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Conserved domains on  [gi|56681849|gb|AAW21447|]
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white pollen 1 chalcone synthase, partial [Zea mays]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03170 super family cl30450
chalcone synthase; Provisional
 1-64 4.40e-36

chalcone synthase; Provisional


The actual alignment was detected with superfamily member PLN03170:

Pssm-ID: 178714 [Multi-domain]  Cd Length: 401  Bit Score: 124.44  E-value: 4.40e-36
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 56681849    1 MAGATVTVDEVRKGQRATGPATVLAIGTATPANCVYQADYPDYYFRITKSDHLTDLKEKFKRMC 64
Cdd:PLN03170   1 MAGATVTVEEVRKAQRATGPATVLAIGTATPANCVHQADYPDYYFRITKSEHMTELKEKFKRMC 64
 
Name Accession Description Interval E-value
PLN03170 PLN03170
chalcone synthase; Provisional
 1-64 4.40e-36

chalcone synthase; Provisional


Pssm-ID: 178714 [Multi-domain]  Cd Length: 401  Bit Score: 124.44  E-value: 4.40e-36
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 56681849    1 MAGATVTVDEVRKGQRATGPATVLAIGTATPANCVYQADYPDYYFRITKSDHLTDLKEKFKRMC 64
Cdd:PLN03170   1 MAGATVTVEEVRKAQRATGPATVLAIGTATPANCVHQADYPDYYFRITKSEHMTELKEKFKRMC 64
Chal_sti_synt_N pfam00195
Chalcone and stilbene synthases, N-terminal domain; The C-terminal domain of Chalcone synthase ...
 8-64 1.18e-28

Chalcone and stilbene synthases, N-terminal domain; The C-terminal domain of Chalcone synthase is reported to be structurally similar to domains in thiolase and beta-ketoacyl synthase. The differences in activity are accounted for by differences in this N-terminal domain.


Pssm-ID: 395142  Cd Length: 225  Bit Score: 101.08  E-value: 1.18e-28
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 56681849     8 VDEVRKGQRATGPATVLAIGTATPANCVYQADYPDYYFRITKSDHLTDLKEKFKRMC 64
Cdd:pfam00195   1 SSEGRRAQRAEGKATLLAIGTATPEQCVPQETYVDYYFRDTKSEHMAELKEKFERLC 57
CHS_like cd00831
Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, ...
 20-64 1.15e-15

Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.


Pssm-ID: 238427 [Multi-domain]  Cd Length: 361  Bit Score: 68.40  E-value: 1.15e-15
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 56681849  20 PATVLAIGTATPANCVYQADYPDYYFRITKSDHLTDLKEKFKRMC 64
Cdd:cd00831   1 AATILAIGTAVPPHRVPQSELVDFYRRLFSSDHLPELKEKLKRLC 45
 
Name Accession Description Interval E-value
PLN03170 PLN03170
chalcone synthase; Provisional
 1-64 4.40e-36

chalcone synthase; Provisional


Pssm-ID: 178714 [Multi-domain]  Cd Length: 401  Bit Score: 124.44  E-value: 4.40e-36
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 56681849    1 MAGATVTVDEVRKGQRATGPATVLAIGTATPANCVYQADYPDYYFRITKSDHLTDLKEKFKRMC 64
Cdd:PLN03170   1 MAGATVTVEEVRKAQRATGPATVLAIGTATPANCVHQADYPDYYFRITKSEHMTELKEKFKRMC 64
PLN03172 PLN03172
chalcone synthase family protein; Provisional
 6-64 7.04e-32

chalcone synthase family protein; Provisional


Pssm-ID: 178716  Cd Length: 393  Bit Score: 112.84  E-value: 7.04e-32
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 56681849    6 VTVDEVRKGQRATGPATVLAIGTATPANCVYQADYPDYYFRITKSDHLTDLKEKFKRMC 64
Cdd:PLN03172   2 PSIAEIRKAQRAEGPATILAIGKATPANCVSQADYPDYYFRITNSEHMTELKEKFKRMC 60
Chal_sti_synt_N pfam00195
Chalcone and stilbene synthases, N-terminal domain; The C-terminal domain of Chalcone synthase ...
 8-64 1.18e-28

Chalcone and stilbene synthases, N-terminal domain; The C-terminal domain of Chalcone synthase is reported to be structurally similar to domains in thiolase and beta-ketoacyl synthase. The differences in activity are accounted for by differences in this N-terminal domain.


Pssm-ID: 395142  Cd Length: 225  Bit Score: 101.08  E-value: 1.18e-28
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 56681849     8 VDEVRKGQRATGPATVLAIGTATPANCVYQADYPDYYFRITKSDHLTDLKEKFKRMC 64
Cdd:pfam00195   1 SSEGRRAQRAEGKATLLAIGTATPEQCVPQETYVDYYFRDTKSEHMAELKEKFERLC 57
PLN03171 PLN03171
chalcone synthase-like protein; Provisional
 2-64 1.91e-28

chalcone synthase-like protein; Provisional


Pssm-ID: 178715 [Multi-domain]  Cd Length: 399  Bit Score: 103.93  E-value: 1.91e-28
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 56681849    2 AGATVTVDEVRKGQRATGPATVLAIGTATPANCVYQADYPDYYFRITKSDHLTDLKEKFKRMC 64
Cdd:PLN03171   4 AAAPANLGEICRAQRADGLAAVLAIGTANPANCVPQDEFPDFYFRATKSDHLTALKDKFKRIC 66
PLN03173 PLN03173
chalcone synthase; Provisional
 6-64 2.01e-28

chalcone synthase; Provisional


Pssm-ID: 178717 [Multi-domain]  Cd Length: 391  Bit Score: 103.62  E-value: 2.01e-28
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 56681849    6 VTVDEVRKGQRATGPATVLAIGTATPANCVYQADYPDYYFRITKSDHLTDLKEKFKRMC 64
Cdd:PLN03173   2 VTVDEIRKAQRAEGPATIMAIGTSTPPNCVDQSTYPDYYFRITNSEHKVELKEKFKRMC 60
CHS_like cd00831
Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, ...
 20-64 1.15e-15

Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.


Pssm-ID: 238427 [Multi-domain]  Cd Length: 361  Bit Score: 68.40  E-value: 1.15e-15
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 56681849  20 PATVLAIGTATPANCVYQADYPDYYFRITKSDHLTDLKEKFKRMC 64
Cdd:cd00831   1 AATILAIGTAVPPHRVPQSELVDFYRRLFSSDHLPELKEKLKRLC 45
PLN03168 PLN03168
chalcone synthase; Provisional
 13-64 7.73e-13

chalcone synthase; Provisional


Pssm-ID: 178712 [Multi-domain]  Cd Length: 389  Bit Score: 60.82  E-value: 7.73e-13
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 56681849   13 KGQ-RATGPATVLAIGTATPANCVYQADYPDYYFRITKSDHLTDLKEKFKRMC 64
Cdd:PLN03168   7 RGQpRAEGPACVLGIGTAVPPAEFLQSEYPDFFFNITNCGEKEALKAKFKRIC 59
PLN03169 PLN03169
chalcone synthase family protein; Provisional
 19-64 8.05e-08

chalcone synthase family protein; Provisional


Pssm-ID: 215612 [Multi-domain]  Cd Length: 391  Bit Score: 46.62  E-value: 8.05e-08
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*.
gi 56681849   19 GPATVLAIGTATPANCVYQADYPDYYFRITKSDHLtDLKEKFKRMC 64
Cdd:PLN03169  20 GKATILALGKAFPSQLVPQEYLVDGYFRDTKCDDP-ALKEKLERLC 64
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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