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Conserved domains on  [gi|54610148|gb|AAV35166|]
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cytochrome b, partial (mitochondrion) [Notiosorex cockrumi]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-117 5.20e-91

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 267.27  E-value: 5.20e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54610148    1 MTNLRKTHPLMKIINNSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 54610148   81 YLHANGASMFFICLFLHVGRGLYYGSYLFMETWNIGV 117
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGI 117
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-117 5.20e-91

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 267.27  E-value: 5.20e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54610148    1 MTNLRKTHPLMKIINNSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 54610148   81 YLHANGASMFFICLFLHVGRGLYYGSYLFMETWNIGV 117
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGI 117
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-117 1.58e-47

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 150.98  E-value: 1.58e-47
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54610148   9 PLMKIINNSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGAS 88
Cdd:cd00284   1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                        90       100       110
                ....*....|....*....|....*....|.
gi 54610148  89 MFFICLFLHVGRGLYYGSY--LFMETWNIGV 117
Cdd:cd00284  81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGV 111
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-117 4.26e-41

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 134.43  E-value: 4.26e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54610148    18 FIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100
                  ....*....|....*....|..
gi 54610148    98 VGRGLYYG--SYLFMETWNIGV 117
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGV 102
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-107 1.67e-37

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 130.30  E-value: 1.67e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54610148   1 MTNLRKTHPLMKIIN---------NSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICR 71
Cdd:COG1290   1 MSTTKKASGLADWLDerlplaslvREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMR 80

                        90       100       110
                ....*....|....*....|....*....|....*.
gi 54610148  72 DVNYGWLIRYLHANGASMFFICLFLHVGRGLYYGSY 107
Cdd:COG1290  81 DVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY 116
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-117 5.20e-91

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 267.27  E-value: 5.20e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54610148    1 MTNLRKTHPLMKIINNSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 54610148   81 YLHANGASMFFICLFLHVGRGLYYGSYLFMETWNIGV 117
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGI 117
CYTB MTH00131
cytochrome b; Provisional
 1-117 1.36e-81

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 243.41  E-value: 1.36e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54610148    1 MTNLRKTHPLMKIINNSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 54610148   81 YLHANGASMFFICLFLHVGRGLYYGSYLFMETWNIGV 117
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGV 117
CYTB MTH00074
cytochrome b; Provisional
 1-117 2.66e-78

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 234.96  E-value: 2.66e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54610148    1 MTNLRKTHPLMKIINNSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00074   2 AHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMR 81

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 54610148   81 YLHANGASMFFICLFLHVGRGLYYGSYLFMETWNIGV 117
Cdd:MTH00074  82 NIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGV 118
CYTB MTH00119
cytochrome b; Provisional
 1-117 2.40e-77

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 232.48  E-value: 2.40e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54610148    1 MTNLRKTHPLMKIINNSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00119   2 APNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIR 81

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 54610148   81 YLHANGASMFFICLFLHVGRGLYYGSYLFMETWNIGV 117
Cdd:MTH00119  82 NLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGV 118
CYTB MTH00191
cytochrome b; Provisional
 4-117 2.85e-74

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 224.41  E-value: 2.85e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54610148    4 LRKTHPLMKIINNSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLH 83
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 54610148   84 ANGASMFFICLFLHVGRGLYYGSYLFMETWNIGV 117
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGV 114
CYTB MTH00156
cytochrome b; Provisional
 11-117 2.79e-70

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 213.88  E-value: 2.79e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54610148   11 MKIINNSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASMF 90
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100
                 ....*....|....*....|....*..
gi 54610148   91 FICLFLHVGRGLYYGSYLFMETWNIGV 117
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGV 107
CYTB MTH00034
cytochrome b; Validated
 4-117 2.54e-69

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 212.26  E-value: 2.54e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54610148    4 LRKTHPLMKIINNSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLH 83
Cdd:MTH00034   4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                         90       100       110
                 ....*....|....*....|....*....|....
gi 54610148   84 ANGASMFFICLFLHVGRGLYYGSYLFMETWNIGV 117
Cdd:MTH00034  84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGV 117
CYTB MTH00145
cytochrome b; Provisional
 1-117 1.05e-67

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 207.84  E-value: 1.05e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54610148    1 MTNLRKTHPLMKIINNSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00145   2 LSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLR 81

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 54610148   81 YLHANGASMFFICLFLHVGRGLYYGSYLFMETWNIGV 117
Cdd:MTH00145  82 SLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGV 118
CYTB MTH00016
cytochrome b; Validated
 4-117 2.99e-66

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 204.14  E-value: 2.99e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54610148    4 LRKTHPLMKIINNSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLH 83
Cdd:MTH00016   5 MRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLH 84

                         90       100       110
                 ....*....|....*....|....*....|....
gi 54610148   84 ANGASMFFICLFLHVGRGLYYGSYLFMETWNIGV 117
Cdd:MTH00016  85 ANGASFFFICLYLHIGRGIYYGSYFLMETWNIGV 118
CYTB MTH00224
cytochrome b; Provisional
 4-117 1.04e-56

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 179.73  E-value: 1.04e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54610148    4 LRKTHPLMKIINNSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLH 83
Cdd:MTH00224   5 FRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIH 84

                         90       100       110
                 ....*....|....*....|....*....|....
gi 54610148   84 ANGASMFFICLFLHVGRGLYYGSYLFMETWNIGV 117
Cdd:MTH00224  85 ANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGV 118
CYTB MTH00022
cytochrome b; Validated
 4-117 1.68e-55

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 176.82  E-value: 1.68e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54610148    4 LRKTHPLMKIINNSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLH 83
Cdd:MTH00022   3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                         90       100       110
                 ....*....|....*....|....*....|....
gi 54610148   84 ANGASMFFICLFLHVGRGLYYGSYLFMETWNIGV 117
Cdd:MTH00022  83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGV 116
CYTB MTH00053
cytochrome b; Provisional
 4-117 1.27e-53

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 171.81  E-value: 1.27e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54610148    4 LRKTHPLMKIINNSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLH 83
Cdd:MTH00053   5 IRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLH 84

                         90       100       110
                 ....*....|....*....|....*....|....
gi 54610148   84 ANGASMFFICLFLHVGRGLYYGSYLFMETWNIGV 117
Cdd:MTH00053  85 ANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGV 118
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-117 1.58e-47

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 150.98  E-value: 1.58e-47
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54610148   9 PLMKIINNSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGAS 88
Cdd:cd00284   1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                        90       100       110
                ....*....|....*....|....*....|.
gi 54610148  89 MFFICLFLHVGRGLYYGSY--LFMETWNIGV 117
Cdd:cd00284  81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGV 111
CYTB MTH00033
cytochrome b; Provisional
 4-117 1.57e-42

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 143.15  E-value: 1.57e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54610148    4 LRKTHPLMKIinNSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLH 83
Cdd:MTH00033   3 LRKTGLLEPV--NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVH 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 54610148   84 ANGASMFFICLFLHVGRGLYYGSYLFMETWNIGV 117
Cdd:MTH00033  81 ANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGV 114
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-117 4.26e-41

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 134.43  E-value: 4.26e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54610148    18 FIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100
                  ....*....|....*....|..
gi 54610148    98 VGRGLYYG--SYLFMETWNIGV 117
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGV 102
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-107 1.67e-37

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 130.30  E-value: 1.67e-37
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54610148   1 MTNLRKTHPLMKIIN---------NSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICR 71
Cdd:COG1290   1 MSTTKKASGLADWLDerlplaslvREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMR 80

                        90       100       110
                ....*....|....*....|....*....|....*.
gi 54610148  72 DVNYGWLIRYLHANGASMFFICLFLHVGRGLYYGSY 107
Cdd:COG1290  81 DVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY 116
CYTB MTH00086
cytochrome b; Provisional
 12-113 1.56e-31

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 113.88  E-value: 1.56e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54610148   12 KIINNSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASMFF 91
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100
                 ....*....|....*....|..
gi 54610148   92 ICLFLHVGRGLYYGSYLFMETW 113
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVW 102
CYTB MTH00046
cytochrome b; Validated
 10-116 4.01e-22

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 88.50  E-value: 4.01e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 54610148   10 LMKIINNSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASM 89
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100
                 ....*....|....*....|....*..
gi 54610148   90 FFICLFLHVGRGLYYGSYLFMETWNIG 116
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVG 107
PRK03735 PRK03735
cytochrome b6; Provisional
 33-107 5.70e-18

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 75.52  E-value: 5.70e-18
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 54610148   33 FGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGLYYGSY 107
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGY 118
petB CHL00070
cytochrome b6
 24-100 4.04e-13

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 62.82  E-value: 4.04e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 54610148   24 PSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGR 100
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFR 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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