 580 590
....*....|....*....|....*....|...
gi 48476349 767 TFMKNVLKETNFKMNQLTQELFSLKRERESVEK 799
Cdd:TIGR02168 799 KALREALDELRAELTLLNEEAANLRERLESLER 831
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
408-742 |
2.64e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.61 E-value: 2.64e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 408 LRQQNQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEQQLKvvpRFQPISEHQTREVEQLANHLKEKTDKCSELLL 487
Cdd:TIGR02168 198 LERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELE---ELQEELKEAEEELEELTAELQELEEKLEELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 488 SKEQLQRDIQERNEEIEKLEFRVRELEQallvsadtfQKVEDRKHFGAVEAKPElSLEVQLQAERDAIDRKEKEITNLEE 567
Cdd:TIGR02168 275 EVSELEEEIEELQKELYALANEISRLEQ---------QKQILRERLANLERQLE-ELEAQLEELESKLDELAEELAELEE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 568 QLEQFREELENKNEEVQQLHMQLEiqkkESTTRLQELEQENKLFKDDMEKLGLAIKESDAMstqdqhvlfgkfaqiIQEK 647
Cdd:TIGR02168 345 KLEELKEELESLEAELEELEAELE----ELESRLEELEEQLETLRSKVAQLELQIASLNNE---------------IERL 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 648 EVEIDQLNEQVTKLQQQLKITTDNKVIEEKNELIRDLETQIECLMSDQECVkRNREEEIEQLNEVIEKLQQELanigQKT 727
Cdd:TIGR02168 406 EARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEEL-ERLEEALEELREELEEAEQAL----DAA 480
|
330
....*....|....*
gi 48476349 728 SMNAHSLSEEADSLK 742
Cdd:TIGR02168 481 ERELAQLQARLDSLE 495
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
336-871 |
1.48e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 58.98 E-value: 1.48e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 336 QKEAMKAEAGPVEQQLLQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQE---KNTELMDLRQQN 412
Cdd:pfam15921 293 QANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSElteARTERDQFSQES 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 413 QALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELLlskEQL 492
Cdd:pfam15921 373 GNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQM---ERQ 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 493 QRDIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRKHFGAVEAKPELSLEVQLQAERDAIDRKEKEITNLEEQLE-- 570
Cdd:pfam15921 450 MAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDlk 529
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 571 -QFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQ---------DQHVLFGKF 640
Cdd:pfam15921 530 lQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEkaqlekeinDRRLELQEF 609
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 641 AQIIQEKEVEIDQLNEQVTKLQ-----------QQLKITTDNKviEEKNELIRDLET---QIECLMSDQECVKRNREEEI 706
Cdd:pfam15921 610 KILKDKKDAKIRELEARVSDLElekvklvnagsERLRAVKDIK--QERDQLLNEVKTsrnELNSLSEDYEVLKRNFRNKS 687
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 707 EQLNEVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQLDVVIAEK---LALEQQVETANEEMTFMKNVLKETNFKMNQL 783
Cdd:pfam15921 688 EEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQkqiTAKRGQIDALQSKIQFLEEAMTNANKEKHFL 767
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 784 TQELFSLKRERESV--EKIQSIPENSVNVAIDHLSKDK-PELEVVLTEDALKSLENQTYFRSFEEngkgsiinlETRLLQ 860
Cdd:pfam15921 768 KEEKNKLSQELSTVatEKNKMAGELEVLRSQERRLKEKvANMEVALDKASLQFAECQDIIQRQEQ---------ESVRLK 838
|
570
....*....|.
gi 48476349 861 LESTVSAKDLE 871
Cdd:pfam15921 839 LQHTLDVKELQ 849
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
399-628 |
9.72e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.54 E-value: 9.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 399 QEKNTELMDLRQQNQALEKQLEKMRKfldeqaidrehERDVFQQEIQKLEQQLKVvprfqpisehQTREVEQLANHLKEK 478
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKK-----------EEKALLKQLAALERRIAA----------LARRIRALEQELAAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 479 TDKCSELLLSKEQLQRDIQERNEEIEKlefRVRELEQ-------ALLVSADTFQKVEDRKH-FGAVEAkpelslevQLQA 550
Cdd:COG4942 82 EAELAELEKEIAELRAELEAQKEELAE---LLRALYRlgrqpplALLLSPEDFLDAVRRLQyLKYLAP--------ARRE 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 48476349 551 ERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAM 628
Cdd:COG4942 151 QAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
207-798 |
2.19e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 2.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 207 LQAAVEKLLEAISETSSQLEHAkvtqtelmRESFRQKQEATESLKCQEELRERLHEESRAR-EQLAVELSKAEGVIDGYA 285
Cdd:TIGR02168 286 LQKELYALANEISRLEQQKQIL--------RERLANLERQLEELEAQLEELESKLDELAEElAELEEKLEELKEELESLE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 286 DEKTLFERQIQEKTDIIDRLEQELLCASNRLQELEAEQQQIQEERELLSRQKEAMKAEAGPVEQQLLQETEKLMK-EKLE 364
Cdd:TIGR02168 358 AELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEaELKE 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 365 VQCQAEKVRDDLQKQVKALEiDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQAIDREHERDVFQQEI 444
Cdd:TIGR02168 438 LQAELEELEEELEELQEELE-RLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQS 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 445 QK------LEQQLKVVPRFQPISEHQTRE------------VEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKL 506
Cdd:TIGR02168 517 GLsgilgvLSELISVDEGYEAAIEAALGGrlqavvvenlnaAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKN 596
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 507 EFRVRELEQALLVSADTFQKV-----------------------------------------------EDRKHFGAVEAK 539
Cdd:TIGR02168 597 IEGFLGVAKDLVKFDPKLRKAlsyllggvlvvddldnalelakklrpgyrivtldgdlvrpggvitggSAKTNSSILERR 676
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 540 PELS-LEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKEsttrLQELEQENKLFKDDMEKL 618
Cdd:TIGR02168 677 REIEeLEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD----LARLEAEVEQLEERIAQL 752
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 619 GLAIKESDAMSTQDQHVLfGKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTD-----NKVIEEKNELIRDLETQIECL-- 691
Cdd:TIGR02168 753 SKELTELEAEIEELEERL-EEAEEELAEAEAEIEELEAQIEQLKEELKALREaldelRAELTLLNEEAANLRERLESLer 831
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 692 -MSDQECVKRNREEEIEQLNEVIEKLQQELAnigqktsmnahSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMK 770
Cdd:TIGR02168 832 rIAATERRLEDLEEQIEELSEDIESLAAEIE-----------ELEELIEELESELEALLNERASLEEALALLRSELEELS 900
|
650 660
....*....|....*....|....*...
gi 48476349 771 NVLKETNFKMNQLTQELFSLKRERESVE 798
Cdd:TIGR02168 901 EELRELESKRSELRRELEELREKLAQLE 928
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
387-759 |
2.75e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.69 E-value: 2.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 387 VEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEQQLkvvprfqpisehqtr 466
Cdd:TIGR02169 182 VEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQL--------------- 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 467 eveqlanhlkektdkcSELLLSKEQLQRDIQERNEEIEKLEFRVRELEqallvsadtfQKVEDRKHFGAVEAKPEL-SLE 545
Cdd:TIGR02169 247 ----------------ASLEEELEKLTEEISELEKRLEEIEQLLEELN----------KKIKDLGEEEQLRVKEKIgELE 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 546 VQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKES---TTRLQELEQENKLFKDDMEKLGLAI 622
Cdd:TIGR02169 301 AEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRdklTEEYAELKEELEDLRAELEEVDKEF 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 623 KESDAMSTQDQHVLfGKFAQIIQEKEVEIDQLNEQVTKLQQQL-KITTDNKVIEEK-NELIRDLETQIECLmsdqecvkR 700
Cdd:TIGR02169 381 AETRDELKDYREKL-EKLKREINELKRELDRLQEELQRLSEELaDLNAAIAGIEAKiNELEEEKEDKALEI--------K 451
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 48476349 701 NREEEIEQLNEVIEKLQQELANIGQKTSmnahSLSEEADSLKHQLDVVIAEKLALEQQV 759
Cdd:TIGR02169 452 KQEWKLEQLAADLSKYEQELYDLKEEYD----RVEKELSKLQRELAEAEAQARASEERV 506
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
265-800 |
3.14e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.56 E-value: 3.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 265 RAREQLAVELSKAEGVIDGYADEKTLFERQIQEKTDIIDRLEQELLcasnrlqELEAEQQQIQEERELLSRQKEAMKAEA 344
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELE-------ELELELEEAQAEEYELLAELARLEQDI 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 345 GPVEQQLLQETEKLMKEKLEVQcQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRK 424
Cdd:COG1196 305 ARLEERRRELEERLEELEEELA-ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEE 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 425 FLDEQAiDREHERDVFQQEIQKLEQQLKVVPRFQpisEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIE 504
Cdd:COG1196 384 LAEELL-EALRAAAELAAQLEELEEAEEALLERL---ERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 505 KLEFRVRELEQALLVSADTFQKVEDRKHFGAVEAKPELSLEVQLQAERDAIDRKEKEI--------------------TN 564
Cdd:COG1196 460 ALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAglrglagavavligveaayeAA 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 565 LEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLFGKFAQII 644
Cdd:COG1196 540 LEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLG 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 645 QEKEVEIDQ-------LNEQVTKLQQQLKITTDNKVIEEKNELIRDLETQIECLMSDQECVKRNREEEIEQLNEVIEKLQ 717
Cdd:COG1196 620 DTLLGRTLVaarleaaLRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEAL 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 718 QELANIGQKTSMNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSLKRERESV 797
Cdd:COG1196 700 LAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
...
gi 48476349 798 EKI 800
Cdd:COG1196 780 GPV 782
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
489-845 |
1.73e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 1.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 489 KEQLQRDIQERNEEIEKLEFRVRELEQALlvsadtfQKVEDRKhfgaveAKPELSLEVQLQAERDAIDRKEKEITNLEEQ 568
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEKRQQL-------ERLRRER------EKAERYQALLKEKREYEGYELLKEKEALERQ 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 569 LEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLFGKfaqiIQEKE 648
Cdd:TIGR02169 239 KEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERS----IAEKE 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 649 VEIDQLNEQVTKLQQQLkittdNKVIEEKNELIRDLETQIECLMSDQECVKRNREE------EIEQLNEVIEKLQQELAN 722
Cdd:TIGR02169 315 RELEDAEERLAKLEAEI-----DKLLAEIEELEREIEEERKRRDKLTEEYAELKEEledlraELEEVDKEFAETRDELKD 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 723 IGQKTSMnahsLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMK-------NVLKETNFKMNQLTQELFSLKRERE 795
Cdd:TIGR02169 390 YREKLEK----LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEakineleEEKEDKALEIKKQEWKLEQLAADLS 465
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 48476349 796 SVEKIQSIPENSVNVAIDHLSKDKPELEVVLTEdALKSLENQTYFRSFEE 845
Cdd:TIGR02169 466 KYEQELYDLKEEYDRVEKELSKLQRELAEAEAQ-ARASEERVRGGRAVEE 514
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
374-577 |
2.92e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.45 E-value: 2.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 374 DDLQKQVKALEiDVEEQVSRFIELEQEKNtELMDLRQQNQALEKQLEkmRKFLDEQAIDREHERDVFQQEIQKLEQQLKv 453
Cdd:COG4913 245 EDAREQIELLE-PIRELAERYAAARERLA-ELEYLRAALRLWFAQRR--LELLEAELEELRAELARLEAELERLEARLD- 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 454 vprfqpisEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRKHF 533
Cdd:COG4913 320 --------ALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAA 391
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 48476349 534 GAVEAKPELS--------LEVQLQAERDAIDRKEKEITNLE-------EQLEQFREELE 577
Cdd:COG4913 392 LLEALEEELEaleealaeAEAALRDLRRELRELEAEIASLErrksnipARLLALRDALA 450
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
229-747 |
3.38e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.30 E-value: 3.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 229 KVTQTELMRESFRQKQEATESLKCQEELRERLHEESRAREQLAVELSKAEGVIDGYADEKTLFERQIQEKTDIIDRLEQE 308
Cdd:PTZ00121 1429 EKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEA 1508
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 309 LLCASNRLQELEAEQQQIQEERELLSRQKEAMKAEAgpveqqllqeteklmKEKLEVQCQAEKVRddlqkqvKALEIDVE 388
Cdd:PTZ00121 1509 KKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEE---------------KKKADELKKAEELK-------KAEEKKKA 1566
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 389 EQVSRfieLEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQA------IDREHERDVFQQEIQKLEQQLKVVPRFQPISE 462
Cdd:PTZ00121 1567 EEAKK---AEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKkmkaeeAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEA 1643
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 463 HQTREVEQLANHLKEKTDKCSELLLSKEQLQRdiqeRNEEIEKLEFRVRELEQALLVSADTFQKVEDRKHFGAVEAKPEL 542
Cdd:PTZ00121 1644 EEKKKAEELKKAEEENKIKAAEEAKKAEEDKK----KAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAE 1719
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 543 SLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNeEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAI 622
Cdd:PTZ00121 1720 ELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKK-KIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDK 1798
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 623 KESDAMSTQDQHVLFGKFAQII--QEKEVEIDQLNEQVTKLQQQLKittDNKVIEEKNELIRDLETQIECLMSDQECVKR 700
Cdd:PTZ00121 1799 KIKDIFDNFANIIEGGKEGNLVinDSKEMEDSAIKEVADSKNMQLE---EADAFEKHKFNKNNENGEDGNKEADFNKEKD 1875
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 48476349 701 NREEEIEQLNEVIEKLQQELANIGQKTSmNAHSLSEEADSLKHQLDV 747
Cdd:PTZ00121 1876 LKEDDEEEIEEADEIEKIDKDDIEREIP-NNNMAGKNNDIIDDKLDK 1921
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
265-766 |
6.49e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 6.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 265 RAREQLAVeLSKAEGVIDGYADEKTLFERQIQEKTDI-IDRLEQELLCASNRLQELEAEQQQIQEERELLSRQKEAMKAE 343
Cdd:COG4913 246 DAREQIEL-LEPIRELAERYAAARERLAELEYLRAALrLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 344 AGPVEQQL-------LQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALE 416
Cdd:COG4913 325 LDELEAQIrgnggdrLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 417 KQLEKmrkfLDEQAIDREHERDVFQQEIQKLEQQLKVVPRFQpiseHQTRevEQLANHLKEKTDKC---SELLlskeqlq 493
Cdd:COG4913 405 EALAE----AEAALRDLRRELRELEAEIASLERRKSNIPARL----LALR--DALAEALGLDEAELpfvGELI------- 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 494 rDIQERNEE----IEKLefrVRELEQALLVSADTFQKVE---DRKHFGAV----EAKPELSLEVQLQAERDAIDRK---- 558
Cdd:COG4913 468 -EVRPEEERwrgaIERV---LGGFALTLLVPPEHYAAALrwvNRLHLRGRlvyeRVRTGLPDPERPRLDPDSLAGKldfk 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 559 EKEITN-LEEQLEQFR--------EELEN------------KNEEVQQLHMQLEIQKK-----ESTTRLQELEQENKLFK 612
Cdd:COG4913 544 PHPFRAwLEAELGRRFdyvcvdspEELRRhpraitragqvkGNGTRHEKDDRRRIRSRyvlgfDNRAKLAALEAELAELE 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 613 DDMEKLGLAIKESDA--MSTQDQHVLFGKFAQiIQEKEVEIDQLNEQVTKLQQQL-KITTDNKVIEEKNELIRDLETQIE 689
Cdd:COG4913 624 EELAEAEERLEALEAelDALQERREALQRLAE-YSWDEIDVASAEREIAELEAELeRLDASSDDLAALEEQLEELEAELE 702
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 690 CLMSDQECVKRNR---EEEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEM 766
Cdd:COG4913 703 ELEEELDELKGEIgrlEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARL 782
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
571-799 |
9.44e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 9.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 571 QFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQhvlfgKFAQIIQEKEVE 650
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEE-----KLKERLEELEED 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 651 IDQLNEQVTKLQQQLKitTDNKVIEEKNELIRDLETQIECL-MSDQECVKRNREEEIEQLNEVIEKLQQELANIGQKTS- 728
Cdd:TIGR02169 746 LSSLEQEIENVKSELK--ELEARIEELEEDLHKLEEALNDLeARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNr 823
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 48476349 729 --MNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSLKRERESVEK 799
Cdd:TIGR02169 824 ltLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEA 896
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
489-837 |
1.16e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 49.73 E-value: 1.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 489 KEQLQRDIQERNEEIEKLEFRVRELEQallvsadtfqkVEDRKHFGAVEAKPELSLEVQ-LQAERDAI----DRKEKEIT 563
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESNE-----------LHEKQKFYLRQSVIDLQTKLQeMQMERDAMadirRRESQSQE 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 564 NLEEQLEQFREELEN----KNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLFGK 639
Cdd:pfam15921 142 DLRNQLQNTVHELEAakclKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSA 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 640 FAQIIQEKEVEIDQLNEQVTKLQQQ---LKITTDNKVieekNELIRDLETQIECLMSDQECVKRNREEEIEQLNEVIEKL 716
Cdd:pfam15921 222 ISKILRELDTEISYLKGRIFPVEDQleaLKSESQNKI----ELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSI 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 717 QQELANIGQ----KTSMNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSL-- 790
Cdd:pfam15921 298 QSQLEIIQEqarnQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLdd 377
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 48476349 791 ----------KRERE-SVEKIQSI----PENSVNVAIDHLSK--DKPELEVVLTEDALKSLENQ 837
Cdd:pfam15921 378 qlqklladlhKREKElSLEKEQNKrlwdRDTGNSITIDHLRRelDDRNMEVQRLEALLKAMKSE 441
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
333-665 |
1.34e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.30 E-value: 1.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 333 LSRQKeAMKAEAGPVEQQLlqetekLMKEKLEVQCQAEKVRDDLQkqvkaleiDVEEQVSRFIELEQEKNTELMDLRQQN 412
Cdd:TIGR02169 210 AERYQ-ALLKEKREYEGYE------LLKEKEALERQKEAIERQLA--------SLEEELEKLTEEISELEKRLEEIEQLL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 413 QALEKQLEKMrkfldeqaidREHERDVFQQEIQKLEQQLKVVPRFQPISEhqtREVEQLANHLKEKTDKCSELLLSKEQL 492
Cdd:TIGR02169 275 EELNKKIKDL----------GEEEQLRVKEKIGELEAEIASLERSIAEKE---RELEDAEERLAKLEAEIDKLLAEIEEL 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 493 QRDIQERNEEIEKLEFRVRELEQALlvsADTFQKVEDrkhfgaveakpelsLEVQLQAERDAIDRKEKEITNLEEQLEQF 572
Cdd:TIGR02169 342 EREIEEERKRRDKLTEEYAELKEEL---EDLRAELEE--------------VDKEFAETRDELKDYREKLEKLKREINEL 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 573 REELENKNEEVQQLHMQLEIQKKEsttrLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLfGKFAQIIQEKEVEID 652
Cdd:TIGR02169 405 KRELDRLQEELQRLSEELADLNAA----IAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADL-SKYEQELYDLKEEYD 479
|
330
....*....|...
gi 48476349 653 QLNEQVTKLQQQL 665
Cdd:TIGR02169 480 RVEKELSKLQREL 492
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
490-665 |
1.74e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 1.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 490 EQLQRDIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRKHFGAVEAkpELSlevQLQAERDAIDRKEKEITNLEEQL 569
Cdd:COG4913 620 AELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAER--EIA---ELEAELERLDASSDDLAALEEQL 694
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 570 EQFREELENKNEEVQQLhmQLEIQKKEST-TRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQHVLFGKFAQIIQEKE 648
Cdd:COG4913 695 EELEAELEELEEELDEL--KGEIGRLEKElEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLE 772
|
170
....*....|....*..
gi 48476349 649 VEIDQLNEQVTKLQQQL 665
Cdd:COG4913 773 ERIDALRARLNRAEEEL 789
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
206-586 |
2.57e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.51 E-value: 2.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 206 RLQAAVEKLLEAISETSSQLEHAKVTQTELmRESFRQKQEATESLkcqeelrerLHEESRAREQLAVelskaegvidgya 285
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEEL-EEELEQLRKELEEL---------SRQISALRKDLAR------------- 737
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 286 dektlFERQIQEKTDIIDRLEQELLCASNRLQELEAEQQQIQEERELLSRQKEAMKAEAGPVEQQLLQETEKLmkeklev 365
Cdd:TIGR02168 738 -----LEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL------- 805
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 366 qcqaekvrDDLQKQVKALEIDVEEQVSRFIELEQEKNtelmDLRQQNQALEKQLEKMRkfldEQAIDREHERDVFQQEIQ 445
Cdd:TIGR02168 806 --------DELRAELTLLNEEAANLRERLESLERRIA----ATERRLEDLEEQIEELS----EDIESLAAEIEELEELIE 869
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 446 KLEQQLKVVprfQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVSADTFq 525
Cdd:TIGR02168 870 ELESELEAL---LNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL- 945
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 48476349 526 KVEDRKHFGAVEAKPELSLEVQLQAERDaIDRKEKEITNL-------EEQLEQFREELENKNEEVQQL 586
Cdd:TIGR02168 946 SEEYSLTLEEAEALENKIEDDEEEARRR-LKRLENKIKELgpvnlaaIEEYEELKERYDFLTAQKEDL 1012
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
264-609 |
3.57e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.14 E-value: 3.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 264 SRAREQLAVELSKAEGVIDGYADEKTLFERQIQEKTDIIDRLEQELLCASNRLQELEAEQqqiqeerELLSRQKEAMKAE 343
Cdd:TIGR02169 708 SQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARI-------EELEEDLHKLEEA 780
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 344 AGPVEQQLLQEteklmkeklevqcQAEKVRDDLQKqvkaLEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMR 423
Cdd:TIGR02169 781 LNDLEARLSHS-------------RIPEIQAELSK----LEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRI 843
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 424 KfLDEQAIDREHERDVFQQEIQKLEQQLKvvprfqpisEHQTrEVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEI 503
Cdd:TIGR02169 844 D-LKEQIKSIEKEIENLNGKKEELEEELE---------ELEA-ALRDLESRLGDLKKERDELEAQLRELERKIEELEAQI 912
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 504 EKLEFRVRELEQALLVSADTFQKVEDRKHFGAVEAKPELSLEvQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEV 583
Cdd:TIGR02169 913 EKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLE-DVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDEL 991
|
330 340
....*....|....*....|....*.
gi 48476349 584 QQLHMQLEIQKKESTTRLQELEQENK 609
Cdd:TIGR02169 992 KEKRAKLEEERKAILERIEEYEKKKR 1017
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
490-714 |
5.79e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 47.16 E-value: 5.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 490 EQLQRDIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDrkhfgaveakpELSLevqLQAERDAIDRKEKEITNLEEQL 569
Cdd:COG2433 409 TEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLER-----------ELSE---ARSEERREIRKDREISRLDREI 474
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 570 EQFREELENKNEEVQQLHMQLEIQKkesttRLQELEQENKLF---------KDDMEKL--GLAIKESDAMSTQDQHVLFG 638
Cdd:COG2433 475 ERLERELEEERERIEELKRKLERLK-----ELWKLEHSGELVpvkvvekftKEAIRRLeeEYGLKEGDVVYLRDASGAGR 549
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 639 KFAQIIQEKEVEI----DQLNEQVTKLQQQLKI---TTDNKVIEEKNEL----IRDLETQIECLMSDQEcvKRNREEEIE 707
Cdd:COG2433 550 STAELLAEAGPRAvivpGELSEAADEVLFEEGIpvlPAEDVTIQEVDDLavvdEEELEAAIEDWEERAE--ERRREKKAE 627
|
....*..
gi 48476349 708 QLNEVIE 714
Cdd:COG2433 628 MLERLIS 634
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
388-625 |
6.66e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 46.84 E-value: 6.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 388 EEQVSRFIELEQEKNTE-LMDLRQQNQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEQQLKvvprfqpisehqtR 466
Cdd:PRK05771 27 ELGVVHIEDLKEELSNErLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVE-------------E 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 467 EVEQLANHLKEKTDKCSELllskEQLQRDIQERNEEIEKLE-------------------FRVRE--LEQALLVSADTFQ 525
Cdd:PRK05771 94 ELEKIEKEIKELEEEISEL----ENEIKELEQEIERLEPWGnfdldlslllgfkyvsvfvGTVPEdkLEELKLESDVENV 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 526 KVEDRKH-------FGAVEAKPELS--------LEVQLQAER---DAIDRKEKEITNLEEQLEQFREELENKNEEVQQLH 587
Cdd:PRK05771 170 EYISTDKgyvyvvvVVLKELSDEVEeelkklgfERLELEEEGtpsELIREIKEELEEIEKERESLLEELKELAKKYLEEL 249
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 48476349 588 MQ----LEIQKKESTTRLQELEqENKLF-------KDDMEKLGLAIKES 625
Cdd:PRK05771 250 LAlyeyLEIELERAEALSKFLK-TDKTFaiegwvpEDRVKKLKELIDKA 297
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
153-799 |
7.13e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.06 E-value: 7.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 153 PSYSGSDMPRNDINMWSKVTEEGTELSQRLVRSGFAGTEIDPENEELMlnissRLQAAVEKLLEA-ISETSSQLEHAKVT 231
Cdd:PTZ00121 1074 PSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAK-----KKAEDARKAEEArKAEDARKAEEARKA 1148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 232 QTELMRESFRQKQEATESLKCQEELRERLHEESRAREQL--AVELSKAEGVIDGYADEKTLFERQIQEktdiIDRLEQEL 309
Cdd:PTZ00121 1149 EDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVrkAEELRKAEDARKAEAARKAEEERKAEE----ARKAEDAK 1224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 310 LCASNRLQELEAEQQQIQEERELLSRQKEAMKAEagpvEQQLLQETEKLMKEKLEVQCQAEKVRDDLQKQvKALEIDVEE 389
Cdd:PTZ00121 1225 KAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFE----EARMAHFARRQAAIKAEEARKADELKKAEEKK-KADEAKKAE 1299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 390 QVSRFIELEQ--EKNTELMDLRQQNQALEKQLEKMRKfldeQAIDREHERDVFQQEIQKLEQQLKVVPRFQPISEHQTRE 467
Cdd:PTZ00121 1300 EKKKADEAKKkaEEAKKADEAKKKAEEAKKKADAAKK----KAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEE 1375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 468 VEQLANHLKEKTDKCSELLLSKEQLQRDiQERNEEIEKLEFRVRELEQALlvsadtfQKVEDRKHFGAVEAKPELSLEVQ 547
Cdd:PTZ00121 1376 AKKKADAAKKKAEEKKKADEAKKKAEED-KKKADELKKAAAAKKKADEAK-------KKAEEKKKADEAKKKAEEAKKAD 1447
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 548 lQAERDAIDRKEKEitNLEEQLEQFR--EELENKNEE---VQQLHMQLEIQKKEStTRLQELEQENKlfKDDMEKLGLAI 622
Cdd:PTZ00121 1448 -EAKKKAEEAKKAE--EAKKKAEEAKkaDEAKKKAEEakkADEAKKKAEEAKKKA-DEAKKAAEAKK--KADEAKKAEEA 1521
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 623 KESDAMSTQDQHVLFGKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTDNKVIEEKNELIRDLETQIEclmsdqecVKRNR 702
Cdd:PTZ00121 1522 KKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKK--------AEEAR 1593
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 703 EEEIEQLNEVIEKLQQELANIGQKTSMNAHSL--SEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKM 780
Cdd:PTZ00121 1594 IEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELkkAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEED 1673
|
650
....*....|....*....
gi 48476349 781 NQLTQELFSLKRERESVEK 799
Cdd:PTZ00121 1674 KKKAEEAKKAEEDEKKAAE 1692
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
417-800 |
2.75e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.01 E-value: 2.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 417 KQLEKMRKFLDEQAIDREHERDVFQQEIQKLEQQLKvvprfqpisehqtreveQLANHLKEKTDKCSELLLSKEQLQRDI 496
Cdd:TIGR04523 50 KNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIK-----------------DLNDKLKKNKDKINKLNSDLSKINSEI 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 497 QERNEEIEKLEFRVRELEQALlvsadtfQKVEDRKHFGAVEAKpelSLEVQLQAERDAIDRKEKEITNLEEQLEQFREEL 576
Cdd:TIGR04523 113 KNDKEQKNKLEVELNKLEKQK-------KENKKNIDKFLTEIK---KKEKELEKLNNKYNDLKKQKEELENELNLLEKEK 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 577 ENKNEEVQQLHMQLeIQKKESTTRLQELEQENKLFKDDMEKLGlAIKESDAMSTQDQHVLFGKFAQIIQEKEVEIDQLNE 656
Cdd:TIGR04523 183 LNIQKNIDKIKNKL-LKLELLLSNLKKKIQKNKSLESQISELK-KQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKD 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 657 QVTKLQQQLK-----ITTDNKVIEEKNELIRDLETQIECLMSD-QECVKRNREEEIEQLNEVIEKLQQELANIGQKTSmn 730
Cdd:TIGR04523 261 EQNKIKKQLSekqkeLEQNNKKIKELEKQLNQLKSEISDLNNQkEQDWNKELKSELKNQEKKLEEIQNQISQNNKIIS-- 338
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 731 ahSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQELFSLKRERESVEKI 800
Cdd:TIGR04523 339 --QLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKL 406
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
545-767 |
2.93e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.44 E-value: 2.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 545 EVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAI-- 622
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERAra 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 623 --KESDAMSTQDQHVLFGKFAQIIQEKEVeIDQLNEQVTKLQQQLKitTDNKVIEEKNELIRDLETQIECLMSDQECVKR 700
Cdd:COG3883 95 lyRSGGSVSYLDVLLGSESFSDFLDRLSA-LSKIADADADLLEELK--ADKAELEAKKAELEAKLAELEALKAELEAAKA 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 48476349 701 NREEEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMT 767
Cdd:COG3883 172 ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 238
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
565-800 |
3.83e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.24 E-value: 3.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 565 LEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFkDDMEKLGLAIKESDAMSTQdqhvlfgkfaqiI 644
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLV-DLSEEAKLLLQQLSELESQ------------L 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 645 QEKEVEIDQLNEQVTKLQQQLKITTDNKVIEEKNELIRDLETQIECLMSD-QECVKRNREE--EIEQLNEVIEKLQQELA 721
Cdd:COG3206 229 AEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAElAELSARYTPNhpDVIALRAQIAALRAQLQ 308
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 48476349 722 NIGQKTsmnahslseeADSLKHQLDVVIAEKLALEQQVETANEEMTfmknvlketnfKMNQLTQELFSLKRERESVEKI 800
Cdd:COG3206 309 QEAQRI----------LASLEAELEALQAREASLQAQLAQLEARLA-----------ELPELEAELRRLEREVEVAREL 366
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
489-610 |
4.94e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.00 E-value: 4.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 489 KEQLQRDIQERNEEIEKLEFRVRELEQALlvsadtfqkvedRKHFGAVEAKpelslEVQLQAERDAIDRKEKEITNLEEQ 568
Cdd:PRK12704 70 RNEFEKELRERRNELQKLEKRLLQKEENL------------DRKLELLEKR-----EEELEKKEKELEQKQQELEKKEEE 132
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 48476349 569 LEQFREELENKNEEVQQL------HMQLEIQKKESTT----RLQELEQENKL 610
Cdd:PRK12704 133 LEELIEEQLQELERISGLtaeeakEILLEKVEEEARHeaavLIKEIEEEAKE 184
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
351-993 |
5.38e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.28 E-value: 5.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 351 LLQETEKLMKeKLEVQCQAEKVRDDLQKQVKALEIDV--------EEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKM 422
Cdd:TIGR02168 194 ILNELERQLK-SLERQAEKAERYKELKAELRELELALlvlrleelREELEELQEELKEAEEELEELTAELQELEEKLEEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 423 RKF---LDEQAIDREHERDVFQQEIQKLEQQLkvvprfqpisEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQER 499
Cdd:TIGR02168 273 RLEvseLEEEIEELQKELYALANEISRLEQQK----------QILRERLANLERQLEELEAQLEELESKLDELAEELAEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 500 NEEIEKLEFRVRELEQALLVSADTFQKVEDRKHfgaveakpelSLEVQLQAERDAIDRKE-------KEITNLEEQLEQF 572
Cdd:TIGR02168 343 EEKLEELKEELESLEAELEELEAELEELESRLE----------ELEEQLETLRSKVAQLElqiaslnNEIERLEARLERL 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 573 REELENKNEEVQQLHMQL-EIQKKESTTRLQELEQE---NKLFKDDMEKLGLAIKESDAMSTQDQHVLFGKFAQIIQEKE 648
Cdd:TIGR02168 413 EDRRERLQQEIEELLKKLeEAELKELQAELEELEEEleeLQEELERLEEALEELREELEEAEQALDAAERELAQLQARLD 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 649 VEIDQLNEQ-------VTKLQQQLKITTDNKVIEEKNELIRDLETQIECLMSD--QECVKRNREEEIEQLNEVIEKLQQE 719
Cdd:TIGR02168 493 SLERLQENLegfsegvKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGrlQAVVVENLNAAKKAIAFLKQNELGR 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 720 LANIGQKTSMNAHSLSEEADSLKHQLDVVIAEKLaLEQQVETANEEMTFM-------------KNVLKETNFKMNQLTQE 786
Cdd:TIGR02168 573 VTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKD-LVKFDPKLRKALSYLlggvlvvddldnaLELAKKLRPGYRIVTLD 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 787 LFSLKRE----RESVEKIQSIPENSVNvaIDHLSKDKPELEVVLTE--DALKSLENQTyfrsfeENGKGSIINLETRLLQ 860
Cdd:TIGR02168 652 GDLVRPGgvitGGSAKTNSSILERRRE--IEELEEKIEELEEKIAEleKALAELRKEL------EELEEELEQLRKELEE 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 861 LESTVSAKDLEL---TQCYKQIKDMQEQGQFETEMLQKKIVNLQKIVEEKVAAALVSQIQLEAVQE-YAKFCQDNQTISS 936
Cdd:TIGR02168 724 LSRQISALRKDLarlEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAqIEQLKEELKALRE 803
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*....
gi 48476349 937 EPERTNIQnLNQLRED--ELGSDISALTLRISELESQVVEMHTSLILEKEQVEIAEKNV 993
Cdd:TIGR02168 804 ALDELRAE-LTLLNEEaaNLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEI 861
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
555-907 |
5.86e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.86 E-value: 5.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 555 IDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQL---EIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQ 631
Cdd:TIGR04523 28 ANKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLnkdEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSK 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 632 DQHVLFGKFAQIIQeKEVEIDQLNEQVTKLQQQLK-----ITTDNKVIEEKNELIRDLETQIECLmsdqECVKRNREEEI 706
Cdd:TIGR04523 108 INSEIKNDKEQKNK-LEVELNKLEKQKKENKKNIDkflteIKKKEKELEKLNNKYNDLKKQKEEL----ENELNLLEKEK 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 707 EQLNEVIEKLQQELANIGQKTSmNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQE 786
Cdd:TIGR04523 183 LNIQKNIDKIKNKLLKLELLLS-NLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDE 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 787 LFSLKREREsvEKIQSIPENsvNVAIDHLSKDKPELEVVLTE-DALKSLENQTYFRSFEENGKGSIINLETRLLQLESTV 865
Cdd:TIGR04523 262 QNKIKKQLS--EKQKELEQN--NKKIKELEKQLNQLKSEISDlNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKII 337
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 48476349 866 SAKDLELTQCYKQIKDMQEQGQFETEMLQKKIVNLQKIVEEK 907
Cdd:TIGR04523 338 SQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKEN 379
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
368-665 |
7.44e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.79 E-value: 7.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 368 QAEKVrDDLQKQVKALEIDVEEQVsrfiELEQEKNTELMDLRQQNQALEKQLEKMRKFLD--EQAIDREHERDV-FQQEI 444
Cdd:COG3096 345 QQEKI-ERYQEDLEELTERLEEQE----EVVEEAAEQLAEAEARLEAAEEEVDSLKSQLAdyQQALDVQQTRAIqYQQAV 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 445 QKLE--QQLKVVP------------RFQPISEHQTREVEQLANHL------KEKTDKCSELLLS--------------KE 490
Cdd:COG3096 420 QALEkaRALCGLPdltpenaedylaAFRAKEQQATEEVLELEQKLsvadaaRRQFEKAYELVCKiageversqawqtaRE 499
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 491 QLQ--RDIQERNEEIEKLEFRVRELEQALlvsadtfqkvedRKHFGAVEAKPELSleVQLQAERDAIDrkekEITNLEEQ 568
Cdd:COG3096 500 LLRryRSQQALAQRLQQLRAQLAELEQRL------------RQQQNAERLLEEFC--QRIGQQLDAAE----ELEELLAE 561
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 569 LEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKL-------GLAIKESDAMSTQDQHVLfgkfa 641
Cdd:COG3096 562 LEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALerlreqsGEALADSQEVTAAMQQLL----- 636
|
330 340
....*....|....*....|....*.
gi 48476349 642 qiIQEKEVEI--DQLNEQVTKLQQQL 665
Cdd:COG3096 637 --EREREATVerDELAARKQALESQI 660
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
442-991 |
7.73e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.51 E-value: 7.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 442 QEIQKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEqallvsa 521
Cdd:PRK03918 207 REINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELE------- 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 522 dtfQKVEDRKHFGAvEAKPELSLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHmQLEIQKKESTTRL 601
Cdd:PRK03918 280 ---EKVKELKELKE-KAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLE-ELKKKLKELEKRL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 602 QELEQENKLFKDDMEKLGlaikESDAMSTQDQHVLFGKFAQIIQEKEVEIDQLNEQVTKLQQqlKITTDNKVIEEKNELI 681
Cdd:PRK03918 355 EELEERHELYEEAKAKKE----ELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITA--RIGELKKEIKELKKAI 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 682 RDLE-TQIECLMSDQECVKRNREEEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQLDVVIAEKLAlEQQVE 760
Cdd:PRK03918 429 EELKkAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELA-EQLKE 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 761 TANEEMTFMKNVLKETNFKMNQLTQELFSLKRERESVEKIQSipensvnvAIDHLSKDKPELEVVL--TEDALKSLENQt 838
Cdd:PRK03918 508 LEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELE--------KLEELKKKLAELEKKLdeLEEELAELLKE- 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 839 yfrsFEENGKGSIINLETRLLQLEStVSAKDLELTQCYKQIKDMQEQGQFETEMLQKKIVNLQKIveekvaaalvsqiqL 918
Cdd:PRK03918 579 ----LEELGFESVEELEERLKELEP-FYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAET--------------E 639
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 48476349 919 EAVQEYAKFCQDNQTISSEPERTNIQNlnqlREDELGSDISALTLRISELESQVVEMHTSLILEKEQVEIAEK 991
Cdd:PRK03918 640 KRLEELRKELEELEKKYSEEEYEELRE----EYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREK 708
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
420-618 |
7.94e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.22 E-value: 7.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 420 EKMRKFLDEQAIDreherdvfqQEIQKLEQQLKVVPRfqpisehqtrEVEQLANHLKEKTDKCSELLLSKEQLQRDIQER 499
Cdd:COG1579 4 EDLRALLDLQELD---------SELDRLEHRLKELPA----------ELAELEDELAALEARLEAAKTELEDLEKEIKRL 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 500 NEEIEKLEFRVRELEQALlvsadtfQKVEDRKHFGAveakpelsLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENK 579
Cdd:COG1579 65 ELEIEEVEARIKKYEEQL-------GNVRNNKEYEA--------LQKEIESLKRRISDLEDEILELMERIEELEEELAEL 129
|
170 180 190
....*....|....*....|....*....|....*....
gi 48476349 580 NEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKL 618
Cdd:COG1579 130 EAELAELEAELEEKKAELDEELAELEAELEELEAEREEL 168
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
287-514 |
8.83e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.19 E-value: 8.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 287 EKTLFERQIQEKTDIIDRLEQELLCASNRLQELEAEQQQIQEERELLSRQKEAMKAEAGPVEQQLLQETEKLMKEKLEVQ 366
Cdd:pfam17380 347 ERELERIRQEERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIR 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 367 CQAEKVRddlQKQVKALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQK 446
Cdd:pfam17380 427 AEQEEAR---QREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEE 503
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 48476349 447 -----LEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELE 514
Cdd:pfam17380 504 rkqamIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMERERE 576
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
286-800 |
9.00e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.13 E-value: 9.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 286 DEKTLFERQIQEKTDIIDRLEQELLCASNRLQeleaEQQQIQEERELLSRQKEAMKAEAGPVEQQLLQETEKLMKEKLEV 365
Cdd:PRK03918 200 KELEEVLREINEISSELPELREELEKLEKEVK----ELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEI 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 366 QCQAEKVRDDLQKQVKALE-IDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKfLDEQAIDREHERDVFQQEI 444
Cdd:PRK03918 276 EELEEKVKELKELKEKAEEyIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEE-KEERLEELKKKLKELEKRL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 445 QKLEQQLKVVPRFQPISEHQTREVEQLANHLKEKTDKCSELL-LSKEQLQRDIQERNEEIEKLEFRVRELEQAL--LVSA 521
Cdd:PRK03918 355 EELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELeKAKEEIEEEISKITARIGELKKEIKELKKAIeeLKKA 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 522 DTFQKVEDRKhfgaVEAKPELSLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQL-------EIQK 594
Cdd:PRK03918 435 KGKCPVCGRE----LTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKelaeqlkELEE 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 595 KESTTRLQELEQENKLFKDDMEKLG-----LAIKESDAMSTQDQHVLFGKFAQIIQEKEVEIDQLNEQVTKL------QQ 663
Cdd:PRK03918 511 KLKKYNLEELEKKAEEYEKLKEKLIklkgeIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELgfesveEL 590
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 664 QLKITTDNKVIEEKNELiRDLETQIECLMSDQECVKRNREEEIEQLNEV---IEKLQQELANIGQKTSMNAH-SLSEEAD 739
Cdd:PRK03918 591 EERLKELEPFYNEYLEL-KDAEKELEREEKELKKLEEELDKAFEELAETekrLEELRKELEELEKKYSEEEYeELREEYL 669
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 48476349 740 SLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKEtnfkMNQLTQELFSLKRERESVEKI 800
Cdd:PRK03918 670 ELSRELAGLRAELEELEKRREEIKKTLEKLKEELEE----REKAKKELEKLEKALERVEEL 726
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
490-728 |
9.74e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 9.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 490 EQLQRDIQERNEEIEKLEfRVRELEQALLVSADTFQKVEDRKHFGAVEAKpelslEVQLQAERDAIDRKEKEITNLEEQL 569
Cdd:COG4913 238 ERAHEALEDAREQIELLE-PIRELAERYAAARERLAELEYLRAALRLWFA-----QRRLELLEAELEELRAELARLEAEL 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 570 EQFREELENKNEEVQQLHMQLEiqkKESTTRLQELEQEnklfkddmeklglaikesdamstqdqhvlfgkfaqiIQEKEV 649
Cdd:COG4913 312 ERLEARLDALREELDELEAQIR---GNGGDRLEQLERE------------------------------------IERLER 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 650 EIDQLNEQVTKLQQQLK-----ITTDNKVIEEKNELIRDLETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQELANIG 724
Cdd:COG4913 353 ELEERERRRARLEALLAalglpLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLE 432
|
....
gi 48476349 725 QKTS 728
Cdd:COG4913 433 RRKS 436
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
533-763 |
1.05e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 533 FGAVEAKPELSLEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQL---EIQKKESTTRLQELEQE-- 607
Cdd:COG4942 14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIralEQELAALEAELAELEKEia 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 608 --NKLFKDDMEKLGLAIKESDAMSTQDQHVLF---GKFAQIIQEKEVeIDQLNEQVTKLQQQLKITTDNkvIEEKNELIR 682
Cdd:COG4942 94 elRAELEAQKEELAELLRALYRLGRQPPLALLlspEDFLDAVRRLQY-LKYLAPARREQAEELRADLAE--LAALRAELE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 683 DLETQIECLMSDQECVKRNREEEIEQLNEVIEKLQQELANIGQKTSmnahSLSEEADSLKHQLDVVIAEKLALEQQVETA 762
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELA----ELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
.
gi 48476349 763 N 763
Cdd:COG4942 247 G 247
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
544-814 |
1.24e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.90 E-value: 1.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 544 LEVQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQ----KKESTTRLQELEQENKLFKDDMEKLG 619
Cdd:pfam12128 623 AEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKAlaerKDSANERLNSLEAQLKQLDKKHQAWL 702
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 620 LAIKE-----SDAMSTQDQHV---LFGKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTDNKVIEEKNEL-----IRDLET 686
Cdd:pfam12128 703 EEQKEqkreaRTEKQAYWQVVegaLDAQLALLKAAIAARRSGAKAELKALETWYKRDLASLGVDPDVIAklkreIRTLER 782
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 687 QIECLMSDQECVKR--------------NREEEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEEADSLKHQLDVVIAE- 751
Cdd:pfam12128 783 KIERIAVRRQEVLRyfdwyqetwlqrrpRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENl 862
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 48476349 752 -----------KLALEQQVETANEEMTFMKNVLKEtnfkmnqltqelFSLKRERESvEKIQSIPENSVNVAIDH 814
Cdd:pfam12128 863 rglrcemsklaTLKEDANSEQAQGSIGERLAQLED------------LKLKRDYLS-ESVKKYVEHFKNVIADH 923
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
368-607 |
1.60e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 368 QAEKVRDDLQKQVKALEIDVEEQVSRFIELEQEKNteLMDLRQQNQALEKQLEKmrkfLDEQAIDREHERDVFQQEIQKL 447
Cdd:COG3206 172 EARKALEFLEEQLPELRKELEEAEAALEEFRQKNG--LVDLSEEAKLLLQQLSE----LESQLAEARAELAEAEARLAAL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 448 EQQLKVVPRFQPiSEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVSadtfqkv 527
Cdd:COG3206 246 RAQLGSGPDALP-ELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILAS------- 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 528 edrkhfgaveakpelslevqLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTT---RLQEL 604
Cdd:COG3206 318 --------------------LEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESllqRLEEA 377
|
...
gi 48476349 605 EQE 607
Cdd:COG3206 378 RLA 380
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
396-789 |
1.84e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.36 E-value: 1.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 396 ELEQEKNTELMDLRQQNQALEKQLEKMRKfLDEQAIDREHERDVFQQEIQKLEQQLKVVPRFQPISEHQTREVEQ----L 471
Cdd:TIGR02169 685 GLKRELSSLQSELRRIENRLDELSQELSD-ASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSelkeL 763
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 472 ANHLKEKTDKCSELLLSKEQLQRD-----IQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRKHFgaveakpeLSLEV 546
Cdd:TIGR02169 764 EARIEELEEDLHKLEEALNDLEARlshsrIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEY--------LEKEI 835
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 547 Q-LQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEiqkkestTRLQELEQEnklfKDDMEKLGLAIKES 625
Cdd:TIGR02169 836 QeLQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLE-------SRLGDLKKE----RDELEAQLRELERK 904
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 626 damstqdqhvlfgkfaqiIQEKEVEIDQLNEQVTKLQQQLKITTDNkvIEEKNELIRDLETQIECLMSdqecvkrnreee 705
Cdd:TIGR02169 905 ------------------IEELEAQIEKKRKRLSELKAKLEALEEE--LSEIEDPKGEDEEIPEEELS------------ 952
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 706 IEQLNEVIEKLQQELANIGQkTSMNAHSLSEEA----DSLKHQLDVVIAEKLALEQQVETANEEmtfMKNVLKETNFKMN 781
Cdd:TIGR02169 953 LEDVQAELQRVEEEIRALEP-VNMLAIQEYEEVlkrlDELKEKRAKLEEERKAILERIEEYEKK---KREVFMEAFEAIN 1028
|
....*...
gi 48476349 782 QLTQELFS 789
Cdd:TIGR02169 1029 ENFNEIFA 1036
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
382-667 |
2.51e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.87 E-value: 2.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 382 ALEIDVEEQVSRFIELEQEKNTELMDLRQQNQALEKQLEKMRKFLD--EQAIDREH--ERDVFQQEIQKLEQQLKvvprf 457
Cdd:PRK04863 830 AFEADPEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSalNRLLPRLNllADETLADRVEEIREQLD----- 904
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 458 qpisehqtrEVEQLANHLKEKTDKCSELllskEQLQRDIQERNEEIEKLEFRVRELEQAL-LVSADTF---QKVEDRKHF 533
Cdd:PRK04863 905 ---------EAEEAKRFVQQHGNALAQL----EPIVSVLQSDPEQFEQLKQDYQQAQQTQrDAKQQAFaltEVVQRRAHF 971
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 534 GAVEAKPELSLEVQLQaerDAIDRKEKEitnLEEQLEQFREELENKNEEVQQLHmQLEIQKKESTTRLQELEQEnklFKD 613
Cdd:PRK04863 972 SYEDAAEMLAKNSDLN---EKLRQRLEQ---AEQERTRAREQLRQAQAQLAQYN-QVLASLKSSYDAKRQMLQE---LKQ 1041
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 48476349 614 DMEKLGLAI---KESDAMSTQDQ-----HVLFGKFAQI---IQEKEVEIDQLNEQVTKLQQQLKI 667
Cdd:PRK04863 1042 ELQDLGVPAdsgAEERARARRDElharlSANRSRRNQLekqLTFCEAEMDNLTKKLRKLERDYHE 1106
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
496-726 |
2.93e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.54 E-value: 2.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 496 IQERNEEIEKLEFRVRELEQALlvsaDTFQKVEDRkhfgaveakpelslevQLQAERDAIDRKEKEITNLEEQLEQFREE 575
Cdd:PHA02562 176 IRELNQQIQTLDMKIDHIQQQI----KTYNKNIEE----------------QRKKNGENIARKQNKYDELVEEAKTIKAE 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 576 LENKNEEVQQLHMQLEiqkkESTTRLQELEQENKLFKDDMEKLGLAIK-----------------ESDAMS--TQDQHVL 636
Cdd:PHA02562 236 IEELTDELLNLVMDIE----DPSAALNKLNTAAAKIKSKIEQFQKVIKmyekggvcptctqqiseGPDRITkiKDKLKEL 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 637 FGKFAQI---IQEKEVEIDQLNEQVTKLQQ-QLKITTDNKVIEEKNELIRDLETQIECLMSDqecvKRNREEEIEQLNEV 712
Cdd:PHA02562 312 QHSLEKLdtaIDELEEIMDEFNEQSKKLLElKNKISTNKQSLITLVDKAKKVKAAIEELQAE----FVDNAEELAKLQDE 387
|
250
....*....|....
gi 48476349 713 IEKLQQELANIGQK 726
Cdd:PHA02562 388 LDKIVKTKSELVKE 401
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
395-802 |
3.11e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.54 E-value: 3.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 395 IELEQEKNTELMDLRQQNQALEKQLEKMRKFLDEQaidreherdvfQQEIQKLEQQLKVvprfqpISEHQTREVEQLANH 474
Cdd:TIGR04523 210 IQKNKSLESQISELKKQNNQLKDNIEKKQQEINEK-----------TTEISNTQTQLNQ------LKDEQNKIKKQLSEK 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 475 LKEKTDKCSELllskEQLQRDIQERNEEIEKLEfrvRELEQALLVSADTFQKVEDRKhfgaveakpELSLEVQLQAERDA 554
Cdd:TIGR04523 273 QKELEQNNKKI----KELEKQLNQLKSEISDLN---NQKEQDWNKELKSELKNQEKK---------LEEIQNQISQNNKI 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 555 IDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDAMSTQDQh 634
Cdd:TIGR04523 337 ISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIK- 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 635 vlfgKFAQIIQEKEVEIDQLNEQVTKLQQQLK-----ITTDNKVIEEKNELIRDLETQIECLMSDQECVKRNREE---EI 706
Cdd:TIGR04523 416 ----KLQQEKELLEKEIERLKETIIKNNSEIKdltnqDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQkqkEL 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 707 EQLNEVIEKLQQELANIGQKTSmnahSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFK--MNQLT 784
Cdd:TIGR04523 492 KSKEKELKKLNEEKKELEEKVK----DLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEkeIDEKN 567
|
410
....*....|....*...
gi 48476349 785 QELFSLKRERESVEKIQS 802
Cdd:TIGR04523 568 KEIEELKQTQKSLKKKQE 585
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
536-606 |
3.26e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 3.26e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 48476349 536 VEAKPELsLEVQLQAERDaIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQ 606
Cdd:PRK12704 60 LEAKEEI-HKLRNEFEKE-LRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEK 128
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
547-792 |
3.30e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 3.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 547 QLQAERDAIDRKEKEITNLEEQLEQFrEELENKNEEVQQLHMQLEIQKKE-STTRLQELEQENKLFKDDMEKLGLAIKES 625
Cdd:COG4913 229 ALVEHFDDLERAHEALEDAREQIELL-EPIRELAERYAAARERLAELEYLrAALRLWFAQRRLELLEAELEELRAELARL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 626 DAMstqdqhvlfgkfaqiIQEKEVEIDQLNEQVTKLQQQLKittdnkviEEKNELIRDLETQIEclmsdqecvkrNREEE 705
Cdd:COG4913 308 EAE---------------LERLEARLDALREELDELEAQIR--------GNGGDRLEQLEREIE-----------RLERE 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 706 IEQLNEVIEKLQQELANIGqktsmnaHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKETNFKMNQLTQ 785
Cdd:COG4913 354 LEERERRRARLEALLAALG-------LPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEA 426
|
....*..
gi 48476349 786 ELFSLKR 792
Cdd:COG4913 427 EIASLER 433
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
341-739 |
3.56e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.18 E-value: 3.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 341 KAEAGPVEQ-----QLLQETEKLMKEKLEVQCQAEKVRDDL----------QKQVKALEIDVEEQVSRFIELEQEKNTEL 405
Cdd:PRK02224 199 KEEKDLHERlngleSELAELDEEIERYEEQREQARETRDEAdevleeheerREELETLEAEIEDLRETIAETEREREELA 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 406 MDLRQQNQALEKQLEKMRKFLDEQAIDR------EHERDVFQQEIQKLEQQLK----VVPRFQPISEHQTREVEQLANHL 475
Cdd:PRK02224 279 EEVRDLRERLEELEEERDDLLAEAGLDDadaeavEARREELEDRDEELRDRLEecrvAAQAHNEEAESLREDADDLEERA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 476 KEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFRVRELEQALLVSADTFQKVEDRKHFgAVEAKPEL-----SLEVQLQA 550
Cdd:PRK02224 359 EELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEE-LREERDELrereaELEATLRT 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 551 ERDAIDRKEK---------------------EITNLEEQLEQFREELENKNEEVQQLHMQLEIQK--KESTTRLQELEQE 607
Cdd:PRK02224 438 ARERVEEAEAlleagkcpecgqpvegsphveTIEEDRERVEELEAELEDLEEEVEEVEERLERAEdlVEAEDRIERLEER 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 608 nklfKDDMEKLgLAIKESdamstqdqhvlfgkfaqIIQEKEVEIDQLNEQVTKL-----QQQLKITTDNKVIEEKNELIR 682
Cdd:PRK02224 518 ----REDLEEL-IAERRE-----------------TIEEKRERAEELRERAAELeaeaeEKREAAAEAEEEAEEAREEVA 575
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 48476349 683 DLETQIECLMSDQECVKRNRE--EEIEQLNEVIEKLQQELANIGQKTSMNAHSLSEEAD 739
Cdd:PRK02224 576 ELNSKLAELKERIESLERIRTllAAIADAEDEIERLREKREALAELNDERRERLAEKRE 634
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
546-723 |
3.96e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.91 E-value: 3.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 546 VQLQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAI--K 623
Cdd:COG1579 10 LDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRnnK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 624 ESDAMSTQdqhvlfgkfaqiIQEKEVEIDQLNEQVTKLQQQlkittdnkvIEEKNELIRDLETQIECLMSDQECVKRNRE 703
Cdd:COG1579 90 EYEALQKE------------IESLKRRISDLEDEILELMER---------IEELEEELAELEAELAELEAELEEKKAELD 148
|
170 180
....*....|....*....|
gi 48476349 704 EEIEQLNEVIEKLQQELANI 723
Cdd:COG1579 149 EELAELEAELEELEAEREEL 168
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
496-769 |
4.63e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 40.68 E-value: 4.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 496 IQERNEEIEklEFRVRELEQALLVSADTFQKVedRKHFGAVEAKPELSLEVQLQAERDAIDRKEKEITNLEEqleqfreE 575
Cdd:PRK05771 33 IEDLKEELS--NERLRKLRSLLTKLSEALDKL--RSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEK-------E 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 576 LENKNEEVQQLhmqleiqkkesTTRLQELEQEnklfKDDMEKLG-LAIKESDAMSTQDQHVLFGK-FAQIIQEKEVEIDQ 653
Cdd:PRK05771 102 IKELEEEISEL-----------ENEIKELEQE----IERLEPWGnFDLDLSLLLGFKYVSVFVGTvPEDKLEELKLESDV 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 654 LNEQVTKLQQQLK---ITTDNKVIEEKNELIRDLETQI----ECLMSDQecVKRNREEEIEQLNEVIEKLQQELANIGQK 726
Cdd:PRK05771 167 ENVEYISTDKGYVyvvVVVLKELSDEVEEELKKLGFERleleEEGTPSE--LIREIKEELEEIEKERESLLEELKELAKK 244
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 48476349 727 tsmnahslseEADSLKHQLDVVIAEKLALEQQVETANEEMTFM 769
Cdd:PRK05771 245 ----------YLEELLALYEYLEIELERAEALSKFLKTDKTFA 277
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
287-570 |
5.20e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.82 E-value: 5.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 287 EKTLFERQIQEKTDIIDRLEQELLCASNRLQELEAEQQQIQEERELLSRQKEAM--------KAEAGPVEQQL------L 352
Cdd:TIGR02169 231 EKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgeeeqlrvKEKIGELEAEIaslersI 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 353 QETEKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVEEQVSRFIELE---QEKNTELMDLRQQNQALEKQLEKMRkfldEQ 429
Cdd:TIGR02169 311 AEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTeeyAELKEELEDLRAELEEVDKEFAETR----DE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 430 AIDREHERDVFQQEIQKLEQQLKvvpRFQPISEHQTREVEQLANHLKEKTDKCSELLLSKEQLQRDIQERNEEIEKLEFR 509
Cdd:TIGR02169 387 LKDYREKLEKLKREINELKRELD---RLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAAD 463
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 48476349 510 VRELEQALLVSADTFQKVEDRKHfgavEAKPELSlevQLQAERDAIDRKEKEITNLEEQLE 570
Cdd:TIGR02169 464 LSKYEQELYDLKEEYDRVEKELS----KLQRELA---EAEAQARASEERVRGGRAVEEVLK 517
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
544-782 |
7.37e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.39 E-value: 7.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 544 LEVQLQAERDAIdrkEKEITNLEEQLEQFREELENKNEEVQQLH-----MQLEIQKKESTTRLQELEQ---ENKLFKDDM 615
Cdd:COG3206 162 LEQNLELRREEA---RKALEFLEEQLPELRKELEEAEAALEEFRqknglVDLSEEAKLLLQQLSELESqlaEARAELAEA 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 616 EKLGLAIKESDAMSTQDQHVLFGkfAQIIQEKEVEIDQLNEQVTKLQQQLkiTTDNKVIEEKNELIRDLETQIEclmSDQ 695
Cdd:COG3206 239 EARLAALRAQLGSGPDALPELLQ--SPVIQQLRAQLAELEAELAELSARY--TPNHPDVIALRAQIAALRAQLQ---QEA 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 696 ECVKRNREEEIEQLNEVIEKLQQELANIGQKTSmnahslseeadslkhQLDVVIAEKLALEQQVETANEEMTFMKNVLKE 775
Cdd:COG3206 312 QRILASLEAELEALQAREASLQAQLAQLEARLA---------------ELPELEAELRRLEREVEVARELYESLLQRLEE 376
|
....*..
gi 48476349 776 TNFKMNQ 782
Cdd:COG3206 377 ARLAEAL 383
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
333-776 |
8.28e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.51 E-value: 8.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 333 LSRQKEAMKAEAGPVEQQLLQETEKLMKEKLEVQCQAEKVRDDLQKQVKALEIDVE-EQVSRFIEL-----EQEKNTEL- 405
Cdd:PTZ00121 1371 KKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKaEEKKKADEAkkkaeEAKKADEAk 1450
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 406 --MDLRQQNQALEKQLEKMRKFLD-----EQAIDREHERDVFQQEIQKLEQQLKVVPRFQPISEHQTREVEQLANHLK-- 476
Cdd:PTZ00121 1451 kkAEEAKKAEEAKKKAEEAKKADEakkkaEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKka 1530
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 477 EKTDKCSELLLSKEQLQRDIQERNEEIEKLEfRVRELEQA---------LLVSADTFQKVEDRKHFGAVEAKPELSLEVQ 547
Cdd:PTZ00121 1531 EEAKKADEAKKAEEKKKADELKKAEELKKAE-EKKKAEEAkkaeedknmALRKAEEAKKAEEARIEEVMKLYEEEKKMKA 1609
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 548 LQAERDAIDRKEKEITNLEEQLEQFREELENKNEEVQQLHMQLEIQKKESTTRLQELEQENKLFKDDMEKLGLAIKESDA 627
Cdd:PTZ00121 1610 EEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKK 1689
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 628 MSTQ-DQHVLFGKFAQIIQEKEVEIDQLNEQVTKLQQQLKITTDNKVIEEKNELIRDLETQIEclmsdqecvkRNREEEI 706
Cdd:PTZ00121 1690 AAEAlKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKD----------EEEKKKI 1759
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 48476349 707 EQLNEVIEKLQQELANigQKTSMNAHSLSEEADSLKHQLDVVIAEKLALEQQVETANEEMTFMKNVLKET 776
Cdd:PTZ00121 1760 AHLKKEEEKKAEEIRK--EKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEM 1827
|
|
| |
