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Conserved domains on  [gi|66270512|gb|AAY43569|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Myioborus pictus]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 8.30e-165

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 463.53  E-value: 8.30e-165
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512    1 MNPQASLIFIISLVLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   81 TGQWDITQLTHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTSLLLSTIMKLPPITLLYMTSPSLNPTLLTTLAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYAMMTATVFLTLNTIKVLKLSTLMTAWTKIPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTKKS 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 66270512  321 TSITVAILTTMSVMLLPISPMILTIV 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 8.30e-165

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 463.53  E-value: 8.30e-165
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512    1 MNPQASLIFIISLVLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   81 TGQWDITQLTHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTSLLLSTIMKLPPITLLYMTSPSLNPTLLTTLAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYAMMTATVFLTLNTIKVLKLSTLMTAWTKIPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTKKS 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 66270512  321 TSITVAILTTMSVMLLPISPMILTIV 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 7.31e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 104.70  E-value: 7.31e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512    23 SNHWIMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512    91 HPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTSLLLSTIMKLPPITLLYMTSPSLNPT------LLTTLAILSTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   165 GGWMGLNQTQIRKILAFSSISHLGWMAIII----IYNPKLTLLNFYLYAMMTATVFL-TLNTIKVLKLSTLMTA----WT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcAGSVIYRRVHTRNIRDygglAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 66270512   236 KIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 3.70e-25

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 105.58  E-value: 3.70e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  14 VLGTTITISSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLF-SSMTNAWhTGQWDITQL-- 89
Cdd:COG1007 112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIaa 190

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  90 ---THPTSSLILTSAIAM-------KLGLVPFHFWFPEVLQGSPLTTSLLLSTIMKL----PPITLLYMTSPSLNP---T 152
Cdd:COG1007 191 alaAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqL 270

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512 153 LLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTL--LNFYL--YAMMTATVFLTLNTIK----- 223
Cdd:COG1007 271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSrkgge 350

                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 66270512 224 VLKLSTLMTAWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAY 298
Cdd:COG1007 351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 2-297 7.98e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 95.79  E-value: 7.98e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512     2 NPQASLIFIISL--VLGTTITISSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFSSMTNA 78
Cdd:TIGR01770  98 KINKFEFYILLLfaLLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIY 177

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512    79 WHTGQWDITQLTHPTSSLILT------------SAIAMKLGLVPFHFWFPEVLQGSPLTTSLLLSTIMKLP---PITLLY 143
Cdd:TIGR01770 178 GFTGSLNFEDLLLFLSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLF 257

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   144 MTSPS----LNPTLLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLN--FYL--YAMMTATV 215
Cdd:TIGR01770 258 LYILFgfseAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGA 337

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   216 FLTLNTIKVLK------LSTLMTAWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLS 289
Cdd:TIGR01770 338 FGVLSLLRSYKdewieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIG 417


                  ....*...
gi 66270512   290 LFFYLRLA 297
Cdd:TIGR01770 418 AFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 8.30e-165

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 463.53  E-value: 8.30e-165
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512    1 MNPQASLIFIISLVLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   81 TGQWDITQLTHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTSLLLSTIMKLPPITLLYMTSPSLNPTLLTTLAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYAMMTATVFLTLNTIKVLKLSTLMTAWTKIPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTKKS 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 66270512  321 TSITVAILTTMSVMLLPISPMILTIV 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-346 3.88e-140

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 401.11  E-value: 3.88e-140
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512    1 MNPQASLIFIISLVLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   81 TGQWDITQLTHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTSLLLSTIMKLPPITLLYMTSPSlNPTLLTTLAIL 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYAMMTATVFLTLNTIKVLKLSTLMTAWTKIPSL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTK-K 319
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPsT 319

                        330       340
                 ....*....|....*....|....*..
gi 66270512  320 STSITVAILTTMSVMLLPISPMILTIV 346
Cdd:MTH00135 320 QLTLPLAISTTATLMLLPLTPAILALL 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-345 2.97e-135

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 388.51  E-value: 2.97e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512    1 MNPQASLIFIISLVLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   81 TGQWDITQLTHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTSLLLSTIMKLPPITLLYMTSPSLNPTLLTTLAIL 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYAMMTATVFLTLNTIKVLKLSTLMTAWTKIPSL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTKKS 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                        330       340
                 ....*....|....*....|....*
gi 66270512  321 TSITVAILTTMSVMLLPISPMILTI 345
Cdd:MTH00070 321 TNNLLSLTIILSLMLLPITPTILNL 345
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-345 1.01e-117

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 344.14  E-value: 1.01e-117
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512    1 MNPQASLIFIISLVLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   81 TGQWDITQLTHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTSLLLSTIMKLPPITLLYMTSPSLNPTLLTTLAIL 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYAMMTATVFLTLNTIKVLKLSTLMTAWTKIPSL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPhTTNHMK-QWRTKK 319
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQFEN 319

                        330       340
                 ....*....|....*....|....*..
gi 66270512  320 STSIT-VAILTTMSVMLLPISPMILTI 345
Cdd:MTH00105 320 TKPMTlLPTLIILSTMLLPLTPMLSIL 346
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-345 1.21e-100

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 300.73  E-value: 1.21e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512    1 MNPQASLIFIISLVLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   81 TGQWDITQLTHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTSLLLSTIMKLPPITLLYMTSPSLNPTLLTTLAIL 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYAMMTATVFLTLNTIKVLKLSTLMTAWTKIPSL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTKKS 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                        330       340
                 ....*....|....*....|....*
gi 66270512  321 TSITVAILTTMSVMLLPISPMILTI 345
Cdd:MTH00200 321 SNLLVGLLLLLSILGLPLTPQLLFL 345
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-336 3.02e-79

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 246.00  E-value: 3.02e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512    1 MNPQASLIFIISLVLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   81 TGQWDITQLTHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTSLLLSTIMKLPPITLLYMTSPSLNPTLLTTLAIL 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYAMMTATVFLTLNTIKVLKLSTLMTAWTKIPSL 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTKKS 320
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320

                        330
                 ....*....|....*.
gi 66270512  321 TSITVAILTTMSVMLL 336
Cdd:MTH00041 321 ITVYGVILSILSSISI 336
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-345 1.39e-56

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 186.95  E-value: 1.39e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512    1 MNPQASLIFIISLVLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWh 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   81 tgqwdITQLTHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTSLLLSTIMKLPPITLLYMTspsLNPTLLTTLAIL 160
Cdd:MTH00160  81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYAMMTATVFLTLNTIKVLKLSTLMTAWTKIPSL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYcTTITLPPHTTNHMKQWRTKKS 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISY-SSLMLNYNKNKWNLKKKKNKF 311

                        330       340
                 ....*....|....*....|....*
gi 66270512  321 TSITVaILTTMSVMLLPISPMILTI 345
Cdd:MTH00160 312 SLILN-FLSFISLFGLILSSLLFLL 335
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-302 2.03e-44

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 155.04  E-value: 2.03e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512    5 ASLIFIISLVLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQW 84
Cdd:MTH00144   5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   85 DitqlthptSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTSLLLSTIMKLPPITLLYMTSPSLNP-TLLTTLAILSTA 163
Cdd:MTH00144  85 F--------SMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSAL 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  164 LGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYAMMTATVFLTLNTiKVLKLSTLMTAWTKIPSLNAM 243
Cdd:MTH00144 157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWS-GDSGSMKDLGSLKPSYKTGLS 235

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 66270512  244 LLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTI 302
Cdd:MTH00144 236 IISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 6-331 5.52e-43

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 151.47  E-value: 5.52e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512    6 SLIFIISLVLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSmtnawhTGQWD 85
Cdd:MTH00011   8 MFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWS 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   86 ITQLTHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTSLLLSTIMKLPPITLLYMTSPSLNPTLLTTLAILSTALG 165
Cdd:MTH00011  82 FPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAG 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  166 GWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYAMMTATVFLTLNTIKVLKLSTLMTAWTKIPSLNAMLL 245
Cdd:MTH00011 162 GLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLF 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  246 LTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYcTTITLPPHTTNhMKQWRTKKSTSITV 325
Cdd:MTH00011 242 IMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS-LKSAPYEPKTKILI 319


                 ....*.
gi 66270512  326 AILTTM 331
Cdd:MTH00011 320 SMCTLS 325
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-302 7.10e-37

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 135.18  E-value: 7.10e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512    8 IFIISLVLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTgqwdit 87
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL------ 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   88 qLTHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTSLLLSTIMKLPPITLLymTSPSLNPTLLTTLAILSTALGGW 167
Cdd:MTH00197  76 -YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGGI 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  168 MGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYAMMTATVFLTLNTIKVLKLSTlMTAWTKIPSLNAMLLLT 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQ-QYSNPESMSSNLVFLGL 231

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 66270512  248 LLSLAG-LPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTI 302
Cdd:MTH00197 232 SFLSLGgLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI 287
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 7.31e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 104.70  E-value: 7.31e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512    23 SNHWIMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512    91 HPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTSLLLSTIMKLPPITLLYMTSPSLNPT------LLTTLAILSTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   165 GGWMGLNQTQIRKILAFSSISHLGWMAIII----IYNPKLTLLNFYLYAMMTATVFL-TLNTIKVLKLSTLMTA----WT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcAGSVIYRRVHTRNIRDygglAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 66270512   236 KIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-267 3.04e-25

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 104.34  E-value: 3.04e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   13 LVLGTTITISSNHWIMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQAAASALVLFS-------------SMTNA 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   79 WHTGQWDITQLTHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTSLLLSTIMKLPPITLLYMTSPSLNptLLTTLA 158
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  159 ILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIII----IYNPKLTLLNFYLYAMMTATVFLTLNTIKVLK--LSTLMT 232
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 66270512  233 AWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 3.70e-25

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 105.58  E-value: 3.70e-25
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  14 VLGTTITISSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLF-SSMTNAWhTGQWDITQL-- 89
Cdd:COG1007 112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIaa 190

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  90 ---THPTSSLILTSAIAM-------KLGLVPFHFWFPEVLQGSPLTTSLLLSTIMKL----PPITLLYMTSPSLNP---T 152
Cdd:COG1007 191 alaAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqL 270

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512 153 LLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTL--LNFYL--YAMMTATVFLTLNTIK----- 223
Cdd:COG1007 271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSrkgge 350

                       250       260       270       280       290       300       310
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 66270512 224 VLKLSTLMTAWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAY 298
Cdd:COG1007 351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 4-267 4.58e-23

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 99.32  E-value: 4.58e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512    4 QASLIFIISLVLGTTITISSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTG 82
Cdd:MTH00199  97 QSSPILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTG 176

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   83 QWDI----TQLTHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTSLLLSTIMKLPPITLLYMTSPSLNPTLLTtlA 158
Cdd:MTH00199 177 ETSIqginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--A 254

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  159 ILSTALGGWMGLNQTQIRKILAFSSISHLGW----MAIIIIYNPKLTLLNFYLYAMMTATVFLTLNTIKVLK--LSTLMT 232
Cdd:MTH00199 255 VLSIIYGAIGALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSG 334

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 66270512  233 AWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199 335 LSRKNPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-296 2.10e-22

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 97.58  E-value: 2.10e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   14 VLGTTITISSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHP 92
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKA 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   93 TSS------------LILTSAIAMKLGLVPFHFWFPEVLQGSPLTTSLLLSTIMKL----PPITLLYMTSPSLNPT---L 153
Cdd:PRK05777 193 LADgsgnsllllfglVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwqqV 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  154 LTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTL--LNFYL--YAMMTATVFLTLNTIK-----V 224
Cdd:PRK05777 273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFGVISLLRrkggeA 352

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 66270512  225 LKLSTL-MTAWTKiPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRL 296
Cdd:PRK05777 353 ESISDFaGLSKRS-PLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 2-297 7.98e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 95.79  E-value: 7.98e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512     2 NPQASLIFIISL--VLGTTITISSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFSSMTNA 78
Cdd:TIGR01770  98 KINKFEFYILLLfaLLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIY 177

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512    79 WHTGQWDITQLTHPTSSLILT------------SAIAMKLGLVPFHFWFPEVLQGSPLTTSLLLSTIMKLP---PITLLY 143
Cdd:TIGR01770 178 GFTGSLNFEDLLLFLSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLF 257

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   144 MTSPS----LNPTLLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLN--FYL--YAMMTATV 215
Cdd:TIGR01770 258 LYILFgfseAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGA 337

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   216 FLTLNTIKVLK------LSTLMTAWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLS 289
Cdd:TIGR01770 338 FGVLSLLRSYKdewieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIG 417


                  ....*...
gi 66270512   290 LFFYLRLA 297
Cdd:TIGR01770 418 AFYYLRVV 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-267 9.29e-17

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 81.06  E-value: 9.29e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512    3 PQASLIFIISLVLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAI---------EAATKYFLTQAAASALVLFS 73
Cdd:MTH00198 187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   74 SMTNAWHTGQ----WDITQLTHPTSS----------LILTSAIAMKLGLVPFHFWFPEVLQGSPLTTSLLLSTIMKLPPI 139
Cdd:MTH00198 267 CALYFGFTGNegmlGTILSATLETTNielrqgslgyLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVY 346

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  140 TLLymTSPSLNPTLLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYAMM-------T 212
Cdd:MTH00198 347 ILL--TSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAVTylvsalaS 424

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 66270512  213 ATVFLTL------------------NTIKVLKLSTLMTAWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00198 425 FTVICTLeefgtrtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-279 1.25e-14

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 74.41  E-value: 1.25e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  13 LVLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHP 92
Cdd:COG0651 116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAR 195

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  93 TSSL----------ILTSAIAMKLGLVPFHFWFPEVLQGSPLTTSLLLSTIM-KLPP------ITLLYMTSPSLNP-TLL 154
Cdd:COG0651 196 LAELdpglllaafaLLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtKVGVyailrvLTLLFGADPALFLgTLL 275

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512 155 TTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLY----AMMTATVFLTLNTIKVL----K 226
Cdd:COG0651 276 LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAAGAIERAtgtrD 355

                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|...
gi 66270512 227 LSTLMTAWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAA 279
Cdd:COG0651 356 LDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLA 408
ndhB CHL00049
NADH dehydrogenase subunit 2
 1-208 4.14e-14

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 73.11  E-value: 4.14e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512    1 MNPQASLIFIISLVLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHP-RAIEAATKYFLTQAAASALVL--FSSM-- 75
Cdd:CHL00049 108 MAITEFLLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFSWLyg 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   76 TNAWHTGQWDI------TQLTHPTSSLI----LTSAIAMKLGLVPFHFWFPEVLQGSPLTTSLLLSTIMKLPPITL---- 141
Cdd:CHL00049 188 LSGGEIELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALatri 267

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 66270512  142 LYMTSPSLNP---TLLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIII-------YNPKLTLLNFYLY 208
Cdd:CHL00049 268 FDIPFYFSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIvgdsndgYASMITYMLFYIF 344
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-192 8.86e-13

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 68.92  E-value: 8.86e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   50 PRAIEAATKYFLTQAAASALVLF-SSMTNAWHTGQwdiTQLTHPTSSLI-------------LTSAIAMKLGLVPFHFWF 115
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLSAIALALItspslglalalvfVIAGIAFKISAVPFHQWT 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  116 PEVLQGSPLTTSLLLSTIMKLP----PITLLYMTSPSLNP---TLLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK02504 234 PDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313


                 ....
gi 66270512  189 WMAI 192
Cdd:PRK02504 314 FVMI 317
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-192 7.64e-12

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 65.87  E-value: 7.64e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  49 HPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQW--DITQLTHPTSSLILTSAI--------AMKLGLVPFHFWFPEV 118
Cdd:COG1008 156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAAPLPLTAQLLLflaffiafAVKVPMFPFHTWLPDA 235

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512 119 LQGSPLTTSLLLSTIM-KLP-------PITLLYMTSPSLNPTLLTtLAILSTALGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:COG1008 236 HVEAPTAGSVLLAGVLlKMGgygllrfALPLFPEASAYFAPLLAA-LGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314


                ..
gi 66270512 191 AI 192
Cdd:COG1008 315 LL 316
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 6.73e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 60.11  E-value: 6.73e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   33 LEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFS---------SMTNAWHTGQWDITQLTHPTSSL-ILTSA 101
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMSENPTVVAKIALaLFIAG 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  102 IAMKLGLVPFHFWFPEVLQGSP--LTTSLLLSTIMKLPPI--TLLYMTSPSLNPT----LLTTLAILSTALGGWMGLNQT 173
Cdd:PRK08376 230 LAMKSGAVPVHMWLPDAYPAAPssISAMLLVIKQAGLYALarVLFSIYGPAINLAtvgwVIIILGCLTMFVGVAMAVVQK 309

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  174 QIRKILAFSSISHLGWM------AIIIIYNPKLT----------LLNFYLYAMMTATVFLT-------LNTIKVLKLSTL 230
Cdd:PRK08376 310 DVKRLLAYHSVSQIGYMllglgvGLAALGDPAMAsygeialaggIYHIVNHALYKALLFLTagaviyeTGTRNLNELGGL 389

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 66270512  231 MtawTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376 390 A---RTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-194 4.45e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 54.56  E-value: 4.45e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512    50 PRAIEAATKYFLTQAAASALVLFSSMTNAW-HTGQWDITQL-THPTSS-------LILTSAIAMKLGLVPFHFWFPEVLQ 120
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFlGGGTFDLLELlNLPLPFgvqtwlfLAFFIAFAVKVPLFPLHTWLPDAHV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   121 GSPLTTSLLLSTIM-KLPP-------ITLLYMTSPSLNPtLLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAI 192
Cdd:TIGR01972 232 EAPTAGSVILAGVLlKMGTygflrfnLPLFPDASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310


                  ..
gi 66270512   193 II 194
Cdd:TIGR01972 311 GI 312
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 23-190 1.23e-07

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 53.23  E-value: 1.23e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  23 SNHWIMAWTGLEINTLAILPLISKSHH-PRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQL-----THPTSSL 96
Cdd:COG1009 130 SDNLLLLFVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELlaaapTILSSPL 209

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  97 ILTSAIAM------KLGLVPFHFWFPEVLQGsPLTTSLLL-STIMKLPPITLLYMTSP--SLNPTLLTTLAI--LSTAL- 164
Cdd:COG1009 210 LTLILLLLllgafgKSAQFPLHFWLPDAMEG-PTPVSALLhAATMVKAGVYLLARLSPlfALSPVWLTVVAIigAITALf 288

                       170       180
                ....*....|....*....|....*.
gi 66270512 165 GGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:COG1009 289 AALIALAQTDIKRVLAYSTVSQLGYM 314
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-340 1.73e-07

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 47.25  E-value: 1.73e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 66270512   291 FFYLRLAYCTTITLPPHTTNHMKQWRTKKSTSIT-VAILTTMSVMLLPISP 340
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLlLPTLTTLSILLLPLTP 51
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-194 4.77e-07

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 51.36  E-value: 4.77e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   50 PRAIEAATKYFLTQAAASALVLFSSMTNAWH----TGQWDITQLTHPTSS--------LILTSAIAMKLGLVPFHFWFPE 117
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLLNLPLPpgvqywlfLAFFIAFAVKMPMFPLHTWLPD 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  118 VLQGSPLTTSLLLSTIM-KLPPITLLYMTSPsLNP-------TLLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGW 189
Cdd:PRK05846 237 AHVQAPTAGSVLLAGILlKMGAYGLLRFSLP-LFPdashefaPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGF 315


                 ....*
gi 66270512  190 MAIII 194
Cdd:PRK05846 316 VTLGI 320
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-263 4.79e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 51.46  E-value: 4.79e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   96 LILTSAIAmKLGLVPFHFWFPEVLQGSPLTTSLLLSTIMKLPPITLL------YMTSPSLNPTLLTtLAILSTALGGWMG 169
Cdd:PRK12644 208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVarlapgFADVPVWRPTVLV-LGLATMLLGGWRA 285

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  170 LNQTQIRKILAFSSISHLGWMAIIIIYNPK------LTLLnfYLYAMMTATVFLTLNTI-------KVLKLSTLmtaWTK 236
Cdd:PRK12644 286 LRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalagLAML--LAHALFKAALFLVVGIIdhstgtrDIRKLSGL---GRR 360

                        170       180
                 ....*....|....*....|....*..
gi 66270512  237 IPSLNAMLLLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644 361 QPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-275 7.62e-07

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 50.77  E-value: 7.62e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512    2 NPQASLIFIISLVLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHpRAIEAATKYFLTQAAASALVLFSSMTNAWHT 81
Cdd:PRK08668  96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   82 GQWDIT-------QLTHPTSSLI----LTSAIAMKLGLVPFHFWFPEVLQGSPLTTSLLLS------------------T 132
Cdd:PRK08668 175 GTFDFAdisqgliNDTSTGFALIvflfLLAFGVAKAGIFPLHVWAPDAYSEAPQSFSAVLSgqlsklgaygfllvlyvlP 254

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  133 IMKLPPITLLYMTSPSLNpTLLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLT----LLNFYLY 208
Cdd:PRK08668 255 GTKLFSEFGTYRGVPLFN-YILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGfaggLFHVFNH 333

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 66270512  209 AMMTATVFLTLNTI----KVLKLSTLMTAWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDM 275
Cdd:PRK08668 334 ALFKGLFFLIFAAViyrtGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGM 404
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-194 1.48e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 49.75  E-value: 1.48e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   13 LVLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAA------SALVLFSSMTNAWHTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   87 TQLTHPTS----SLILTSAIAM------KLGLVPFHFWFPEVLQGSPLTTSLLLS-TIMKLPPITLLYMTS-------PS 148
Cdd:PRK08676 191 TELAAHASllspSVLGASFLFIfigflaKSGLVPFHTWLPAAYAKAPSVVSALLSgTVLNIGIYGILRLSAllrqsgaAE 270

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 66270512  149 LNPTLLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIII 194
Cdd:PRK08676 271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGI 316
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-298 1.58e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 49.49  E-value: 1.58e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   33 LEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFS-SMTNAwHTGQWDITQL--------THPTSSLILTSAIA 103
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLagalaenpTVVTAFGFVLLALA 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  104 MKLGLVPFHFWFPEVLQGSPLTTSLLLSTIMKLPPITLLY-----------MTSPSLNpTLLTTLAILSTALGGWMGLNQ 172
Cdd:PRK08375 214 LKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIriyftvfggdfRFALGLG-WLLAVLALLSMLVGSLAALGQ 292

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  173 TQIRKILAFSSISHLGWMAIIIIYNPKLTLLN--FYL--YAMMTATVFLTLNTIKVL----KLSTLMTAWTKIPSLNAML 244
Cdd:PRK08375 293 DDVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAAGAIEVTygtrRLSELSGLGRRMPLTAAAF 372

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 66270512  245 LLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAY 298
Cdd:PRK08375 373 AVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 20-192 3.71e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 48.39  E-value: 3.71e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   20 TISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSS----------MTNAWHTGQW-DITQ 88
Cdd:PRK06458 124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyanaatvMGDGEMAILWtELLK 203

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   89 LTHPTSSLILTSAIAM-------KLGLVPFHFWFPEVLQGSPLTTSLLLSTImkLPPITLL-----YM-----TSPSLNP 151
Cdd:PRK06458 204 HASLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPDAHSEAPSPVSALLSGV--LLNVALYavlryYIlidaaIGSDFPG 281

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 66270512  152 TLLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAI 192
Cdd:PRK06458 282 RLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
92-268 3.91e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 45.33  E-value: 3.91e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   92 PTSSLILTSAIAMKLGLVPFhFWFPEVLQGSPLTTSLLLSTIMKLPPI-------TLLYMTSPSLNPTLLTTLAILSTAL 164
Cdd:PRK12663 207 TTIALLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTKVGIyalirvfTLLFPQERELLHPLLATMAAITMVI 285

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  165 GGWMGLNQTQIRKILAFSSISHLGWM-AIIIIYNPK-LTLLNFYLY---AMMTAtVFLTLNTIKVL----KLSTLMTAWT 235
Cdd:PRK12663 286 GALGALAYKDIRRIAGYQVISSIGFIlLGLALGTPAgINGAIFYLVhdmVVKTA-LFLIAGSLVRLtgyrSLQYLGGLYR 364

                        170       180       190
                 ....*....|....*....|....*....|...
gi 66270512  236 KIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12663 365 KEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQ 397
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 55-188 6.12e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 44.72  E-value: 6.12e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   55 AATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHPTSSLILT-----SAIAMKLGLVPFHFWFPEVLQGSPLTTSLL 129
Cdd:PRK08667 163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAGILSLVflllfLGFGIKAGIIPFHKWLPYAHPASPSNVSAL 242

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 66270512  130 LSTIM-KLPPITLLYMTSPSLNP-----TLLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK08667 243 MSGVMlKVAVYGLVRFLMDVLSPelwwgVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIG 307
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-190 6.85e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 44.31  E-value: 6.85e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   55 AATKYFLTQAAASALVLFSSMTNAWHTG--QWDITQL---THPTSSLILTSA-----IAMKLGLVPFHFWFPEV-LQGSP 123
Cdd:PRK06473 158 AATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLrshTLPLSTQLLLLApilvgFGIKIPLVPFHTWLPDAhVEAST 237

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 66270512  124 LTTSLLLSTIMKLPPITLL------YMTSPSLNPTLLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:PRK06473 238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYI 310
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-267 1.38e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 43.57  E-value: 1.38e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   33 LEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFS-----SMTNAWHTGqwDITQLTHP--------TSSLILT 99
Cdd:PRK12662 139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyAITGTLNMG--DMFLIIQDlptnraiqIGVLFIM 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  100 SAIAMKLGLVPFHFWFPEVLQGSPLTTSLLLSTIMKLPPITL------------LYMTSPSLNpTLLTTLAILSTALGGW 167
Cdd:PRK12662 217 VGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLiirivydvfkanFVFTTLPFN-NVFMILAALAIVFGSV 295

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  168 MGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLY----AMMTATVFLTLNTIK----VLKLSTLMTAWTKIPS 239
Cdd:PRK12662 296 LAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfgTTKLEDCLNLWKSMPK 375

                        250       260
                 ....*....|....*....|....*...
gi 66270512  240 LNAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662 376 ITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 109-266 1.59e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 43.37  E-value: 1.59e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  109 VPFHFWFPEVLQG-SPLTTSLLLSTIMKLPpITLLYMTSPSLNPT-----LLTTLAILSTALGGWMGLNQTQIRKILAFS 182
Cdd:PRK12647 212 FPFHFWLPNAMEApTPVSAYLHSATMVKAG-IYLLARLNPVLGGTplwqtILPLFGGLTMLTGALLAVRQTDLKLILAYS 290

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  183 SISHLGWMAIIIIYNPKLTLLNFYLY----AMMTATVFLTLNTIK-------VLKLSTLmtaWTKIPSLNAMLLLTLLSL 251
Cdd:PRK12647 291 TVSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIIDhetgtrdITKLGGL---RRAMPITAAAALLAALSM 367

                        170
                 ....*....|....*
gi 66270512  252 AGLPPLTGFLPKWLI 266
Cdd:PRK12647 368 AGLPPLFGFLAKELI 382
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-194 1.81e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 43.10  E-value: 1.81e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   55 AATKYFLTQAAASALVLFSSMTNAWHTGQ--WDITQLT--HPTSSLILTS------AIAMKLGLVPFHFWFPEVLQGSPL 124
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGakSYPLALELLLyagfliAFGVKLPIFPLHTWLPDAHGEASA 217

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 66270512  125 TTSLLLSTIM-KLPPITLLYMTSPSLNPT------LLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIII 194
Cdd:PRK12561 218 PVSMILAGVLlKMGGYALIRFNVQMLPDAhvyfapALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGI 294
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 105-268 1.90e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 43.41  E-value: 1.90e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  105 KLGLvpfHFWFPEVLQGSPLTTSLLLSTIMKLPPITLLYMTSPSLNPTLLTTLAI-----LSTALGGWMGLNQTQIRKIL 179
Cdd:MTH00032 241 QLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIItifgaLTAFFAATVGLVQNDLKKVI 317

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  180 AFSSISHLGWMAIIIIY--NPKLTLLNFYLYAMMTATVFLTLNTI---------KVLKLSTLMTAwtkIPSLNAMLLLTL 248
Cdd:MTH00032 318 AYSTCSQLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLSAGSVihsttvdeqDMRKMGGLIHS---IPFTYTMMLIGS 394

                        170       180
                 ....*....|....*....|
gi 66270512  249 LSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00032 395 FSIMGLPYLTGFYSKDLILE 414
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-195 2.78e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 42.60  E-value: 2.78e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  101 AIAMKLGLVPFHFWFPEVLQGSPLTTSLLLSTI-MKLPPITLLYMTSP-------SLNPTLLtTLAILSTALGGWMGLNQ 172
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGIlLKLGGYGLVRLSWPilplgaqNLAPAVI-AMGIVGIVYGSFATCRQ 317

                         90       100
                 ....*....|....*....|...
gi 66270512  173 TQIRKILAFSSISHLGWMAIIII 195
Cdd:MTH00226 318 IDVKRLVAYSSVAHMGLVSITLV 340
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
52-190 2.91e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 42.70  E-value: 2.91e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   52 AIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHPTSSLILTSAIAMKLGLV----------------PFHFWF 115
Cdd:PRK07376 171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  116 PEVLQGSPLTTSLLLSTIMKLPPITLLYMTSP--SLNPTLLTTLAILSTA---LGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:PRK07376 251 PDAMEGPTPISALIHAATMVAAGVFLVARMYPvfEQFPAVMTVIAWTGAItafLGASIALTQNDIKKGLAYSTISQLGYM 330
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 68-218 3.55e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 42.25  E-value: 3.55e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   68 ALVLFSSMTNAWHTGQWDITQLTHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTSLLLSTIMKLPPITLLYMTSP 147
Cdd:MTH00211 180 SMVWLLLNLNSWEISQLFILNLDLTLFLLGLLLAAMGKSAQFGFHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLIRLSP 259

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 66270512  148 --SLNPTLLTT---LAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIII-IYNPKLTLLNFYLYAMMTATVFLT 218
Cdd:MTH00211 260 lfQNNQLILGAvllLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLgLNQPQLAFLHICTHAFFKAMLFMC 336
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-268 3.56e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 42.39  E-value: 3.56e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   55 AATKYFLTQAAASALVLFSSMTNAWHTGQWD------ITQLTHPTSSLILTSAI----AMKLGLVPFHFWFPEV-LQGSP 123
Cdd:PRK07363 158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQNLSLNTQLILLTGLllgfGIKIPLVPLHTWLPDAyTEASP 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  124 LTTSLLLSTIMKLPPITL------LYMTSPSLNPTLLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYN 197
Cdd:PRK07363 238 AVAILLGGVLAKLGTYGLlrfglqLFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAG 317

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  198 PKLTLLN---------------FYLYAMMTATVfltlNTIKVLKLSTLMTAWTKIPSLNAMLLLTLLSLAGLPPLTGFLP 262
Cdd:PRK07363 318 TQLSLLGavaqmishglilallFHLVGIVERKV----GTRDLDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVA 393


                 ....*.
gi 66270512  263 KWLIIQ 268
Cdd:PRK07363 394 EFIVFQ 399
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 4.56e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 42.12  E-value: 4.56e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   48 HHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHPTSS---------------LILTSAiAMKLGLVPFH 112
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELienikghplflitliLIFIGA-AAKSAQGPFY 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  113 FWFPEVLQGSPLTTSLLLSTIMKLPPITLLYMTSPSLNPT-----LLTTLAILSTALGGWMGLNQTQIRKILAFSSISHL 187
Cdd:PRK12649 235 IWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQL 314

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  188 GWMAIIIIYNPK------LTLLNFYL--YAMMTATVFLTLN-------TIKVLKLSTLMTawtKIPSLNAMLLLTLLSLA 252
Cdd:PRK12649 315 AYLMTMYGYTTYhepglgVAAATFHLlnHATFKACLFLVAGivaheaaTRDIRKLGGLRK---EMPITFIVASIAALAMA 391

                        250
                 ....*....|.
gi 66270512  253 GLPPLTGFLPK 263
Cdd:PRK12649 392 GIPPLNGFLSK 402
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 75-217 7.25e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 41.43  E-value: 7.25e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   75 MTNAW---HTGQWDITQL-------THPTSSLILtsAIAMKLGLVPFHFWFPEVLQGSPLTTSLLLSTIMKLPPITLLYM 144
Cdd:MTH00066 182 LSMAWlamNTNSWELQQIfllndnsTLPLLGLIL--AAAGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIR 259

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 66270512  145 TSPSL--NPTLLTT---LAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYN-PKLTLLNFYLYAMMTATVFL 217
Cdd:MTH00066 260 FHPLLenNQTALTIclcLGALTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLNqPQLAFFHICTHAFFKAMLFL 338
PRK12650 PRK12650
DUF4040 family protein;
29-194 9.42e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 41.18  E-value: 9.42e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   29 AWtglEINTLAILPLISKSHhPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHPTS---SLILTSAIAM- 104
Cdd:PRK12650 138 AW---ELVSLASFFLIARSG-SGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGILHSDVwaeKPGLTTVVAVl 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  105 -------KLGLVPFHFWFPEVLQGSPLTTSLLLSTIMKLPPITLLYMTSPSL--NPT---LLTTLAILSTALGGWMGLNQ 172
Cdd:PRK12650 214 iavaaftKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFhdVAVwnwLLIIVGMITALMGAVFAVQK 293

                        170       180
                 ....*....|....*....|..
gi 66270512  173 TQIRKILAFSSISHLGWMAIII 194
Cdd:PRK12650 294 TDLKKLTAYSTVSQLGWIVATI 315
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 53-188 1.04e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 40.82  E-value: 1.04e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   53 IEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHPTSSLILTS--------AIAMKLGLVPFHFWFPEVLQGSPL 124
Cdd:MTH00204 162 VRASYYFFFYTFAGSVFMLLGIFQLYSITGTTDYQILLNIKLPLSIQKwllvgfflSLAVKIPQIPFHIWLPQAHVEAPV 241

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 66270512  125 TTSLLLSTI-MKLPPITLLYMTSPSL-------NPtLLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:MTH00204 242 AGSVILAGIlLKLGGYGFLRFSWPLFpaaseyfAP-LIVMLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMG 312
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-268 1.32e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 40.40  E-value: 1.32e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   34 EINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQ-----LTHPTSSLILTSAIAMKLGL 108
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGL 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  109 V------PFHFWFPEVLQGSPLTTSLLLSTIMKLPPITLL-------YMTS--PSLNpTLLTTLAILSTALGGWMGLNQT 173
Cdd:PRK06277 210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMlvifklfGGLSyfPSAQ-GVLIALSVLAMVFGVVMALLQT 288

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  174 QIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYA----MMTATVFLTLNTI----KVLKLSTLMTAWTKIPSLNAMLL 245
Cdd:PRK06277 289 DYKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAinhvIYKSALFLGAGIVsyrtKTSNLRKLGGLLPVMPVVAFMVL 368

                        250       260
                 ....*....|....*....|...
gi 66270512  246 LTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK06277 369 CAKLAISGVPPFNGFQSKLMLAQ 391
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-271 1.47e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 40.32  E-value: 1.47e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512   33 LEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTH--PTSSLILTSAIAMKLGLVP 110
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  111 FHFWFPEVLQGSPLTTSLLLSTIM---KLPPITLLYMTSPSLNPtLLTTLAILSTALGGWMGLNQTQIRKILAFSSISHL 187
Cdd:PRK07234 203 SGLWLPLTHSEAEPPVSALLSGVVvkaGVFPLVRCALDVPGLDL-IVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQL 281

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  188 GWmaiiIIYNPKLTLLNFYLYAMMTATVFLTLNTIKVLKL----STLMTAWTKIPSLNAmllltLLSLAGLPPLTGFLPK 263
Cdd:PRK07234 282 GF----ILAAPLVGGLYALAHGLVKSTLFLCAGALPSRNFteliSQMLGIGKWIPLTMA-----SFSIAGFPLLAGFVSK 352


                 ....*...
gi 66270512  264 WLIIQELT 271
Cdd:PRK07234 353 VLTLKNLL 360
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 111-268 4.30e-03

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 38.90  E-value: 4.30e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  111 FHFWFPEVLQGSPLTTSLLLSTIMKLPPITLLYMTSP--SLNPTLL---TTLAILSTALGGWMGLNQTQIRKILAFSSIS 185
Cdd:MTH00020 229 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPlfEQAPLALiivTIVGSLTVFFAATVGLVQNDLKKVIAYSTCS 308

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 66270512  186 HLGWMAIII-IYNPKLTLLNFYLYAMMTATVFLTLNTI--------KVLKLSTLMTAwtkIPSLNAMLLLTLLSLAGLPP 256
Cdd:MTH00020 309 QLGYMVVACgLSHYSISLFHLMNHAFFKALLFLSAGSVihalsdeqDMRKMGGLISF---LPLTYIFFLIGSLSLMGFPY 385

                        170
                 ....*....|..
gi 66270512  257 LTGFLPKWLIIQ 268
Cdd:MTH00020 386 LTGFYSKDLILE 397
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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