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Conserved domains on  [gi|56267657|gb|AAV85418|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Motacilla alba ocularis]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.51e-166

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 467.76  E-value: 1.51e-166
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657    1 MNPQAKLIFITSLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWC 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   81 TGQWDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPMTLLYMTSPSLNPTLLTTMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLNFYLYALMTTTVFLTMNSMKVLKLSTLMTAWTKMPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATIISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHTHKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 56267657  321 TPTLIAILTTMSVTLLPASPMILAII 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.51e-166

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 467.76  E-value: 1.51e-166
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657    1 MNPQAKLIFITSLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWC 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   81 TGQWDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPMTLLYMTSPSLNPTLLTTMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLNFYLYALMTTTVFLTMNSMKVLKLSTLMTAWTKMPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATIISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHTHKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 56267657  321 TPTLIAILTTMSVTLLPASPMILAII 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 5.80e-28

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 113.29  E-value: 5.80e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  14 LLGTTITISSNHWIMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALVLF-SSMTNAWcTGQWDITQLTH 91
Cdd:COG1007 112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIAA 190

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  92 PTS------------CLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKL----PPMTLLYMTSPSLNP---T 152
Cdd:COG1007 191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqL 270

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657 153 LLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTL--LNFYL--YALMTTTVFLTMNSMK----- 223
Cdd:COG1007 271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSrkgge 350

                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 56267657 224 VLKLSTLMTAWTKMPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATIISLLSLLSLFFYLRLAY 298
Cdd:COG1007 351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 3.78e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 102.78  E-value: 3.78e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657    23 SNHWIMAWAGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWCTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657    91 HPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLL-STAMKLPPMTLLYMTSPSLNPT-----LLTTMAILSTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   165 GGWMGLNQTQIRKILAFSSISHLGWMAIILA----YNPKLTLLNFYLYALMTTTVFLTMNS-----MKVLKLSTLMTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 56267657   236 KMPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 4.52e-24

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 102.33  E-value: 4.52e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657    14 LLGTTITISSNHWIMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWCTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657    93 TSCLILT------------SAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLP---PMTLLYMTSPS----LNPTL 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFgfseAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   154 LTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLN--FYL--YALMTTTVFLTMNSMKVLK--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 56267657   227 ---LSTLMTAWTKMPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATIISLLSLLSLFFYLRLA 297
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.51e-166

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 467.76  E-value: 1.51e-166
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657    1 MNPQAKLIFITSLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWC 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   81 TGQWDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPMTLLYMTSPSLNPTLLTTMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLNFYLYALMTTTVFLTMNSMKVLKLSTLMTAWTKMPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATIISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHTHKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 56267657  321 TPTLIAILTTMSVTLLPASPMILAII 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-346 1.89e-139

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 399.18  E-value: 1.89e-139
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657    1 MNPQAKLIFITSLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWC 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   81 TGQWDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPMTLLYMTSPSlNPTLLTTMAIL 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLNFYLYALMTTTVFLTMNSMKVLKLSTLMTAWTKMPSL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATIISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHTHKP 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                        330       340
                 ....*....|....*....|....*..
gi 56267657  321 TPTL-IAILTTMSVTLLPASPMILAII 346
Cdd:MTH00135 320 QLTLpLAISTTATLMLLPLTPAILALL 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-346 5.89e-136

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 390.44  E-value: 5.89e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657    1 MNPQAKLIFITSLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWC 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   81 TGQWDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPMTLLYMTSPSLNPTLLTTMAIL 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLNFYLYALMTTTVFLTMNSMKVLKLSTLMTAWTKMPSL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATIISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHTHKP 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                        330       340
                 ....*....|....*....|....*.
gi 56267657  321 TPTLIAILTTMSVTLLPASPMILAII 346
Cdd:MTH00070 321 TNNLLSLTIILSLMLLPITPTILNLF 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-343 5.91e-118

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 344.52  E-value: 5.91e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657    1 MNPQAKLIFITSLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWC 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   81 TGQWDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPMTLLYMTSPSLNPTLLTTMAIL 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLNFYLYALMTTTVFLTMNSMKVLKLSTLMTAWTKMPSL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATIISLLSLLSLFFYLRLAYCTTITLPPhTTNHMK-QWH-TH 318
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQfEN 319

                        330       340
                 ....*....|....*....|....*
gi 56267657  319 KPTPTLIAILTTMSVTLLPASPMIL 343
Cdd:MTH00105 320 TKPMTLLPTLIILSTMLLPLTPMLS 344
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 3.55e-97

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 291.87  E-value: 3.55e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657    1 MNPQAKLIFITSLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWC 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   81 TGQWDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPMTLLYMTSPSLNPTLLTTMAIL 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLNFYLYALMTTTVFLTMNSMKVLKLSTLMTAWTKMPSL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATIISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHTHKP 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                        330       340
                 ....*....|....*....|....*.
gi 56267657  321 TPTLIAILTTMSVTLLPASPMILAII 346
Cdd:MTH00200 321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-336 7.22e-83

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 255.24  E-value: 7.22e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657    1 MNPQAKLIFITSLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWC 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   81 TGQWDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPMTLLYMTSPSLNPTLLTTMAIL 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLNFYLYALMTTTVFLTMNSMKVLKLSTLMTAWTKMPSL 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATIISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWHTHKP 320
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320

                        330
                 ....*....|....*.
gi 56267657  321 TPTLIAILTTMSVTLL 336
Cdd:MTH00041 321 ITVYGVILSILSSISI 336
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-343 1.20e-56

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 187.34  E-value: 1.20e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657    1 MNPQAKLIFITSLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWc 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   81 tgqwdITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPMTLLYMTspsLNPTLLTTMAIL 160
Cdd:MTH00160  81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLNFYLYALMTTTVFLTMNSMKVLKLSTLMTAWTKMPSL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATIISLLSLLSLFFYLRLAYcTTITLPPHTTNHMKQWHTHKP 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISY-SSLMLNYNKNKWNLKKKKNKF 311

                        330       340
                 ....*....|....*....|...
gi 56267657  321 TPTLIaILTTMSVTLLPASPMIL 343
Cdd:MTH00160 312 SLILN-FLSFISLFGLILSSLLF 333
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-340 9.41e-46

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 158.79  E-value: 9.41e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657    7 LIFITSLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSmtnawcTGQWDI 86
Cdd:MTH00011   9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   87 TQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPMTLLYMTSPSLNPTLLTTMAILSTALGG 166
Cdd:MTH00011  83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  167 WMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLNFYLYALMTTTVFLTMNSMKVLKLSTLMTAWTKMPSLNAMLLL 246
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  247 TLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATIISLLSLLSLFFYLRLAYcTTITLPPHTTNhmkqwHTHKPTPTLIA 326
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS-----LKSAPYEPKTK 316

                        330
                 ....*....|....
gi 56267657  327 ILTTMSVTLLPASP 340
Cdd:MTH00011 317 ILISMCTLSLGLIP 330
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-302 1.99e-45

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 157.74  E-value: 1.99e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657    5 AKLIFITSLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWCTGQW 84
Cdd:MTH00144   5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   85 DITqlthptscLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPMTLLYMTSPSLNP-TLLTTMAILSTA 163
Cdd:MTH00144  85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSAL 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  164 LGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLNFYLYALMTTTVFLTMnSMKVLKLSTLMTAWTKMPSLNAM 243
Cdd:MTH00144 157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSL-WSGDSGSMKDLGSLKPSYKTGLS 235

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 56267657  244 LLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATIISLLSLLSLFFYLRLAYCTTI 302
Cdd:MTH00144 236 IISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-302 1.31e-38

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 139.81  E-value: 1.31e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657    8 IFITSLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAwctgqwdIT 87
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSF-------SN 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   88 QLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPMTLLymTSPSLNPTLLTTMAILSTALGGW 167
Cdd:MTH00197  75 LYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGGI 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  168 MGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLNFYLYALMTTTVFLTMNSMKVLKLSTLMTAWTKMPSLNAMLLLT 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 56267657  248 LLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATIISLLSLLSLFFYLRLAYCTTI 302
Cdd:MTH00197 233 FLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI 287
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 5.80e-28

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 113.29  E-value: 5.80e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  14 LLGTTITISSNHWIMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALVLF-SSMTNAWcTGQWDITQLTH 91
Cdd:COG1007 112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIAA 190

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  92 PTS------------CLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKL----PPMTLLYMTSPSLNP---T 152
Cdd:COG1007 191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqL 270

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657 153 LLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTL--LNFYL--YALMTTTVFLTMNSMK----- 223
Cdd:COG1007 271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSrkgge 350

                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 56267657 224 VLKLSTLMTAWTKMPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATIISLLSLLSLFFYLRLAY 298
Cdd:COG1007 351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-296 1.70e-25

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 106.44  E-value: 1.70e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   14 LLGTTITISSNHWIMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWCTGQWDITQLTHP 92
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKA 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   93 TS------------CLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKL----PPMTLLYMTSPSLNPT---L 153
Cdd:PRK05777 193 LAdgsgnsllllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwqqV 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  154 LTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTL--LNFYL--YALMTTTVFLTMNSMK-----V 224
Cdd:PRK05777 273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFGVISLLRrkggeA 352

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 56267657  225 LKLSTLMTAWTKMPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATIISLLSLLSLFFYLRL 296
Cdd:PRK05777 353 ESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-267 3.56e-25

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 104.34  E-value: 3.56e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   13 LLLGTTITISSNHWIMAWAGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASALVLFS-------------SMTNA 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   79 WCTGQWDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPMTLLYMTSPSLNptLLTTMA 158
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  159 ILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNP----KLTLLNFYLYALMTTTVFLTMNSMKVLK--LSTLMT 232
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 56267657  233 AWTKMPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 3.78e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 102.78  E-value: 3.78e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657    23 SNHWIMAWAGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWCTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657    91 HPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLL-STAMKLPPMTLLYMTSPSLNPT-----LLTTMAILSTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIRRSLLYLPSSpfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   165 GGWMGLNQTQIRKILAFSSISHLGWMAIILA----YNPKLTLLNFYLYALMTTTVFLTMNS-----MKVLKLSTLMTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 56267657   236 KMPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 4.52e-24

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 102.33  E-value: 4.52e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657    14 LLGTTITISSNHWIMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWCTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657    93 TSCLILT------------SAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLP---PMTLLYMTSPS----LNPTL 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFgfseAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   154 LTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLN--FYL--YALMTTTVFLTMNSMKVLK--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 56267657   227 ---LSTLMTAWTKMPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATIISLLSLLSLFFYLRLA 297
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 8-267 7.33e-23

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 98.94  E-value: 7.33e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657    8 IFITSLLLGTTITISSNHWIMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWCTGQWDI 86
Cdd:MTH00199 101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   87 ----TQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPMTLLYMTSPSLNPTLLTtmAILST 162
Cdd:MTH00199 181 qginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSI 258

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  163 ALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNP----KLTLLNFYLYALMTTTVFLTMNSMKVLK--LSTLMTAWTK 236
Cdd:MTH00199 259 IYGAIGALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGLSRK 338

                        250       260       270
                 ....*....|....*....|....*....|.
gi 56267657  237 MPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199 339 NPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-282 2.08e-16

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 79.81  E-value: 2.08e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  13 LLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWCTGQWDITQLTH- 91
Cdd:COG0651 116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAr 195

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  92 ---------PTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAM-KLPP------MTLLYMTSPSLNP-TLL 154
Cdd:COG0651 196 laeldpgllLAAFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtKVGVyailrvLTLLFGADPALFLgTLL 275

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657 155 TTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLNFYLY----ALMTTTVFLTMNSMKVL----K 226
Cdd:COG0651 276 LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAAGAIERAtgtrD 355

                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 56267657 227 LSTLMTAWTKMPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATII 282
Cdd:COG0651 356 LDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVL 411
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-267 4.75e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 79.13  E-value: 4.75e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657    3 PQAKLIFITSLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAI---------EAATKYFLVQAAASALVLFS 73
Cdd:MTH00198 187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   74 SMTNAWCTGQ----WDITQLTHPTS----------CLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPM 139
Cdd:MTH00198 267 CALYFGFTGNegmlGTILSATLETTnielrqgslgYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVY 346

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  140 TLLymTSPSLNPTLLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLNFYLYA---LMTTTVF 216
Cdd:MTH00198 347 ILL--TSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAvtyLVSALAS 424

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 56267657  217 LTM----------------------NSMKVLKLSTLMTAWTKMPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00198 425 FTVictleefgtrtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
ndhB CHL00049
NADH dehydrogenase subunit 2
 7-208 4.18e-13

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 70.03  E-value: 4.18e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657    7 LIFITSLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHP-RAIEAATKYFLVQAAASALVL--FSsmtnaWCTGQ 83
Cdd:CHL00049 114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFS-----WLYGL 188

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   84 -------WDI------TQLTHPTSCLI----LTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPMTL----L 142
Cdd:CHL00049 189 sggeielQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALatriF 268

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 56267657  143 YMTSPSLNP---TLLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAI-ILAYNPK------LTLLNFYLY 208
Cdd:CHL00049 269 DIPFYFSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIgIIVGDSNdgyasmITYMLFYIF 344
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-220 1.72e-12

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 68.15  E-value: 1.72e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   50 PRAIEAATKYFLVQAAASALVLF-SSMTNAWCTGQwdiTQL--------THPTSCLILT-----SAIAMKLGLVPFHFWF 115
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLsaialaliTSPSLGLALAlvfviAGIAFKISAVPFHQWT 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  116 PEVLQGSPLTTGLLLSTAMKLP----PMTLLYMTSPSLNP---TLLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK02504 234 PDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313

                        170       180       190
                 ....*....|....*....|....*....|..
gi 56267657  189 WMAIILAYNPKLTLLNFYLYALmtttVFLTMN 220
Cdd:PRK02504 314 FVMIGLVAGTEAGYASMVFYLL----AYLFMN 341
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 7.84e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 60.11  E-value: 7.84e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   33 LEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASALVLFS---------SMTNAWCTGQWDITQLTHPTSCL-ILTSA 101
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMSENPTVVAKIALaLFIAG 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  102 IAMKLGLVPFHFWFPEVLQGSP--LTTGLLLSTAMKLPPM--TLLYMTSPSLNPT----LLTTMAILSTALGGWMGLNQT 173
Cdd:PRK08376 230 LAMKSGAVPVHMWLPDAYPAAPssISAMLLVIKQAGLYALarVLFSIYGPAINLAtvgwVIIILGCLTMFVGVAMAVVQK 309

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  174 QIRKILAFSSISHLGWMAI-----ILAY-NPKLT----------LLNFYLYALMTTTVFLT----MNSMKVLKLSTLMTA 233
Cdd:PRK08376 310 DVKRLLAYHSVSQIGYMLLglgvgLAALgDPAMAsygeialaggIYHIVNHALYKALLFLTagavIYETGTRNLNELGGL 389

                        250       260       270
                 ....*....|....*....|....*....|...
gi 56267657  234 WTKMPSLNAMLLLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376 390 ARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-198 1.64e-08

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 55.86  E-value: 1.64e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  49 HPRAIEAATKYFLVQAAASALVLFSSMTNAWCTGQW--DITQLTH-----PTSCLILTS---AIAMKLGLVPFHFWFPEV 118
Cdd:COG1008 156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplplTAQLLLFLAffiAFAVKVPMFPFHTWLPDA 235

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657 119 LQGSPLTTGLLLSTAM-KLP-------PMTLLYMTSPSLNPTLLTtMAILSTALGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:COG1008 236 HVEAPTAGSVLLAGVLlKMGgygllrfALPLFPEASAYFAPLLAA-LGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314


                ....*....
gi 56267657 191 AI-ILAYNP 198
Cdd:COG1008 315 LLgIFALNP 323
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 48-336 3.68e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 54.59  E-value: 3.68e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   48 HHPRAIEAATKYFLVQAAASALVLFS-----------SMTNAWC-TGQWDITQLTHPTSCLILTSAIAM---------KL 106
Cdd:PRK12667 158 DRGDAVEAAIKYALIGAVGTTLYFLAlaflyatfgtlNMADLSAkIRGLSFPLTGGLAGNPPLALGVALalalwaftiKA 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  107 GLVPFHFWFPEVLQGSPLTTGLLLSTAMK-------LPPMTLLYMTSPSLNPTLLTTMAIL------STALGGWMGLNQT 173
Cdd:PRK12667 238 AIFPNHFWLPDAHPAAPSPVSAMLSGLVVnvgayaiIRFLYTIFGISPSLIDFRAALSPILiilgavSAIIGALMMVVQK 317

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  174 QIRKILAFSSISHLGWMAIILAYNPKLTLLNFYLY----ALMTTTVFLT-------MNSMKVLKLSTLMTawtKMPSLNA 242
Cdd:PRK12667 318 DVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHiinhAIAKSLLFLAsgvfihaAGTRDIDELAGLGR---KMPIASF 394

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  243 MLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATIISLLSLLSLFFYLRLAYCTTITLPPHTTNhmkqwHTHKPTP 322
Cdd:PRK12667 395 AFLIGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYFRAWYSLFFGKPKSGEE-----VEHKESP 469

                        330
                 ....*....|....
gi 56267657  323 TLIAILTTMSVTLL 336
Cdd:PRK12667 470 SMSVVILVLALAVL 483
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-340 5.17e-08

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 48.79  E-value: 5.17e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 56267657   291 FFYLRLAYCTTITLPPHTTNHMKQWHTHKPTPT-LIAILTTMSVTLLPASP 340
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTlLLPTLTTLSILLLPLTP 51
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-298 9.70e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 53.34  E-value: 9.70e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   33 LEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFS-SMTNAwCTGQWDITQL--------THPTSCLILTSAIA 103
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLagalaenpTVVTAFGFVLLALA 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  104 MKLGLVPFHFWFPEVLQG-SPLTTGLLLSTAMKLP--PMTLLY--------MTSPSLNpTLLTTMAILSTALGGWMGLNQ 172
Cdd:PRK08375 214 LKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAvyALIRIYftvfggdfRFALGLG-WLLAVLALLSMLVGSLAALGQ 292

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  173 TQIRKILAFSSISHLGWMAIILAYNPKLTLLN--FYL--YALMTTTVFLTMNSMKVL----KLSTLMTAWTKMPSLNAML 244
Cdd:PRK08375 293 DDVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAAGAIEVTygtrRLSELSGLGRRMPLTAAAF 372

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 56267657  245 LLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATIISLLSLLSLFFYLRLAY 298
Cdd:PRK08375 373 AVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-275 1.87e-07

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 52.69  E-value: 1.87e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657    2 NPQAKLIFITSLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHpRAIEAATKYFLVQAAASALVLFSSMTNAWCT 81
Cdd:PRK08668  96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   82 GQWDIT-------QLTHPTSCLI----LTSAIAMKLGLVPFHFWFPEVLQGSPLT--------------TGLLLSTAMkL 136
Cdd:PRK08668 175 GTFDFAdisqgliNDTSTGFALIvflfLLAFGVAKAGIFPLHVWAPDAYSEAPQSfsavlsgqlsklgaYGFLLVLYV-L 253

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  137 PPMTLL-----YMTSPSLNpTLLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLT----LLNFYL 207
Cdd:PRK08668 254 PGTKLFsefgtYRGVPLFN-YILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGfaggLFHVFN 332

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 56267657  208 YALMTTTVFLTMNSM----KVLKLSTLMTAWTKMPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDM 275
Cdd:PRK08668 333 HALFKGLFFLIFAAViyrtGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGM 404
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 8-195 5.62e-07

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 51.08  E-value: 5.62e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657    8 IFITSLLLgttiTISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSM---TNAWctgqw 84
Cdd:PRK06458 116 LFLFTMLL----ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTIlvyANAA----- 186

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   85 diTQLTHPTSCLILTSAIAM----------------------KLGLVPFHFWFPEVLQGSP-----LTTGLLLSTAM--- 134
Cdd:PRK06458 187 --TVMGDGEMAILWTELLKHaslldptlmklafvflligfgtKVGLFPMHAWLPDAHSEAPspvsaLLSGVLLNVALyav 264

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 56267657  135 ---KlppMTLLYMTSPSLNPTLLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIILA 195
Cdd:PRK06458 265 lryY---ILIDAAIGSDFPGRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALG 325
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-196 8.06e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 50.69  E-value: 8.06e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   96 LILTSAIAmKLGLVPFHFWFPEVLQGSPLTTGLLLSTAM---------KLPPMtllYMTSPSLNPTLLTtMAILSTALGG 166
Cdd:PRK12644 208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG---FADVPVWRPTVLV-LGLATMLLGG 282

                         90       100       110
                 ....*....|....*....|....*....|
gi 56267657  167 WMGLNQTQIRKILAFSSISHLGWMAIILAY 196
Cdd:PRK12644 283 WRALRQHDLKLILAYGTVSQLGFLTVLVGI 312
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-268 9.92e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 50.32  E-value: 9.92e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657    50 PRAIEAATKYFLVQAAASALVLFSSMTNAWCTGQW----DITQLTHPTSC-----LILTSAIAMKLGLVPFHFWFPEV-- 118
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhv 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   119 ---LQGSPLTTGLLLSTA--------MKLPPMTLLYMTspslnpTLLTTMAILSTALGGWMGLNQTQIRKILAFSSISHL 187
Cdd:TIGR01972 232 eapTAGSVILAGVLLKMGtygflrfnLPLFPDASLYFA------PVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHM 305

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   188 GWMAI-ILAYNPK------LTLLNFYLY-ALMTTTVFLTMNSMKVLKLSTLMTAWTKMPSLNAMLLLTLLSLAGLPPLTG 259
Cdd:TIGR01972 306 GFVLLgIFSFNELgisgavFQMISHGLItAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSG 385


                  ....*....
gi 56267657   260 FLPKWLIIQ 268
Cdd:TIGR01972 386 FVGEFLILL 394
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-192 5.88e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 47.83  E-value: 5.88e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   13 LLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAA------SALVLFSSMTNAWCTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   87 TQLTHPT----------SCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPMTLLYMTSPSLNPT---- 152
Cdd:PRK08676 191 TELAAHAsllspsvlgaSFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSgaae 270

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 56267657  153 ----LLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAI 192
Cdd:PRK08676 271 qfsnVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLL 314
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
92-268 6.44e-06

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 47.64  E-value: 6.44e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   92 PTSCLILTSAIAMKLGLVPFhFWFPEVLQGSPLTTGLLLSTAMK-------LPPMTLLYMTSPSLNPTLLTTMAILSTAL 164
Cdd:PRK12663 207 TTIALLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVI 285

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  165 GGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLNFYLYAL----MTTTVFLTMNSMKVL----KLSTLMTAWTK 236
Cdd:PRK12663 286 GALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYLVhdmvVKTALFLIAGSLVRLtgyrSLQYLGGLYRK 365

                        170       180       190
                 ....*....|....*....|....*....|..
gi 56267657  237 MPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12663 366 EPLFGALFLILIFAIGGLPPFSGFWGKVLLVQ 397
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 96-267 2.45e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 45.88  E-value: 2.45e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   96 LILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLS-TAMKLPPMTL-----------LYMTSPSLNpTLLTTMAILSTA 163
Cdd:PRK12662 213 LFIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSgTSTKVMIYLIirivydvfkanFVFTTLPFN-NVFMILAALAIV 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  164 LGGWMGLNQTQIRKILAFSSISHLGWMAIILAYNPKLTLLNFYLY----ALMTTTVFLTMNSMK----VLKLSTLMTAWT 235
Cdd:PRK12662 292 FGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfgTTKLEDCLNLWK 371

                        170       180       190
                 ....*....|....*....|....*....|..
gi 56267657  236 KMPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662 372 SMPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-203 6.06e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 44.69  E-value: 6.06e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   55 AATKYFLVQAAASALVLFSSMTNAWCTG-------QWDITQLTHPTSCLILTS---AIAMKLGLVPFHFWFPEV-LQGSP 123
Cdd:PRK06473 158 AATKFLLYTAISGILILVSFLGLVWLSGassfdyePLRSHTLPLSTQLLLLAPilvGFGIKIPLVPFHTWLPDAhVEAST 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  124 LTTGLLLSTAMKLPPMTLL------YMTSPSLNPTLLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIILAYN 197
Cdd:PRK06473 238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAA 317


                 ....*.
gi 56267657  198 PKLTLL 203
Cdd:PRK06473 318 TPLSIL 323
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 1.17e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 44.05  E-value: 1.17e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   48 HHPRAIEAATKYFLVQAAASALVLFSSMTNAWCTGQWDITQLTHPTS---------------CLILTSAiAMKLGLVPFH 112
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSElienikghplflitlILIFIGA-AAKSAQGPFY 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  113 FWFPEVLQGSPLTTGLLLSTAMKLPPMTLLYMTSPSLNPT-----LLTTMAILSTALGGWMGLNQTQIRKILAFSSISHL 187
Cdd:PRK12649 235 IWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQL 314

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  188 GWMAIILAYNPK------LTLLNFYL--YALMTTTVFLTMN-------SMKVLKLSTLMTawtKMPSLNAMLLLTLLSLA 252
Cdd:PRK12649 315 AYLMTMYGYTTYhepglgVAAATFHLlnHATFKACLFLVAGivaheaaTRDIRKLGGLRK---EMPITFIVASIAALAMA 391

                        250
                 ....*....|.
gi 56267657  253 GLPPLTGFLPK 263
Cdd:PRK12649 392 GIPPLNGFLSK 402
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 7-194 1.56e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 43.60  E-value: 1.56e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   7 LIFITSLLLgttITISSNHWIMaWAGLEINTLAILPLISKSHH-PRAIEAATKYFLVQAAASALVLFSSMTNAWCTGQWD 85
Cdd:COG1009 118 LLFMAAMLG---LVLSDNLLLL-FVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLN 193

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  86 ITQL-----THPTSCLILTSAIAM------KLGLVPFHFWFPEVLQG-SPLTTgLLLSTAMKLPPMTLLYMTSP--SLNP 151
Cdd:COG1009 194 FSELlaaapTILSSPLLTLILLLLllgafgKSAQFPLHFWLPDAMEGpTPVSA-LLHAATMVKAGVYLLARLSPlfALSP 272

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*.
gi 56267657 152 TLLTTMAI--LSTAL-GGWMGLNQTQIRKILAFSSISHLGWMAIIL 194
Cdd:COG1009 273 VWLTVVAIigAITALfAALIALAQTDIKRVLAYSTVSQLGYMFLAL 318
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 55-270 1.72e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 43.18  E-value: 1.72e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   55 AATKYFLVQAAASALVLFSSMTNAWCTGQWDITQLTHPT-----SCLILTSAIAMKLGLVPFHFWFPEVLQGSP-----L 124
Cdd:PRK08667 163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAgilslVFLLLFLGFGIKAGIIPFHKWLPYAHPASPsnvsaL 242

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  125 TTGLLLSTAMKLPPMTLLYMTSPSLN-PTLLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLG--------WMAIILA 195
Cdd:PRK08667 243 MSGVMLKVAVYGLVRFLMDVLSPELWwGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGiilmgiglYVIFGVY 322

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  196 YNPKLTLLNF-------YLYALMTTTVFLTMNSM-------KVLKLSTLMtawTKMPSLNAMLLLTLLSLAGLPPLTGFL 261
Cdd:PRK08667 323 GLDTLALLALggalfhsLNHALFKSLLFLTAGSVvhatgtrNIEKMGGLV---KLMPYTSALFLVGAVSIAALPPFNGFA 399


                 ....*....
gi 56267657  262 PKWLIIQEL 270
Cdd:PRK08667 400 SELLLYESF 408
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-192 1.87e-04

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 43.27  E-value: 1.87e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   50 PRAIEAATKYFLVQAAASALVLFSSMTNAWC----TGQWDITQLTH---PTSCLILT-----SAIAMKLGLVPFHFWFPE 117
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLLNlplPPGVQYWLflaffIAFAVKMPMFPLHTWLPD 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  118 VLQ-----GSPLTTGLLLSTA------MKLPpmtlLYMTSPSLNPTLLTTMAILSTALGGWMGLNQTQIRKILAFSSISH 186
Cdd:PRK05846 237 AHVqaptaGSVLLAGILLKMGaygllrFSLP----LFPDASHEFAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISH 312


                 ....*.
gi 56267657  187 LGWMAI 192
Cdd:PRK05846 313 MGFVTL 318
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 109-282 4.75e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 41.83  E-value: 4.75e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  109 VPFHFWFPEVLQGSPLTTGLLLSTAMKLPPMTLLYMTSPSLNPT-----LLTTMAILSTALGGWMGLNQTQIRKILAFSS 183
Cdd:PRK12647 212 FPFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLGGTplwqtILPLFGGLTMLTGALLAVRQTDLKLILAYST 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  184 ISHLGWMAIILAYNPKLTLLNFYLY----ALMTTTVFLTMNSMK-------VLKLSTLmtaWTKMPSLNAMLLLTLLSLA 252
Cdd:PRK12647 292 VSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIIDhetgtrdITKLGGL---RRAMPITAAAALLAALSMA 368

                        170       180       190
                 ....*....|....*....|....*....|
gi 56267657  253 GLPPLTGFLPKWLIIQELTKQDMAPAATII 282
Cdd:PRK12647 369 GLPPLFGFLAKELIYEALLEAPLWSLILTV 398
PRK12650 PRK12650
DUF4040 family protein;
29-190 5.73e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 41.95  E-value: 5.73e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   29 AWaglEINTLAILPLISKSHhPRAIEAATKYFLVQAAASALVLFSSMTNAWCTGQWDITQLTHPTSCL---ILTSAIAM- 104
Cdd:PRK12650 138 AW---ELVSLASFFLIARSG-SGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGILHSDVWAekpGLTTVVAVl 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  105 -------KLGLVPFHFWFPEVLQGSPLTTGLLLSTAMKLPPMTLLYMTSPSL--NPT---LLTTMAILSTALGGWMGLNQ 172
Cdd:PRK12650 214 iavaaftKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFhdVAVwnwLLIIVGMITALMGAVFAVQK 293

                        170
                 ....*....|....*...
gi 56267657  173 TQIRKILAFSSISHLGWM 190
Cdd:PRK12650 294 TDLKKLTAYSTVSQLGWI 311
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-268 5.93e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 41.62  E-value: 5.93e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   55 AATKYFLVQAAASALVLFSSMTNAWCTGQWD------ITQ-LTHPTSCLILTSAI---AMKLGLVPFHFWFPEV-LQGSP 123
Cdd:PRK07363 158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQnLSLNTQLILLTGLLlgfGIKIPLVPLHTWLPDAyTEASP 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  124 LTTGLLLSTAMKLPPMTLLYM-------TSPSLNPTLLTTMAIlSTALGGWMGLNQTQIRKILAFSSISHLGWMAIILAY 196
Cdd:PRK07363 238 AVAILLGGVLAKLGTYGLLRFglqlfpqTWSLVAPGLAIIGTI-SVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAA 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  197 NPKLTLLN---------------FYLYALMTTTVfltmNSMKVLKLSTLMTAWTKMPSLNAMLLLTLLSLAGLPPLTGFL 261
Cdd:PRK07363 317 GTQLSLLGavaqmishglilallFHLVGIVERKV----GTRDLDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFV 392


                 ....*..
gi 56267657  262 PKWLIIQ 268
Cdd:PRK07363 393 AEFIVFQ 399
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-194 6.08e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 41.45  E-value: 6.08e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  101 AIAMKLGLVPFHFWFPEVLQGSPLTTGLLLS-TAMKLPPMTLLYMTSP-------SLNPTLLtTMAILSTALGGWMGLNQ 172
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAgILLKLGGYGLVRLSWPilplgaqNLAPAVI-AMGIVGIVYGSFATCRQ 317

                         90       100
                 ....*....|....*....|..
gi 56267657  173 TQIRKILAFSSISHLGWMAIIL 194
Cdd:MTH00226 318 IDVKRLVAYSSVAHMGLVSITL 339
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-268 8.14e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 41.17  E-value: 8.14e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   34 EINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWCTGQWDITQ-----LTHPTSCLILTSAIAMKLGL 108
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGL 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  109 V------PFHFWFPEVLQGSPLTTGLLLST-------AMKLPPMTLLYMTS--PSLNpTLLTTMAILSTALGGWMGLNQT 173
Cdd:PRK06277 210 LygsglpPFHTIKSDIYAKAKPFGSALLQTfskfvlvALMLVIFKLFGGLSyfPSAQ-GVLIALSVLAMVFGVVMALLQT 288

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  174 QIRKILAFSSISHLGWMAIILAYNPKLTL-------LNFYLYA----LMTTTVFLTMNSMKVLKLSTLMTAwtkMPSLNA 242
Cdd:PRK06277 289 DYKRLLAYHAISQGGYVAAGLALGTPLGIvagifhaINHVIYKsalfLGAGIVSYRTKTSNLRKLGGLLPV---MPVVAF 365

                        250       260
                 ....*....|....*....|....*.
gi 56267657  243 MLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK06277 366 MVLCAKLAISGVPPFNGFQSKLMLAQ 391
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-271 1.11e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 40.71  E-value: 1.11e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   33 LEINTLAILPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWCTGQWDITQLTH--PTSCLILTSAIAMKLGLVP 110
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  111 FHFWFPEVLQGSPLTTGLLLSTA-MKLPPMTLLYMTSPSLNPTL-LTTMAILSTALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK07234 203 SGLWLPLTHSEAEPPVSALLSGVvVKAGVFPLVRCALDVPGLDLiVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLG 282

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  189 WmaIILAynPKLTLLNFYLYALMTTTVFLTMNSMKVLKL----STLMTAWTKMPSLNAmllltLLSLAGLPPLTGFLPKW 264
Cdd:PRK07234 283 F--ILAA--PLVGGLYALAHGLVKSTLFLCAGALPSRNFteliSQMLGIGKWIPLTMA-----SFSIAGFPLLAGFVSKV 353


                 ....*..
gi 56267657  265 LIIQELT 271
Cdd:PRK07234 354 LTLKNLL 360
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 105-271 1.61e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 40.33  E-value: 1.61e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  105 KLGLvpfHFWFPEVLQGSPLTTGLLLSTAMKLPPMTLLYMTSPSLNPTLLTTMAI-----LSTALGGWMGLNQTQIRKIL 179
Cdd:MTH00032 241 QLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIItifgaLTAFFAATVGLVQNDLKKVI 317

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  180 AFSSISHLGWMAIILAY--NPKLTLLNFYLYALMTTTVFLTMNSMkVLKLSTLMTAWTKM-------PSLNAMLLLTLLS 250
Cdd:MTH00032 318 AYSTCSQLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLSAGSV-IHSTTVDEQDMRKMgglihsiPFTYTMMLIGSFS 396

                        170       180
                 ....*....|....*....|.
gi 56267657  251 LAGLPPLTGFLPKWLIIqELT 271
Cdd:MTH00032 397 IMGLPYLTGFYSKDLIL-ELT 416
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-197 1.68e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 40.01  E-value: 1.68e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   55 AATKYFLVQAAASALVLFSSMTNAWCTGQ--WDITQLTH---PTSCLILTS-----AIAMKLGLVPFHFWFPE------- 117
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLYagfliAFGVKLPIFPLHTWLPDahgeasa 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  118 ----VLQGSPLTTG--LLLSTAMKLPPMTLLYMtSPslnptLLTTMAILSTALGGWMGLNQTQIRKILAFSSISHLGWMA 191
Cdd:PRK12561 218 pvsmILAGVLLKMGgyALIRFNVQMLPDAHVYF-AP-----ALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVL 291


                 ....*..
gi 56267657  192 I-ILAYN 197
Cdd:PRK12561 292 LgIAAFT 298
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
52-190 2.08e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 40.01  E-value: 2.08e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657   52 AIEAATKYFLVQAAASALVLFSSMTNAWCTGQWDITQLTHPTSCLILTSAIAMKLGLV----------------PFHFWF 115
Cdd:PRK07376 171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56267657  116 PEVLQGSPLTTGLLLSTAMKLPPMTLLYMTSP--SLNPTLLTTMAILSTA---LGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:PRK07376 251 PDAMEGPTPISALIHAATMVAAGVFLVARMYPvfEQFPAVMTVIAWTGAItafLGASIALTQNDIKKGLAYSTISQLGYM 330
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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