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Conserved domains on  [gi|73915029|gb|AAZ92390|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Anopheles funestus]

Protein Classification

NADH dehydrogenase subunit 5( domain architecture ID 11475935)

NADH dehydrogenase subunit 5 (ND5/NADH5) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain; the immediate electron acceptor for the enzyme is believed to be ubiquinone

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-278 1.06e-147

NADH dehydrogenase subunit 5; Provisional


:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 425.32  E-value: 1.06e-147
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029    1 SFVLLISSLVIFYSNQYMEEDYNINRFILLVLMSVTSKKLLIISPNLISILLGSDGLGLVSYCLVIYFQNVKSYNAGMLT 80
Cdd:MTH00165  61 SFVLFISSMVIYYSKSYMSGDKNINRFIYLVLLFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYYQNKKSYNAGMLT 140

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   81 ALSNRIGDVALLLAIAWMLNYGSWNYIFYLDMMKNNFEMMIIGALVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSS 160
Cdd:MTH00165 141 ALSNRIGDVAILLSIAWMMNFGSWNFIFYLDFMKNSFEMLLIGLLIMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSS 220

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  161 TLVTAGVYLLIRFNDLLMNWWMSQFLLLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHLLT 240
Cdd:MTH00165 221 TLVTAGVYLLIRFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLT 300

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 73915029  241 HALFKALLFMCAGSIIHNMKNSQDIRMMGSLSMSMPLT 278
Cdd:MTH00165 301 HALFKALLFLCAGSIIHNMSNSQDIRFMGGLSNFMPLT 338
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-278 1.06e-147

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 425.32  E-value: 1.06e-147
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029    1 SFVLLISSLVIFYSNQYMEEDYNINRFILLVLMSVTSKKLLIISPNLISILLGSDGLGLVSYCLVIYFQNVKSYNAGMLT 80
Cdd:MTH00165  61 SFVLFISSMVIYYSKSYMSGDKNINRFIYLVLLFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYYQNKKSYNAGMLT 140

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   81 ALSNRIGDVALLLAIAWMLNYGSWNYIFYLDMMKNNFEMMIIGALVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSS 160
Cdd:MTH00165 141 ALSNRIGDVAILLSIAWMMNFGSWNFIFYLDFMKNSFEMLLIGLLIMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSS 220

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  161 TLVTAGVYLLIRFNDLLMNWWMSQFLLLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHLLT 240
Cdd:MTH00165 221 TLVTAGVYLLIRFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLT 300

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 73915029  241 HALFKALLFMCAGSIIHNMKNSQDIRMMGSLSMSMPLT 278
Cdd:MTH00165 301 HALFKALLFLCAGSIIHNMSNSQDIRFMGGLSNFMPLT 338
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 3-278 6.73e-76

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 241.98  E-value: 6.73e-76
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   3 VLLISSLVIFYSNQYMEEDYNINRFILLVLMSVTSKKLLIISPNLISILLGSDGLGLVSYCLVIYFQNVKSYNAGMLTA- 81
Cdd:COG1009  89 VTGVGLLVHIYSIGYMSGDPGLARFFAYLLLFMAAMLGLVLSDNLLLLFVFWELVGLCSYLLIGFWYEKPSARRAARKAf 168

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  82 LSNRIGDVALLLAIAWMLNY-GSWNY--IF-YLDMMKNNFEMMIIGALVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALV 157
Cdd:COG1009 169 LVTRVGDLGLLLGILLLGAIaGTLNFseLLaAAPTILSSPLLTLILLLLLLGAFGKSAQFPLHFWLPDAMEGPTPVSALL 248

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029 158 HSSTLVTAGVYLLIRFNDLLM--NWWMSqFLLLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAF 235
Cdd:COG1009 249 HAATMVKAGVYLLARLSPLFAlsPVWLT-VVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAAL 327

                       250       260       270       280
                ....*....|....*....|....*....|....*....|...
gi 73915029 236 FHLLTHALFKALLFMCAGSIIHNMkNSQDIRMMGSLSMSMPLT 278
Cdd:COG1009 328 FHLLTHAFFKALLFLGAGSVIHAT-GTRDIRKMGGLRKKMPIT 369
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 3-278 4.58e-66

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 216.38  E-value: 4.58e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029     3 VLLISSLVIFYSNQYMEEDYNINRFILLVLMSVTSKKLLIISPNLISILLGSDGLGLVSYCLV-IYFQNVKSYNAGMLTA 81
Cdd:TIGR01974  92 VTGVGSLVHIYSIGYMAHDEGYSRFFAYLNLFTFSMLMLVLADNFLQLFFGWEGVGLCSYLLIgFWYKKPSANNAAIKAF 171

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029    82 LSNRIGDVALLLAIAWMLNY-GSWNYIFYLDMMKNNFE--MMIIGALVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVH 158
Cdd:TIGR01974 172 VVNRVGDFGLLLGIFLIFWYfGTLNFQEVFALAPGAFFsaLTLICLLLFIGAMGKSAQLPLHTWLPDAMEGPTPVSALIH 251

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   159 SSTLVTAGVYLLIRFNDL-LMNWWMSQFLLLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFH 237
Cdd:TIGR01974 252 AATMVTAGVYLVARTSPLfELSPTALYLVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFH 331

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 73915029   238 LLTHALFKALLFMCAGSIIHNMKNSQDIRMMGSLSMSMPLT 278
Cdd:TIGR01974 332 LMTHAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVT 372
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 44-278 3.13e-55

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 179.82  E-value: 3.13e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029    44 SPNLISILLGSDGLGLVSYCLVIYF-QNVKSYNAGMLTALSNRIGDVALLLAIAWMLNYGSWNYIFYL----DMMKNNFE 118
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWgKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskalTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   119 MMIIGALVMLAAMTKSAQIPFSSWLPAA-MAAPTPVSALVhSSTLVTAGVYLLIRFNDLLM--NWWMSQFLLLVSGLTMF 195
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAyEGAPTPVSALL-AATLVKAGGYGLIRRSLLYLpsSPFIQQILLILAIISML 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   196 MAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGF---YKLAFFHLLTHALFKALLFMCAGSIIHNMKNSQDIRMMGSLS 272
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTiygIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRDYGGLA 239


                  ....*.
gi 73915029   273 MSMPLT 278
Cdd:pfam00361 240 KTMPIL 245
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-278 1.06e-147

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 425.32  E-value: 1.06e-147
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029    1 SFVLLISSLVIFYSNQYMEEDYNINRFILLVLMSVTSKKLLIISPNLISILLGSDGLGLVSYCLVIYFQNVKSYNAGMLT 80
Cdd:MTH00165  61 SFVLFISSMVIYYSKSYMSGDKNINRFIYLVLLFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYYQNKKSYNAGMLT 140

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   81 ALSNRIGDVALLLAIAWMLNYGSWNYIFYLDMMKNNFEMMIIGALVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSS 160
Cdd:MTH00165 141 ALSNRIGDVAILLSIAWMMNFGSWNFIFYLDFMKNSFEMLLIGLLIMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSS 220

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  161 TLVTAGVYLLIRFNDLLMNWWMSQFLLLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHLLT 240
Cdd:MTH00165 221 TLVTAGVYLLIRFNNLLFSSFFSKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLT 300

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 73915029  241 HALFKALLFMCAGSIIHNMKNSQDIRMMGSLSMSMPLT 278
Cdd:MTH00165 301 HALFKALLFLCAGSIIHNMSNSQDIRFMGGLSNFMPLT 338
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 1-278 1.30e-115

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 343.36  E-value: 1.30e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029    1 SFVLLISSLVIFYSNQYMEEDYNINRFILLVLMSVTSKKLLIISPNLISILLGSDGLGLVSYCLVIYFQNVKSYNAGMLT 80
Cdd:MTH00151  61 GVVCLISGCVFLFSSSYMSEDPFLKRFMWLVMLFVLSMNLLIFIPSLPSLLLGWDGLGIVSFALVIYYQNKKSLSAGMLT 140

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   81 ALSNRIGDVALLLAIAWMLNYGSWNYIFYLDMMKnnfeMMIIGALVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSS 160
Cdd:MTH00151 141 ALTNRIGDVLILLSIALLVLLGHWSILSMWDFKL----SGWLGLLLVLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSS 216

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  161 TLVTAGVYLLIRFNDLL-MNWWMSQFLLLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHLL 239
Cdd:MTH00151 217 TLVTAGVFLLIRFFPFLsSSSGFSSFLLFISLLTLLMAGISACYENDLKKIIALSTLSQLGVMMFSLGLGMPSLALFHLY 296

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 73915029  240 THALFKALLFMCAGSIIHNMKNSQDIRMMGSLSMSMPLT 278
Cdd:MTH00151 297 THALFKALLFLCAGSIIHSSSGTQDIRLLGSLFLSLPLT 335
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-278 8.96e-106

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 318.13  E-value: 8.96e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029    1 SFVLLISSLVIFYSNQYMEEDYNINRFILLVLMSVTSKKLLIISPNLISILLGSDGLGLVSYCLVIYFQNVKSYNAGMLT 80
Cdd:MTH00209  59 SVVLLISGSVMWFSTSYMAGEKFKKRFILLVLLFILSMNFLIFVPNLITLLLGWDGLGLVSYLLVIYYQNSKSLSAGMLT 138

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   81 ALSNRIGDVALLLAIAWMLNYGSWNyIFYLDMMKNNfeMMIIGALVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSS 160
Cdd:MTH00209 139 ALTNRVGDALLILSIAWMLMHGNWN-IFYLNFNSNL--GSVISVLIVLAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSS 215

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  161 TLVTAGVYLLIRFNDLLMNWWMSQF-LLLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHLL 239
Cdd:MTH00209 216 TLVTAGVYLLIRFFPSLFSSPFFSMsLLLLGSLTTLMASMSANVESDLKKIIALSTLSQLGLMMCSLGLNQPELAFFHLI 295

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 73915029  240 THALFKALLFMCAGSIIHNMKNSQDIRMMGSLSMSMPLT 278
Cdd:MTH00209 296 THALFKALLFICAGNIIHSHGHSQDIRMVGNLWYQMPIT 334
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-278 2.00e-104

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 314.78  E-value: 2.00e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029    1 SFVLLISSLVIFYSNQYMEEDYNINRFILLVLMSVTSKKLLIISPNLISILLGSDGLGLVSYCLVIYFQNVKSYNAGMLT 80
Cdd:MTH00207  64 STVLFISANVLLFAKTYMQEDKFLSRFISLVLLFVLSMNMLIFFPHLMILLLGWDGLGLVSFILVIYYQNPKSLGAGMIT 143

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   81 ALSNRIGDVALLLAIAWMLNYGSWNYIfylDMMKNNFEMMIIGAlVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSS 160
Cdd:MTH00207 144 ALTNRIGDVMLLLSIGWTLNQGHWSIT---NMWQTDMNNYIALS-IMIAAMTKSAQMPFSSWLPAAMAAPTPVSALVHSS 219

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  161 TLVTAGVYLLIRFNDLLMN-WWMSQFLLLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHLL 239
Cdd:MTH00207 220 TLVTAGVFLLIRFYPFLSStYWFNPALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGMPKLALFHLI 299

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 73915029  240 THALFKALLFMCAGSIIHNMKNSQDIRMMGSLSMSMPLT 278
Cdd:MTH00207 300 THALFKALLFVCAGSLIHSHHHSQDLRTMGNLTNQMPLT 338
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 4-278 6.13e-77

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 244.48  E-value: 6.13e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029    4 LLISSLVIFYSNQYMEEDYNINRFILLVLMSVTSKKLLIISPNLISILLGSDGLGLVSYCLVIYFQNVKSYNAGMLTAL- 82
Cdd:MTH00211  89 LYVTWSILEFSLWYMSSEPNINRFFKYLLLFLIFMLILVSANNLFQLFIGWEGVGIMSFLLISWWYGRSDANTAALQAVi 168

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   83 SNRIGDVALLLAIAWML-NYGSWNYIFYLDMMKNNFEMMIigaLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSST 161
Cdd:MTH00211 169 YNRIGDIGLLLSMVWLLlNLNSWEISQLFILNLDLTLFLL---GLLLAAMGKSAQFGFHPWLPSAMEGPTPVSALLHSST 245

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  162 LVTAGVYLLIRFNDLLMNWWMSQ-FLLLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHLLT 240
Cdd:MTH00211 246 MVVAGVFLLIRLSPLFQNNQLILgAVLLLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGLNQPQLAFLHICT 325

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 73915029  241 HALFKALLFMCAGSIIHNMKNSQDIRMMGSLSMSMPLT 278
Cdd:MTH00211 326 HAFFKAMLFMCSGSIIHGLNNEQDIRKMGGLSKNLPFT 363
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 3-278 6.73e-76

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 241.98  E-value: 6.73e-76
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   3 VLLISSLVIFYSNQYMEEDYNINRFILLVLMSVTSKKLLIISPNLISILLGSDGLGLVSYCLVIYFQNVKSYNAGMLTA- 81
Cdd:COG1009  89 VTGVGLLVHIYSIGYMSGDPGLARFFAYLLLFMAAMLGLVLSDNLLLLFVFWELVGLCSYLLIGFWYEKPSARRAARKAf 168

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  82 LSNRIGDVALLLAIAWMLNY-GSWNY--IF-YLDMMKNNFEMMIIGALVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALV 157
Cdd:COG1009 169 LVTRVGDLGLLLGILLLGAIaGTLNFseLLaAAPTILSSPLLTLILLLLLLGAFGKSAQFPLHFWLPDAMEGPTPVSALL 248

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029 158 HSSTLVTAGVYLLIRFNDLLM--NWWMSqFLLLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAF 235
Cdd:COG1009 249 HAATMVKAGVYLLARLSPLFAlsPVWLT-VVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAAL 327

                       250       260       270       280
                ....*....|....*....|....*....|....*....|...
gi 73915029 236 FHLLTHALFKALLFMCAGSIIHNMkNSQDIRMMGSLSMSMPLT 278
Cdd:COG1009 328 FHLLTHAFFKALLFLGAGSVIHAT-GTRDIRKMGGLRKKMPIT 369
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 3-278 4.58e-66

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 216.38  E-value: 4.58e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029     3 VLLISSLVIFYSNQYMEEDYNINRFILLVLMSVTSKKLLIISPNLISILLGSDGLGLVSYCLV-IYFQNVKSYNAGMLTA 81
Cdd:TIGR01974  92 VTGVGSLVHIYSIGYMAHDEGYSRFFAYLNLFTFSMLMLVLADNFLQLFFGWEGVGLCSYLLIgFWYKKPSANNAAIKAF 171

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029    82 LSNRIGDVALLLAIAWMLNY-GSWNYIFYLDMMKNNFE--MMIIGALVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVH 158
Cdd:TIGR01974 172 VVNRVGDFGLLLGIFLIFWYfGTLNFQEVFALAPGAFFsaLTLICLLLFIGAMGKSAQLPLHTWLPDAMEGPTPVSALIH 251

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   159 SSTLVTAGVYLLIRFNDL-LMNWWMSQFLLLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFH 237
Cdd:TIGR01974 252 AATMVTAGVYLVARTSPLfELSPTALYLVTIIGAITALFAATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFH 331

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 73915029   238 LLTHALFKALLFMCAGSIIHNMKNSQDIRMMGSLSMSMPLT 278
Cdd:TIGR01974 332 LMTHAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVT 372
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 13-278 3.75e-64

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 211.18  E-value: 3.75e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   13 YSNQYMEEDYNINRFILLVLMSVTSKKLLIISPNLISILLGSDGLGLVSYCLVIYFQNVKSYNAGMLTA-LSNRIGDVAL 91
Cdd:MTH00004 103 FSTWYMASDPHITKFFKYLLIFLIAMLILITANNMFQLFIGWEGVGIMSFLLIGWWSGRAEANTAALQAiIYNRIGDIGL 182

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   92 LLAIAWM-LNYGSWNyIFYLDMMKNNFEMMIIGalVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLL 170
Cdd:MTH00004 183 ILSMAWLaMTLNTWE-IQQLFSPTQTPTLPLLG--LILAATGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLL 259

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  171 IRFNDLLMN--WWMSQFLLLVSGLTMFMAgLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHLLTHALFKALL 248
Cdd:MTH00004 260 IRTHPLLQNnqTALTICLCLGALTTLFAA-TCALTQNDIKKIIAFSTSSQLGLMMVTIGLNQPQLAFLHISTHAFFKAML 338

                        250       260       270
                 ....*....|....*....|....*....|
gi 73915029  249 FMCAGSIIHNMKNSQDIRMMGSLSMSMPLT 278
Cdd:MTH00004 339 FLCSGSIIHNLNNEQDIRKMGGLQKTLPIT 368
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 3-278 6.84e-63

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 208.47  E-value: 6.84e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029    3 VLLISSLVIFYSNQYMEEDYNINRFILLVLMSVTSKKLLIISPNLISILLGSDGLGLVSYCLV-IYFQNVKSYNAGMLTA 81
Cdd:PRK06590  93 VTGVSFLVHIYSIGYMAHDEGYRRFFAYLNLFTFSMLMLVLSDNLLQLFFGWEGVGLCSYLLIgFWYKKPSAGAAAMKAF 172

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   82 LSNRIGDVALLLAIAWMLNY-GSWNY--IFYLDMMKNNFE---MMIIGALVMLAAMTKSAQIPFSSWLPAAMAAPTPVSA 155
Cdd:PRK06590 173 IVNRVGDVGLALGIFLLFAEfGSLNYdeVFAAAPQFFGLGwsaLTLICLLLFIGAMGKSAQFPLHTWLPDAMEGPTPVSA 252

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  156 LVHSSTLVTAGVYLLIRFNDL-LMNWWMSQFLLLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLA 234
Cdd:PRK06590 253 LIHAATMVTAGVYLVARMSPLfELSPEALLFVAIVGAVTALFAAFIGLVQTDIKRVLAYSTMSQLGYMFLALGVGAYAAA 332

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 73915029  235 FFHLLTHALFKALLFMCAGSIIHNMKNSQDIRMMGSLSMSMPLT 278
Cdd:PRK06590 333 IFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVT 376
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 17-278 1.75e-62

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 206.63  E-value: 1.75e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   17 YMEEDYNINRFILLVLMSVTSKKLLIISPNLISILLGSDGLGLVSYCLVIYFQNVKSYNAGMLTA-LSNRIGDVALLLAI 95
Cdd:MTH00108 107 YMHSDPNINRFFKYLLLFLITMLILVTANNLFQLFIGWEGVGIMSFLLIGWWYGRTDANTAALQAiLYNRIGDIGFILAM 186

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   96 AW-MLNYGSWNY--IFYLDMMKNNFEMMiiGALvmLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIR 172
Cdd:MTH00108 187 AWfLLNLNSWDLqqIFMLNPNNSNLPLM--GLL--LAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLIR 262

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  173 FNDLLMNWWMSQFLLLVSG--LTMFMAgLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHLLTHALFKALLFM 250
Cdd:MTH00108 263 FHPLMENNKTIQTLTLCLGaiTTLFTA-ICALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLFM 341

                        250       260
                 ....*....|....*....|....*...
gi 73915029  251 CAGSIIHNMKNSQDIRMMGSLSMSMPLT 278
Cdd:MTH00108 342 CSGSIIHNLNDEQDIRKMGGLFKTLPFT 369
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 13-278 7.02e-60

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 199.75  E-value: 7.02e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   13 YSNQYMEEDYNINRFILLVLMSVTSKKLLIISPNLISILLGSDGLGLVSYCLV-IYFQNVKSYNAGMLTALSNRIGDVAL 91
Cdd:MTH00066 101 FAIWYMHSDPKINRFFKYLLIFLIAMMILVTANNLFQLFIGWEGVGIMSFLLIgWWHARADANTAALQAVLYNRVGDIGL 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   92 LLAIAW-MLNYGSW--NYIFyldMMKNNFEMMIIGalVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVY 168
Cdd:MTH00066 181 ILSMAWlAMNTNSWelQQIF---LLNDNSTLPLLG--LILAAAGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIF 255

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  169 LLIRFNDLLMNWWMSQFLLLVSG-LTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHLLTHALFKAL 247
Cdd:MTH00066 256 LLIRFHPLLENNQTALTICLCLGaLTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFFHICTHAFFKAM 335

                        250       260       270
                 ....*....|....*....|....*....|.
gi 73915029  248 LFMCAGSIIHNMKNSQDIRMMGSLSMSMPLT 278
Cdd:MTH00066 336 LFLCSGSIIHSLNDEQDIRKMGGLQKALPIT 366
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 4-278 3.44e-58

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 195.96  E-value: 3.44e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029    4 LLISSLVIFYSNQYMEEDYNINRFILLVLMSVTSKKLLIISPNLISILLGSDGLGLVSYCLVIYFQNVKSYNAGMLTA-L 82
Cdd:MTH00208 117 LFVTWSIIEFSHYYMSNDPNKNAFFRLLIIFLLNMLILTSSNNLFLLFIGWEGVGFLSFLLISWWTTRNDANSSALQAvI 196

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   83 SNRIGDVALLLAIAW-MLNYGSWNY--IFYLDMMKNNF-EMMIIGALvmLAAMTKSAQIPFSSWLPAAMAAPTPVSALVH 158
Cdd:MTH00208 197 YNRIGDIGIILFLSLsLINFNSWNLneILSLNNSNSFLiNILLFGIL--LAAAGKSAQFGLHPWLPAAMEGPTPVSALLH 274

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  159 SSTLVTAGVYLLIRFNDLLMNW-WMSQFLLLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFH 237
Cdd:MTH00208 275 SSTMVVAGVFLLIRTSPLISNSpWFLSLCLILGSLTALFAASTAISQHDIKKIIAYSTTSQLGLMVVAIGLNQPNLALFH 354

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 73915029  238 LLTHALFKALLFMCAGSIIHNMKNSQDIRMMGSLSMSMPLT 278
Cdd:MTH00208 355 ICTHAFFKAMLFLCSGSIIHSLNNEQDLRKMGGLSFLLPVT 395
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
 4-273 5.16e-56

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 188.20  E-value: 5.16e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029    4 LLISSLVIFYSNQYMEEDYNINRFILLVLMSVTSKKLLIISPNLISILLGSDGLGLVSYCLVIYFQNVKSYNAGMLTALS 83
Cdd:MTH00095  55 LLVTLSVLVFSSYYMNGELNFNYFYFVLLIFVGSMFMLNFSNSVFTMLLSWDLLGISSFFLVLFYNNWDSNSGAMNTALT 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   84 NRIGDVALLLAIAWMLNYGSwnyiFYLDMMKNNFEMMIigaLVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLV 163
Cdd:MTH00095 135 NRIGDFFIFLFFSGFIFSSY----YFFSFSFFSSSMIL---MLLLTSFTKSAQFPFSSWLPKAMSAPTPVSSLVHSSTLV 207

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  164 TAGVYLLIRFNDLLMNWWMSQFLLLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHLLTHAL 243
Cdd:MTH00095 208 TAGLILLMNFSYLILNMNVMKIMLLIGLFTMFFSSLSALVEEDMKKVVALSTLSQMGFSMLTFGSGLSFVSFIHLLSHAL 287

                        250       260       270
                 ....*....|....*....|....*....|
gi 73915029  244 FKALLFMCAGSIIHNMKNSQDIRMMGSLSM 273
Cdd:MTH00095 288 FKSCLFMQVGYLIHSNFGQQDGRNYSNNGN 317
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 17-278 1.74e-55

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 188.50  E-value: 1.74e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   17 YMEEDYNINRFILLVLMSVTSKKLLIISPNLISILLGSDGLGLVSYCLVIYFQNVKSYNAGMLTA-LSNRIGDVALLLAI 95
Cdd:MTH00137 111 YMHADPNMNRFFKYLLIFLIAMIILVTANNMFQLFIGWEGVGIMSFLLIGWWYGRADANTAALQAvIYNRVGDIGLILAM 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   96 AWML-NYGSWNY--IFYLdmmKNNFEMMIIGALVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIR 172
Cdd:MTH00137 191 AWMAtNLNSWEIqqIFAL---SKDFDLTLPLLGLILAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIR 267

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  173 FNDLLMNWWMSQFLLLVSG--LTMFMA--GLGANfefDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHLLTHALFKALL 248
Cdd:MTH00137 268 LSPLMENNQTALTTCLCLGalTTLFTAtcALTQN---DIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAML 344

                        250       260       270
                 ....*....|....*....|....*....|
gi 73915029  249 FMCAGSIIHNMKNSQDIRMMGSLSMSMPLT 278
Cdd:MTH00137 345 FLCSGSIIHSLNDEQDIRKMGGLHHLTPFT 374
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 3-278 2.33e-55

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 187.98  E-value: 2.33e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029    3 VLLISSLVIFYSNQYMEEDYNINRFILLVLMSVTSKKLLIISPNLISILLGSDGLGLVSYCLV-IYFQNVKSYNAGMLTA 81
Cdd:MTH00020  89 VTTVSTLVHIFSTAYMRGDPHIPRFMSYLSLFTFLMVVLVTSDNYLQLFIGWEGVGLCSYLLInFWLTRIEANKAAIKAM 168

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   82 LSNRIGDVALLLAIAWMLN-YGSWNY--IFYLDMMKNNFEMMIIGALVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVH 158
Cdd:MTH00020 169 LVNRVGDIGLLLAMFLLWDrFGSLDFssVFNMVVSAPSSDITLICLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIH 248

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  159 SSTLVTAGVYLLIRFNDLLMNWWMSQFLLLVSG-LTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFH 237
Cdd:MTH00020 249 AATMVTAGVFLLIRSSPLFEQAPLALIIVTIVGsLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGLSHYSISLFH 328

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 73915029  238 LLTHALFKALLFMCAGSIIHNMKNSQDIRMMGSLSMSMPLT 278
Cdd:MTH00020 329 LMNHAFFKALLFLSAGSVIHALSDEQDMRKMGGLISFLPLT 369
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 44-278 3.13e-55

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 179.82  E-value: 3.13e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029    44 SPNLISILLGSDGLGLVSYCLVIYF-QNVKSYNAGMLTALSNRIGDVALLLAIAWMLNYGSWNYIFYL----DMMKNNFE 118
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWgKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskalTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   119 MMIIGALVMLAAMTKSAQIPFSSWLPAA-MAAPTPVSALVhSSTLVTAGVYLLIRFNDLLM--NWWMSQFLLLVSGLTMF 195
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAyEGAPTPVSALL-AATLVKAGGYGLIRRSLLYLpsSPFIQQILLILAIISML 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   196 MAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGF---YKLAFFHLLTHALFKALLFMCAGSIIHNMKNSQDIRMMGSLS 272
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTiygIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRDYGGLA 239


                  ....*.
gi 73915029   273 MSMPLT 278
Cdd:pfam00361 240 KTMPIL 245
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 6-278 5.00e-53

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 181.74  E-value: 5.00e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029    6 ISSLVIFYSNQYMEEDYNINRF-----ILLVLMSVtskklLIISPNLISILLGSDGLGLVSYCLV-IYFQNVKSYNAGML 79
Cdd:MTH00210  92 VSALVHIYSTGYMSGDPHIPRFmsylsLFTFLMIV-----LVTSDNYVQLFIGWEGVGLCSYLLInFWLTRIKANKAAIK 166

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   80 TALSNRIGDVALLLAIAWMLN-YGSWNY--IFYLDMMKNNFE-MMIIGALVMLAAMTKSAQIPFSSWLPAAMAAPTPVSA 155
Cdd:MTH00210 167 AMLINRVGDIGLVLAMIMILKeFGTLEFstISSLLVTNINKEsLTIICLLLFIGAVGKSAQLGLHTWLPDAMEGPTPVSA 246

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  156 LVHSSTLVTAGVYLLIRFNDLLMNWWMSQFLLLVSG-LTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLA 234
Cdd:MTH00210 247 LIHAATMVTAGVFLIIRSGPLFEGSPLALTIVTILGaLTAFFAATVGVVQNDLKKVIAYSTCSQLGYMVMVCGISNYSTS 326

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 73915029  235 FFHLLTHALFKALLFMCAGSIIHNMKNSQDIRMMGSLSMSMPLT 278
Cdd:MTH00210 327 LFHLMNHAFFKALLFLSAGSVIHAVSDEQDMRKMGGLIKSIPFT 370
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
3-278 3.99e-47

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 166.74  E-value: 3.99e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029    3 VLLISSLVIFYSNQYMEEDYNINRFILLVLMSVTSKKLLIISPNLISILLGSDGLGLVSYCLVIYFQNVKSY-NAGMLTA 81
Cdd:PRK07376 100 VTTVALLVMIYSDGYMAHDPGYVRFFAYLSLFSSSMLGLVISPNLVQIYVFWELVGMCSYLLVGFWYDRKGAaDAAQKAF 179

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   82 LSNRIGDVALLLAIA---WMLNYgswnyiFYLDMMKNNFEMMI------------IGALVMLAAMTKSAQIPFSSWLPAA 146
Cdd:PRK07376 180 VVNRVGDFGLLLGILglfWATGS------FDFDGIADRLSELVssgavsgwlallLCILVFLGPMAKSAQFPLHVWLPDA 253

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  147 MAAPTPVSALVHSSTLVTAGVYLLIRFNDLLMNWWMSQFLLLVSG-LTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSI 225
Cdd:PRK07376 254 MEGPTPISALIHAATMVAAGVFLVARMYPVFEQFPAVMTVIAWTGaITAFLGASIALTQNDIKKGLAYSTISQLGYMVMA 333

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 73915029  226 LSMGFYKLAFFHLLTHALFKALLFMCAGSIIHNMKN--------SQDIRMMGSLSMSMPLT 278
Cdd:PRK07376 334 MGCGAYSAGLFHLMTHAYFKAMLFLGSGSVIHGMEEvvghdpvlAQDMRLMGGLRKYMPIT 394
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 6-278 6.69e-43

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 155.12  E-value: 6.69e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029    6 ISSLVIFYSNQYMEEDYNINRFILLVLMSVTSKKLLIISPNLISILLGSDGLGLVSYCLVIYFQN-VKSYNAGMLTALSN 84
Cdd:MTH00032  92 ISTLVHIYSTSYMSDDPHVPRFLCYLSLFTFLMMVLVTSDNYLQLFIGWEGVGVCSYLLVAFWTTrIQANKAAIKAIVVN 171

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   85 RIGDVALLLAIAWM------LNYGSWNYIFYLD-MMKNNFE-----------MMIIGALVMLAAMTKSAQIPFSSWLPAA 146
Cdd:MTH00032 172 RVGDVGVILGMVLIyktigsLDFLTFNGGSVGSgIMDRGYYgggayesplapFAIIGILLLIGCIGKSAQLGLHTWLPDA 251

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  147 MAAPTPVSALVHSSTLVTAGVYLLIRFNDLLMNWWMSQFLLLVSG-LTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSI 225
Cdd:MTH00032 252 MEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIITIFGaLTAFFAATVGLVQNDLKKVIAYSTCSQLGYMVLI 331

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 73915029  226 LSM-GFYKLAFFHLLTHALFKALLFMCAGSIIHNMK-NSQDIRMMGSLSMSMPLT 278
Cdd:MTH00032 332 IGIeGSHNVGLFHLVNHAFFKALLFLSAGSVIHSTTvDEQDMRKMGGLIHSIPFT 386
ND5 MTH00063
NADH dehydrogenase subunit 5; Provisional
 4-274 3.29e-42

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214414 [Multi-domain]  Cd Length: 522  Bit Score: 151.18  E-value: 3.29e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029    4 LLISSLVIFYSNQYMEEDYNINRFILLVLMSVTSKKLLIISPNLISILLGSDGLGLVSYCLVIYFQNVKSYNAGMLTALS 83
Cdd:MTH00063  55 LICFYYSLLYTFHYFGGSYASFLLNKLIVLFVLVMGILVLTGDFLSTLIFWEYLGVVSFFLILFYDNFLSLRASVVTLVS 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   84 NRIGDVALLLAIAWmlnygswNYIFYLDMMknnfemmIIGALVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLV 163
Cdd:MTH00063 135 SRFGDVCLFLLIGL-------SCWGGSGSF-------LCCLFFFLIVFTKSASFPFISWLLEAMRAPTPVSSLVHSSTLV 200

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  164 TAGVYLLIRFNDLLMNWWMSQFLLLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHLLTHAL 243
Cdd:MTH00063 201 AAGVWFVMRYDYLLGFSWLSIFFSVLLLLTIFITGVSSLFFSDLKKIVALSTCNNISWCVLYLIYGDVILSLFQLVSHGV 280

                        250       260       270
                 ....*....|....*....|....*....|.
gi 73915029  244 FKALLFMCAGSIIHNMKNSQDIRMMGSLSMS 274
Cdd:MTH00063 281 SKCLLFMLVGDVMSGSGGSQSSNCVYSSILY 311
ndhF CHL00025
NADH dehydrogenase subunit 5
 9-278 8.47e-41

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 149.66  E-value: 8.47e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029    9 LVIFYSNQYMEEDYNINRFILLVLMSVTSKKLLIISPNLISILLGSDGLGLVSYCLV-IYFQNVKSYNAGMLTALSNRIG 87
Cdd:CHL00025 106 LVLIYSDNYMSHDQGYLRFFAYLSFFNTSMLGLVTSSNLIQIYIFWELVGMCSYLLIgFWFTRPIAANACQKAFVTNRVG 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   88 DVALLLAIA---WMLnyGSWNYIFYLDMMKN-------NFEMMIIGA-LVMLAAMTKSAQIPFSSWLPAAMAAPTPVSAL 156
Cdd:CHL00025 186 DFGLLLGILgfyWIT--GSFEFRDLFEIFNNliynnevNLLFATLCAfLLFLGPVAKSAQFPLHVWLPDAMEGPTPISAL 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  157 VHSSTLVTAGVYLLIR----FNDL--LMNwwmsqFLLLVSGLTMFmagLGANFEF---DLKKIIALSTLSQLGLMMSILS 227
Cdd:CHL00025 264 IHAATMVAAGIFLVARllplFIVIpyIMN-----LISLIGIITAL---LGATLALaqkDIKRGLAYSTMSQLGYMMLALG 335

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 73915029  228 MGFYKLAFFHLLTHALFKALLFMCAGSIIHNM--------KNSQDIRMMGSLSMSMPLT 278
Cdd:CHL00025 336 IGSYRAALFHLITHAYSKALLFLGSGSVIHSMepivgyspDKSQNMVLMGGLRKYMPIT 394
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 2-278 2.33e-39

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 145.45  E-value: 2.33e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029    2 FVLLIS---SLVIFYSNQYMEEDYNINRFILLVLMSVTSKKLLIISPNLISILLGSDGLGLVSYcLVIYF--QNVKSYNA 76
Cdd:PRK12647  69 FALLITgigTLIVLYAGGYLKGHPDLGRFYSYILLFMASMLGLVLSDNLITLFVFWELTSITSF-LLIGFnhEREAARRA 147

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   77 GMLTALSNRIGDVALLLAIAWMLNYGSWNYIFYL----DMMKNNFEMMIIGALVMLAAMTKSAQIPFSSWLPAAMAAPTP 152
Cdd:PRK12647 148 ALQALLVTGGGGLALLAGLILLGNVTGTYSLSELlasgDVIREHPLYLAILLLVLGGAFTKSAQFPFHFWLPNAMEAPTP 227

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  153 VSALVHSSTLVTAGVYLLIRFNDLL--MNWWMSqFLLLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGF 230
Cdd:PRK12647 228 VSAYLHSATMVKAGIYLLARLNPVLggTPLWQT-ILPLFGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGS 306

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 73915029  231 ---YKLAFFHLLTHALFKALLFMCAGSIIHNMkNSQDIRMMGSLSMSMPLT 278
Cdd:PRK12647 307 elaIKAAVLFLVAHSLYKGALFMVAGIIDHET-GTRDITKLGGLRRAMPIT 356
2a6301s01 TIGR00940
Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial ...
 2-278 5.53e-38

Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial multicomponent K+:H+ and Na+:H+ antiporters. The best characterized systems are the PhaABCDEFG system of Rhizobium meliloti which functions in pH adaptation and as a K+ efflux system and the MnhABCDEFG system of Staphylococcus aureus which functions as a Na+:H+ antiporter. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273353 [Multi-domain]  Cd Length: 793  Bit Score: 141.91  E-value: 5.53e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029     2 FVLLIS---SLVIFYSNQYMEEDYNINRFILLVLMSVTSKKLLIISPNLISILLGSDGLGLVSYCLVIY-FQNVKSYNAG 77
Cdd:TIGR00940  80 FSLLITgigVLVVLYSIYYLSKEEPLPNFYAYLLAFMGAMLGVVLSDNLILLYVFWELTSIVSFLLISYwHHRAHSRYGA 159

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029    78 MLTALSNRIGDVALLLAIAWML----NYGSWNYIFYLDMMKNNFEMMIIGALVMLAAMTKSAQIPFSSWLPAAMAAPTPV 153
Cdd:TIGR00940 160 QKSLTITVFGGLAMLGGLILLGkitgSFSIDAVIASADAIRNSPLFGTAMVLVLLGAFTKSAQFPFHIWLPDAMEAPTPV 239

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   154 SALVHSSTLVTAGVYLLIRFNDLLMNWWMSQFLLLVSGL-TMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMG--- 229
Cdd:TIGR00940 240 SAYLHSATMVKAGLYLLARFTPVFAGTEAWFWIVGLAGLiTLLWGSYFAIFQQDLKGILAFSTISQLGLIMVLLGLGsps 319

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 73915029   230 ---------FYKLAF----FHLLTHALFKALLFMCAGSIIHNmKNSQDIRMMGSLSMSMPLT 278
Cdd:TIGR00940 320 yhyqgddskIYALAAvaavFHLINHATFKGSLFMAAGIIDHE-TGTRDIRKLGGLFHIMPIT 380
PRK12650 PRK12650
DUF4040 family protein;
3-278 8.21e-38

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 141.33  E-value: 8.21e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029    3 VLLISSLVIFYSNQYMEEDYNINRFILLVLMSVTSKKLLIISPNLISILLGSDGLGLVSYCLVIyfQNVKSYNAG-MLTA 81
Cdd:PRK12650  88 ALVIGAVVFIYSARYLPRKKGNTSFYLLMTAFMAAMLLLVLADDVVVLFVAWELVSLASFFLIA--RSGSGGEAGsIRTL 165

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   82 LSNRIGDVALLLAIAWMLNY-GSWNY--IFYLDMMKNNFEMM-IIGALVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALV 157
Cdd:PRK12650 166 ILTFFGGLTLLAAVAIAATQtGTTSLsgILHSDVWAEKPGLTtVVAVLIAVAAFTKSAQFPFHFWLPEAMAAITPVSAFL 245

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  158 HSSTLVTAGVYLLIRFNDLLMN--WWmsQFLLLVSGL-TMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGF-YKL 233
Cdd:PRK12650 246 HAAAVVKAGIYLLLRFSPVFHDvaVW--NWLLIIVGMiTALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTpFAL 323

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 73915029  234 --AFFHLLTHALFKALLFMCAGSIIHNmKNSQDIRMMGSLSMSMPLT 278
Cdd:PRK12650 324 taAVVHTLAHALFKSSLFMLIGVVDHQ-AGTRDIRRLGSLWRRMPFT 369
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 3-278 2.32e-36

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 134.12  E-value: 2.32e-36
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   3 VLLISSLVIFYSNQYMEEDYNINRFILLVLMSVTSKKLLIISPNLISILLGSDGLGLVSYCLVIYFQNVKSYNAGMLTAL 82
Cdd:COG0651  85 TALVALAVLLYSIGYMRHERRGRRFYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLI 164

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  83 SNRIGDVALLLAIAWM-LNYGSWNY--IFYLDMMKNNFEMMIIGALVMLAAMTKSAQIPFSSWLPAAMA-APTPVSALVh 158
Cdd:COG0651 165 LNLVGSALFLLGVGLLyGATGTLNMadLAARLAELDPGLLLAAFALLLVGFGIKAALFPLHFWLPDAYPaAPSPVSALL- 243

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029 159 SSTLVTAGVYLLIRFNDLL----MNWWMSQFLLLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKL- 233
Cdd:COG0651 244 SGLLTKVGVYAILRVLTLLfgadPALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGl 323

                       250       260       270       280
                ....*....|....*....|....*....|....*....|....*..
gi 73915029 234 --AFFHLLTHALFKALLFMCAGSIIHnMKNSQDIRMMGSLSMSMPLT 278
Cdd:COG0651 324 agALFHLLNHALAKALLFLAAGAIER-ATGTRDLDKLGGLGKRMPLT 369
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
 125-278 3.26e-34

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 131.08  E-value: 3.26e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  125 LVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNDLL--MNWWmsqfLLLVSG---LTMFMAGL 199
Cdd:PRK12648 212 LILLGAFTKSAQFPFHFWLPHAMAAPTPVSAYLHSATMVKAGVFLLARLWPVLagTEEW----FWIVGGaglITLLLGAY 287

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  200 GANFEFDLKKIIALSTLSQLGLMMSILSMGfYKLA----FFHLLTHALFKALLFMCAGsIIHNMKNSQDIRMMGSLSMSM 275
Cdd:PRK12648 288 FALFQHDLKGLLAYSTISHLGLITLLLGLG-SPLAavaaIFHIINHATFKASLFMAAG-IIDHETGTRDMRRLSGLRRLM 365


                 ...
gi 73915029  276 PLT 278
Cdd:PRK12648 366 PIT 368
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
 125-278 2.08e-33

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 128.50  E-value: 2.08e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  125 LVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNDLLMNwwMSQFLLLVSG---LTMFMAGLGA 201
Cdd:PRK12645 215 LILLGAFTKSAQFPFYIWLPDAMEAPTPVSAYLHSATMVKAGIYLVARFTPIFAG--SQVWFWTVTLvglITLFWGSLNA 292

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  202 NFEFDLKKIIALSTLSQLGLMMSILSMG------------FYKLAF----FHLLTHALFKALLFMCAGSIIHNMkNSQDI 265
Cdd:PRK12645 293 VKQTDLKGILAFSTVSQLGLIMSLLGIGaaslhyqgddskIYAAAItaaiFHLINHATFKGSLFMIVGIVDHET-GTRDI 371

                        170
                 ....*....|...
gi 73915029  266 RMMGSLSMSMPLT 278
Cdd:PRK12645 372 RKLGGLMTIMPIT 384
PRK12646 PRK12646
DUF4040 family protein;
5-278 3.20e-32

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 125.25  E-value: 3.20e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029    5 LISSLVIFYSNQYMEEDY-NINRFILLVLMSVTSKKLLIISPNLISILLGSDGLGLVSYCLVIY-FQNVKSYNAGMLTAL 82
Cdd:PRK12646  89 LIGIAVFFYATQYLSSRKdNLPRFYFYLTLFMFSMIGIVLSDNTILMYVFWELTSVSSFLLISYwYNNGDSQFGAIQSFM 168

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   83 SNRIGDVALLLAIAWMLNYGSWNYIFYL----DMMKNNFEMMIIGALVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVH 158
Cdd:PRK12646 169 ITVFGGLALLVGFIMLYIMTGTNNITEIlgqaDHIKNHGLFIPMIFMFLLGAFTKSAQFPFHIWLPRAMAAPTPVSAYLH 248

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  159 SSTLVTAGVYLLIRFNDLL-MNWWMSQFLLLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMG-------- 229
Cdd:PRK12646 249 SATMVKAGIFLLFRFTPLLgLSNMYIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAMVGIGggyaqhqq 328

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 73915029  230 -----FYKL----AFFHLLTHALFKALLFMCAGsIIHNMKNSQDIRMMGSLSMSMPLT 278
Cdd:PRK12646 329 daiasIYVFvlfaALFHLMNHAIFKCALFMGVG-IIDHEAGTRDIRILSGMRQLFPKM 385
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 124-278 9.39e-32

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 123.88  E-value: 9.39e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  124 ALVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIR----FNDLLMnWwmsQFLLLVSGL-TMFMAG 198
Cdd:PRK12644 207 VLILVGALSKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVARlapgFADVPV-W---RPTVLVLGLaTMLLGG 282

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  199 LGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAFFHL---LTHALFKALLFMCAGSIIHNmKNSQDIRMMGSLSMSM 275
Cdd:PRK12644 283 WRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLamlLAHALFKAALFLVVGIIDHS-TGTRDIRKLSGLGRRQ 361


                 ...
gi 73915029  276 PLT 278
Cdd:PRK12644 362 PVL 364
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 3-278 6.21e-30

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 117.38  E-value: 6.21e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029    3 VLLISSLVIFYSNQYMEE-------DYNINRFILLVLMSVTSKKLLIISPNLISILLGSDGLGLVSYCLVIYFQNVKSYN 75
Cdd:PRK06525  84 VVLLGLLVTLYSTGYMSPgnrehpvHEGTGRYYAFLLLFIGAMAGLVYSSTLLGLLLFFEITGLCSWALISYYQSPKALR 163

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   76 AGMLTALSNRIGDVALLLAIAWMLNYGSWNYIFYLDMMKNNFEMMIIGALvMLAAMTKSAQIPFSSWLPAAMAAPTPVSA 155
Cdd:PRK06525 164 SALKALLITHIGSLGLYLAAATLFLQTGTFALSALSGLHGSLKYLVFLGI-LFAAWGKSAQLPFYSWLPDAMEAPTPASA 242

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  156 LVHSSTLVTAGVYLLIRFNdLLMNW---WMSQFLLLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFY- 231
Cdd:PRK06525 243 YLHAASMVKVGVYIFARAI-QSMGPiphVIGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSLAILg 321

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 73915029  232 -----KLAFFHLLTHALFKALLFMCAGSIIHNMkNSQDIRMMGSLSMSMPLT 278
Cdd:PRK06525 322 srlalEGSIAYIFNHAFAKSLFFLVAGALSYSC-GTRLLPRLRGVLKKLPLV 372
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 6-278 7.80e-29

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 115.31  E-value: 7.80e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029    6 ISSLVIFYSNQYMEEDYNINRFILLVLMSVTSKKLLIISPNLISILLGSDGLGLVSYCLVIYFQNVKSYNAGMLTALSNR 85
Cdd:PRK12649  92 IGVIIMSYSNGYMSHKEDLPRYYQYLLLFMGSMIGMVFSGNTIQLFIFWELTSITSFMLIGYWRHRPESVYGATKSLLIT 171

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   86 IGDVALLLAIAWMLNYGSWNYIF--------YLDMMKNNFEMMIIGALVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALV 157
Cdd:PRK12649 172 AGGGLFMFAGFLLLHVITGTYDIatilqdseLIENIKGHPLFLITLILIFIGAAAKSAQGPFYIWLPNAMEAPTPVSAFL 251

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  158 HSSTLVTAGVYLLIRFNDLLMNwwMSQFLLLVSG---LTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYK-- 232
Cdd:PRK12649 252 HSATMVKAGVYLVARIHPIFSG--TEAWFILVSGtgmITMVLAGFLAFRQTDIKAILAYSTISQLAYLMTMYGYTTYHep 329

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 73915029  233 -----LAFFHLLTHALFKALLFMCAGSIIHNMKnSQDIRMMGSLSMSMPLT 278
Cdd:PRK12649 330 glgvaAATFHLLNHATFKACLFLVAGIVAHEAA-TRDIRKLGGLRKEMPIT 379
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
3-256 6.58e-26

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 106.32  E-value: 6.58e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029    3 VLLISSLVIFYSNQYMEEDYNINRFILLVLMSVTSKKLLIISPNLISILLGSDGLGLVSYCLVIYFQNVKsynAGMLTA- 81
Cdd:PRK08168  78 VQLLGWVIGRFSHRYLQGEPGQRRYVRALAGVLAAVHLLVLSDHLLVLIAAWAAISLALHRLLCFYPDRP---FARLAAh 154

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   82 ---LSNRIGDVALLLAIA-WMLNYGSWNY---IFYLDMMKNNFEMMIIGALVMLAAMTKSAQIPFSSWLPAAMAAPTPVS 154
Cdd:PRK08168 155 kkfIADRLAELLLLAAAAlAYLEVGSLSLsalWAHLAAQGASPSLQAAALLLVLAVILKTAQLPVHGWLIQVMEAPTPVS 234

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  155 ALVHSStLVTAGVYLLIRFNDLLMNWWMSQFLLL-VSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKL 233
Cdd:PRK08168 235 ALLHAG-VVNLGGFVLIRFAPLLEQAPPARWLLVlVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFMLLECGLGLYEL 313

                        250       260
                 ....*....|....*....|...
gi 73915029  234 AFFHLLTHALFKALLFMCAGSII 256
Cdd:PRK08168 314 ALLHLVAHSLYKAHAFLSASEAV 336
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 121-278 1.43e-22

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 96.49  E-value: 1.43e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  121 IIGALVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIR----------FNDLLMNWwmsqFLLLVS 190
Cdd:PRK08375 203 TAFGFVLLALALKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRiyftvfggdfRFALGLGW----LLAVLA 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  191 GLTMFMAGLGANFEFDLKKIIALSTLSQLG---LMMSILSMGFYKLAFFHLLTHALFKALLFMCAGSIIHNMkNSQDIRM 267
Cdd:PRK08375 279 LLSMLVGSLAALGQDDVKRVLAYSTVSQMGyilLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTY-GTRRLSE 357

                        170
                 ....*....|.
gi 73915029  268 MGSLSMSMPLT 278
Cdd:PRK08375 358 LSGLGRRMPLT 368
PRK08601 PRK08601
NADH dehydrogenase subunit 5; Validated
 75-256 2.34e-21

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 236310 [Multi-domain]  Cd Length: 509  Bit Score: 93.18  E-value: 2.34e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   75 NAGMLTALSNRIGDVALLLAIAWM-LNYGSWNYIFYLD----MMKNNFEMMIIGALVMLAAMTKSAQIPFSSWLPAAMAA 149
Cdd:PRK08601 154 EAAKISGMLFLISWLALALAIVWLfIATGEWQLTSVLSnenlAQLGTWEKTGINLLLILAVMIPAAQWPFQRWLIESAVA 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  150 PTPVSALVHSStLVTAGVYLLIRFNDLLMNWWMSQFLLLVSGLTMFMaGLGANF-EFDLKKIIALSTLSQLGLMMSILSM 228
Cdd:PRK08601 234 PTPVSAIMHAG-LVNAGGIMLTRFSPLFHDDIAQILLLIFASISVLI-GTGISLvQVDYKRQLVGSTMAQMGFMLVQCAL 311

                        170       180
                 ....*....|....*....|....*...
gi 73915029  229 GFYKLAFFHLLTHALFKALLFMCAGSII 256
Cdd:PRK08601 312 GAYSAAIIHLILHGLFKATLFLQSGSAV 339
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
 82-278 9.64e-21

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 91.51  E-value: 9.64e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   82 LSNRIGDVALLLAIAWMLNY-GSWNYIFYLDMMKNNFEMMIIGALVMLA----AMTKSAQIPFSSWLPAAMAAPTPVSAL 156
Cdd:PRK07390 178 LTKRVGDLLLLMGVVALSPLaGTLNFSDLAAWAATANLDPLTATLLGLAliagPTGKCAQFPLHLWLDEAMEGPNPASIL 257

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  157 vHSSTLVTAGVYLLIRFNDLL-MNWWMSQFLLLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLAF 235
Cdd:PRK07390 258 -RNSVVVATGAWVLIKLQPVLaLSPVALTVLIVIGTVTAIGASLVAIAQIDIKRALSYSTSAYLGLVFIAVGLQQPDIAL 336

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 73915029  236 FHLLTHALFKALLFMCAGSIIHNmKNSQDIRMMGSLSMSMPLT 278
Cdd:PRK07390 337 LLLLTHAIAKALLFMSVGSIILT-TITQDLTELGGLWSRMPAT 378
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-278 2.16e-19

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 87.56  E-value: 2.16e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029    2 FVLLISSL---VIFYSNQYMEEDY--NINRFILLVLMSVTSKKLLIISPNLISILLGSDGLGLVSYCLVIYFQNVKSYNA 76
Cdd:PRK06589  88 FLLLIGFLwicALLYTPKYLAINNidSSSRFLFFFNLTILIGVLIALSSDLFTMFVCYELLTISTAFLIGHTRNNISLSG 167

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   77 GmLTALSNRIGDVALLLAIAWMLNYGSWNYIFYLDMMKNNFEMMIIGALVMLAAMTKSAQIPFSSWLPAAMAAPTPVSAL 156
Cdd:PRK06589 168 G-YKYLKILMISALLLFLPAVILIYTKTGNLDFVSGGLFSKNQSIILLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVSAL 246

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  157 VHSSTLVTAGVYLLIRFndLLMNW---------WMSQFLLLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMM---S 224
Cdd:PRK06589 247 LHAVIVVKTGLFCIYKI--LLYIFglsylqrifAEFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALlsaF 324

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 73915029  225 ILSMGFYKLAFFHLLTHALFKALLFMCAGSIIhNMKNSQDIRMMGSLSMSMPLT 278
Cdd:PRK06589 325 ILTPKALGAAILHLVSHSFAKICLFYSMGSIY-SLKKEDQVDKLHGTSKSFPLI 377
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 40-278 1.09e-18

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 85.71  E-value: 1.09e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   40 LLIISPNLISILLGSDGLGLVSYCLVIYFQNVKS-YNAGMLTALSNRIGDVALLLAIaWMLNYGSWNYIFylDMMKNNFE 118
Cdd:PRK06521 128 LVLLADDAFSFLVAWETMSLSSWFLVIANHREAEiRRAGFLYLLMAHAGALAILLAF-GLLARESGSYDF--AAMRAAHL 204

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  119 MMIIGALVMLAAM----TKSAQIPFSSWLPAAM-AAPTPVSALVhSSTLVTAGVYLLIRFN-DLLMN--WWMSQFLLLVS 190
Cdd:PRK06521 205 SPFWASLVFLLALfgfgAKAGLVPLHVWLPRAHpAAPSHVSALM-SGVMLKVAIYGILRVVfDLLGApgWWWGVLVLALG 283

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  191 GLTMFMAGLGANFEFDLKKIIALSTLSQLGLM-MSI-LSMGFYKL------------AFFHLLTHALFKALLFMCAGSII 256
Cdd:PRK06521 284 AISAVLGVLYALAEHDLKRLLAYSTIENIGIIfVGLgLAMVFIAYgmpllaalaltaALYHLLNHALFKSLLFLGAGAVL 363

                        250       260
                 ....*....|....*....|..
gi 73915029  257 HNMkNSQDIRMMGSLSMSMPLT 278
Cdd:PRK06521 364 HAT-GTRDMEKLGGLIRRMPWT 384
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 43-278 1.19e-17

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 82.31  E-value: 1.19e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   43 ISPNLISILLGSDGLGLVSYCLVIYFQNVKSYNAGM-LTALSNrIGDVALLLAIAwmLNYGSWNYIFYLDMMKNNFEMMi 121
Cdd:PRK07234 112 VCADLISLYVALEVLSIATFLLVAYPRTDRAIWVGLrYLFYSN-VAMLFYLIGAV--LVYQANGTFAFSGLATADPEAF- 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  122 igALVMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNDLLMNWWmsQFLLLVSGLTMFMAGLGA 201
Cdd:PRK07234 188 --ALIALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLD--LIVRIFGVGTALLGVLFA 263

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 73915029  202 NFEFDLKKIIALSTLSQLG-LMMSILSMGFYKLAffhlltHALFKALLFMCAGsIIHNMKNSQDIRMMGSLSMSMPLT 278
Cdd:PRK07234 264 LLEKDLKRMLAFSTISQLGfILAAPLVGGLYALA------HGLVKSTLFLCAG-ALPSRNFTELISQMLGIGKWIPLT 334
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 2-278 3.49e-17

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 80.93  E-value: 3.49e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029    2 FVLLISSL---VIFYSNQYMEE-DYNINRFILLVLMS--VTSKKLLIISPNLISILLGSDGLGLVSYCLVIY-FQNVKSY 74
Cdd:PRK08667  82 FIILIGLVslcVAIYSLGYNEHmSSNERANLLSALTAlfILSMLGVVASANTFSFLFFWEIMALSSFFLVMNdYQEEETQ 161

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   75 NAGMLTALSNRIGDVALLLAIAWM-LNYGSWNYIFyldMMKNNFEMMIIGALVMLAAMTKSAQIPFSSWLPAAM-AAPTP 152
Cdd:PRK08667 162 RAGIFYFVMTQLSTVFLMLGIIVLfIQTGSFELSP---LGASAGILSLVFLLLFLGFGIKAGIIPFHKWLPYAHpASPSN 238

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  153 VSALVhSSTLVTAGVYLLIRF--NDLLMNWWMSQFLLLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMsiLSMGF 230
Cdd:PRK08667 239 VSALM-SGVMLKVAVYGLVRFlmDVLSPELWWGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIIL--MGIGL 315

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 73915029  231 YKL----------------AFFHLLTHALFKALLFMCAGSIIHNMkNSQDIRMMGSLSMSMPLT 278
Cdd:PRK08667 316 YVIfgvygldtlallalggALFHSLNHALFKSLLFLTAGSVVHAT-GTRNIEKMGGLVKLMPYT 378
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 5-278 1.71e-16

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 78.86  E-value: 1.71e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029    5 LISSLVIFYSNQYME-EDYNINRFILLVLMSVtskklliispNLISILLGSDG---------LGLVSYCLVIYFQNVK-S 73
Cdd:PRK12667  93 LVMFLILIYSYWYLEhESGPEWYYTLLLGLEA----------GMLGILLTGDAfnlfvmlevLSISAYGLVAYYRDRGdA 162

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   74 YNAGMLTALSNRIGDVALLLAIAWMLN-YGSWN--------YIFYLDMMKNNFE-----MMIIGALVMLAAMTKSAQIPF 139
Cdd:PRK12667 163 VEAAIKYALIGAVGTTLYFLALAFLYAtFGTLNmadlsakiRGLSFPLTGGLAGnpplaLGVALALALWAFTIKAAIFPN 242

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  140 SSWLPAAM-AAPTPVSALVhSSTLVTAGVYLLIRF------NDLLMNW---WMSQFLLLVSGLTMFMAGLGANFEFDLKK 209
Cdd:PRK12667 243 HFWLPDAHpAAPSPVSAML-SGLVVNVGAYAIIRFlytifgISPSLIDfraALSPILIILGAVSAIIGALMMVVQKDVKR 321

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 73915029  210 IIALSTLSQLGLMMSILSMGF---YKLAFFHLLTHALFKALLFMCAGSIIHNMKnSQDIRMMGSLSMSMPLT 278
Cdd:PRK12667 322 LLAYSTISHMGYIFMGIGIGTqlgLAAALFHIINHAIAKSLLFLASGVFIHAAG-TRDIDELAGLGRKMPIA 392
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 3-278 3.31e-14

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 72.05  E-value: 3.31e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029    3 VLLISSLVIFYSNQYMEEDYNINRFILLVLMSVTSKKLLIISPNLISILLGSDGLGLVSYCLVIYFQNV-KSYNAGMLTA 81
Cdd:PRK08376  99 ATIVSFLAVLYSISYMKHDTGLDKYYTLILLLELGMLGMAITGDLFNFFVFLEIMSIASYALVAFRNDTwEAIEAGIKYM 178

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   82 LSNRIGDVALLLAIAWML-NYGSWNYIFYLDMMKNNFEMMIIGALVMLAA--MTKSAQIPFSSWLPAAM-AAPTPVSALV 157
Cdd:PRK08376 179 FVGSLASSMVLLGIALLYgQYGTLNMAYLAVKMSENPTVVAKIALALFIAglAMKSGAVPVHMWLPDAYpAAPSSISAML 258

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  158 HSSTLvtAGVYLLIR---------FNDLLMNWwmsqFLLLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSM 228
Cdd:PRK08376 259 LVIKQ--AGLYALARvlfsiygpaINLATVGW----VIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLGV 332

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 73915029  229 GFYKL---------------AFFHLLTHALFKALLFMCAGSIIHNMkNSQDIRMMGSLSMSMPLT 278
Cdd:PRK08376 333 GLAALgdpamasygeialagGIYHIVNHALYKALLFLTAGAVIYET-GTRNLNELGGLARTMPKT 396
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-278 8.00e-14

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 71.18  E-value: 8.00e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029    2 FVLLISSLVIFYSNQYMEEDYNINR--FILLVLMSVTSKKLLIISPNLISILLGSDGLGLVSYcLVIYFQNVKSYNAGML 79
Cdd:PRK08668  73 FFAMISLLVIFSVAFFMVSEKTKNDayFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSF-MMVPMGKKESRKASLK 151

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   80 TALSNRIGDVALLLAIAWMLN-YGSWNYIFYLDMMKNNFE---MMIIGALVMLAAMTKSAQIPFSSWLPAAMA-APTPVS 154
Cdd:PRK08668 152 YFVLSAIGAYAMLYAIFLIYAkTGTFDFADISQGLINDTStgfALIVFLFLLAFGVAKAGIFPLHVWAPDAYSeAPQSFS 231

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  155 AlVHSSTLVTAGVYLLIRFNDLLMN----WWMSQF---------LLLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGL 221
Cdd:PRK08668 232 A-VLSGQLSKLGAYGFLLVLYVLPGtklfSEFGTYrgvplfnyiLAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGY 310

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  222 MMSILSMGF---YKLAFFHLLTHALFKALLFMCAGSIIHNMKNSQdIRMMGSLSMSMPLT 278
Cdd:PRK08668 311 ILVGLGLGTslgFAGGLFHVFNHALFKGLFFLIFAAVIYRTGTTK-ISEMGGLIEKMPFT 369
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 86-278 4.75e-13

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 68.57  E-value: 4.75e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  86 IGDVALLLAIAWMLNYGSWNYIFYLDMMKNNFEM---MIIGALVMLAAMTKSAQIPFSSWLP-AAMAAPTPVSALvHSST 161
Cdd:COG1008 172 AGSLLMLVAILALYFLAGALTFDIAELAAAPLPLtaqLLLFLAFFIAFAVKVPMFPFHTWLPdAHVEAPTAGSVL-LAGV 250

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029 162 LVTAGVYLLIRFNDLLMN---WWMSQFLLLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMsilsMGFYKL----- 233
Cdd:COG1008 251 LLKMGGYGLLRFALPLFPeasAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVL----LGIFALnplgl 326

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*..
gi 73915029 234 --AFFHLLTHALFKALLFMCAGSIIHNMKnSQDIRMMGSLSMSMPLT 278
Cdd:COG1008 327 qgAVLQMVSHGLITAALFLLVGVLYDRTH-TRDIADLGGLAKRMPVL 372
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 2-278 5.25e-13

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 68.64  E-value: 5.25e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029    2 FVLLISSLVIFYSNQYMEEDYNINRFILLVLMSVTSKKLLIISPNLISILLGSDGLGLVSYCLVIYFQNVKSYNAGMLTA 81
Cdd:PRK08377  85 LIIAIVSFIMSIFSLKAVEVEPIDKYAMLFLLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKTGEAAEASMKYI 164

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   82 LSNRIGDVALLLAIAwmLNYGSWNYIFYLDMMKNNFEMM----IIG-ALVMLAAMTKSAQIPFSSWLPAA-MAAPTPVSA 155
Cdd:PRK08377 165 VLGGIGSSFFLIGVA--LIYGATGTLNMAHIAQLAGTIDptvaQVGlALLIFGLAVEAELFPLNAWAPDAyQAAPHPITV 242

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  156 LVhSSTLVTAGVYLLIRFNDLL--MNWWMS--QFLLLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGF- 230
Cdd:PRK08377 243 MF-SAFVVKAGLYAMARILYLMqnANGWSSvlKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTq 321

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 73915029  231 --YKLAFFHLLTHALFKALLFMCAGSIIHNMKnSQDIRMMGSLSMSMPLT 278
Cdd:PRK08377 322 agVDAGVFHMINHAIVKALLFLAVGYVGITLG-GTEIEKFEGLGKRMPLT 370
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
73-278 1.87e-12

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 66.84  E-value: 1.87e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   73 SYNAGMLTALSNRIGDVALLLAIAWMLNY-GSWNYIFYLDmmknnfEMMIIGALVMLAAMTKSAQIPFSSWLPAAMAAPT 151
Cdd:PRK12668 141 AVRAGFRYLLVHVLGGVLLLAGILLHYAEtGSFAFGAIAG------LGGTAAWLILIGFGVNAAFPPLHAWLPDAYPEAT 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  152 PVSALVHSSTLVTAGVYLLIRF---NDLLMnwWMsqflllvsGLTMFMAGLG-ANFEFDLKKIIALSTLSQLGLMMSILS 227
Cdd:PRK12668 215 VTGSVFLSAFTTKTAVYALARAfpgTELLI--YI--------GAAMAVYGVFfALLENDLRRLLSYHIVSQVGYMVAGIG 284

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 73915029  228 MGfYKL----AFFHLLTHALFKALLFMCAGSIIHnMKNSQDIRMMGSLSMSMPLT 278
Cdd:PRK12668 285 IG-TALaingAVAHAFNHILYKGLLFMSAGAVLY-RTGTEKLTELGGLYRSMPLT 337
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 91-277 6.90e-11

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 62.15  E-value: 6.90e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   91 LLLAIA-WMLnygsWNYIFYLDMMKNNFEM--MIIGALVMLAAMTK----SAQIPFSSWLPAAMA-APTPVSALVhSSTL 162
Cdd:PRK08042 148 LLLAIAcWLL----WQRYGTLDLRLLDMRMqqLPLGSDIWLLGVIGfgllAGIIPLHGWVPQAHAnASAPAAALF-STVV 222

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  163 VTAGVYLLIRFNdlLMN-----WWmSQFLLLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGFYKLA--- 234
Cdd:PRK08042 223 MKIGLLGILTLS--LLGgnaplWW-GVALLVLGMITAFVGGLYALMEHNIQRLLAYHTLENIGIILLGLGAGVTGIAleq 299

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 73915029  235 -----------FFHLLTHALFKALLFMCAGSIIHNMKNsQDIRMMGSLSMSMPL 277
Cdd:PRK08042 300 palialglvggLYHLLNHSLFKSVLFLGAGSVWFRTGH-RDIEKLGGIGKKMPV 352
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
110-277 1.69e-10

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 61.12  E-value: 1.69e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  110 LDMMKNNFEMMIIGALVMLAAMTKSAQIPFSsWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNDLLMNW---WMSQFL 186
Cdd:PRK12663 197 LNDMGDTATLTTIALLFLLAFGMKAALFPFM-WLPAAYHTPNTEVAALFAALLTKVGIYALIRVFTLLFPQereLLHPLL 275

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  187 LLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMM---SILSMGFYKLAFFHLLTHALFKALLFMCAGSIIHnMKNSQ 263
Cdd:PRK12663 276 ATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILlglALGTPAGINGAIFYLVHDMVVKTALFLIAGSLVR-LTGYR 354

                        170
                 ....*....|....
gi 73915029  264 DIRMMGSLSMSMPL 277
Cdd:PRK12663 355 SLQYLGGLYRKEPL 368
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 120-277 1.02e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 58.83  E-value: 1.02e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  120 MIIGALVMLAAMTKSAQIPFSSWLPAAM-AAPTPVSAlVHSSTLVTAGVYLLIRFNDLLM-NWWMSQFLLLVSGLTMFMA 197
Cdd:PRK12665 209 TALFAVLLVAFGIKAAVFPLSFWLPDSYpTAPAPVTA-VFAGLLTKVGVYAIIRTHTLLFpGGGLDTLLMVVALLTMVVG 287

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  198 GLGANFEFDLKKIIALSTLSQLGLMMSILSMGF---YKLAFFHLLTHALFKALLFMCAGsIIHNMKNSQDIRMMGSLSMS 274
Cdd:PRK12665 288 ILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTvagLSGAIYYVAHHITVQTTLFLVVG-LIERQAGSSSLRRLGGLAKA 366


                 ...
gi 73915029  275 MPL 277
Cdd:PRK12665 367 SPL 369
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 119-276 5.03e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 56.50  E-value: 5.03e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  119 MMIIGALVMLAAMTKSAQIPFSSWLPAA-MAAPTPVSALVhSSTLVTAGVYLLIRFNDLLMNWWMS---QFLLLVSGLTM 194
Cdd:PRK07691 208 ITVVAILFLFVFATKAGLFPLYFWLPGSyYAPPIAIAALF-GALLTKVGVYAIARTFTLFFSHDTSfthYLILILALLTI 286

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  195 FMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGF---YKLAFFHLLTHALFKALLFMCAGSIIHNMKNSqDIRMMGSL 271
Cdd:PRK07691 287 IFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVAMMTesgMIGAIYYLIHDMIVKAALFLLIGIMIKITGTT-DLKKMGGL 365


                 ....*
gi 73915029  272 SMSMP 276
Cdd:PRK07691 366 IKRYP 370
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 76-277 3.38e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 54.18  E-value: 3.38e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029    76 AGMLTALSNRIGDVALLLAIAWM--LNYGSWNYIFYLDMMKNNFEMMIIGALVMLAAMTKSAQIPFSSWLPAAMA-APTP 152
Cdd:TIGR01972 157 AAMKFFLYTLAGSLLMLLAILGLyfLGGGTFDLLELLNLPLPFGVQTWLFLAFFIAFAVKVPLFPLHTWLPDAHVeAPTA 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   153 VSALVhSSTLVTAGVYLLIRFNDLLM---NWWMSQFLLLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGL-MMSILSM 228
Cdd:TIGR01972 237 GSVIL-AGVLLKMGTYGFLRFNLPLFpdaSLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFvLLGIFSF 315

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 73915029   229 GFYKL--AFFHLLTHALFKALLFMCAGsIIHNMKNSQDIRMMGSLSMSMPL 277
Cdd:TIGR01972 316 NELGIsgAVFQMISHGLITAALFLLVG-VLYERAHTRDIAKYGGLANKMPV 365
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 132-278 3.40e-08

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 54.17  E-value: 3.40e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  132 TKSAQIPFSSWLPAAMA-APTPVSALVhSSTLVTAGVYLLIRFNDLLMNWWMSQF---LLLVSGL-TMFMAGLGANFEFD 206
Cdd:PRK06458 226 TKVGLFPMHAWLPDAHSeAPSPVSALL-SGVLLNVALYAVLRYYILIDAAIGSDFpgrLLLIFGLlSVLVAAFFLLRQRD 304

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 73915029  207 LKKIIALSTLSQLGLMMSILSMGfYKLAFF----HLLTHALFKALLFMCAGSIIHNmKNSQDIRMMGSLSMSMPLT 278
Cdd:PRK06458 305 IKRLFAYSSIEHMGLIAFALGIG-GPLGIFaallHMLNHSLTKSAIFFASGNVLQK-YGTRDINVIRGLLKVSPLT 378
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 2-277 5.47e-08

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 53.20  E-value: 5.47e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   2 FVLLISSLVIFYSNQYMEeDYNINR--FILLVLMSVTSKKLLIISPNLISILLGSDGLGLVSYCLV-IYFQNVKSYNAGM 78
Cdd:COG1007  78 LILLAALLVLLLSRDYLE-RRGLLRgeFYALLLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVaFRRDDRRSSEAAL 156

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  79 ----LTALSNRIgdvaLLLAIAWMLNY-GSWNY---IFYLDMMKNNFEMMIIGALVMLAAMT-KSAQIPFSSWLP-AAMA 148
Cdd:COG1007 157 kyflLGALSSGF----LLYGISLLYGAtGSLNLagiAAALAAGGANSPLLLLGLVLVLAGLAfKLSAVPFHMWTPdVYEG 232

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029 149 APTPVSALVhsSTLV-TAGVYLLIRFNDLLM---NWWMSQFLLLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMS 224
Cdd:COG1007 233 APTPVTAFL--ATAPkIAAFAALLRLLVEAFpglAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLL 310

                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 73915029 225 ILSMGF---YKLAFFHLLTHALFKALLFMCAGSIIHNMKNSQDIRMMGSLSMSMPL 277
Cdd:COG1007 311 GLAAGTplgVSAALFYLLAYLFMNLGAFAVILLLSRKGGEAEEIEDLAGLARRSPL 366
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 119-257 5.74e-08

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 53.22  E-value: 5.74e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  119 MMIIGALVMLAAM-TKSAQIPFSSWLPAAMA-APTPVSALVhSSTLVTAGVYLLIRFNDLL-MNWWMSQFLLLVSGLTMF 195
Cdd:PRK08676 204 VLGASFLFIFIGFlAKSGLVPFHTWLPAAYAkAPSVVSALL-SGTVLNIGIYGILRLSALLrQSGAAEQFSNVLIGLGIF 282

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 73915029  196 MAGLGANFEF---DLKKIIALSTLSQLGLMMSILSMGFYKLAF---FHLLTHALFKALLFMCAGsIIH 257
Cdd:PRK08676 283 SIAVAAFSMLsqrNLKKLIAFSSIEHMGLMLLGIGIGTPLALFwmlFHMLAHSLVKSGLFFSAG-ILH 349
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 82-276 6.76e-06

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 47.12  E-value: 6.76e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   82 LSNRIGDVALLLAIAWMLNY-----GSWNYIFYLDM-MKNNFEMMIIGALvMLAAMTKSAQIPFSSWLPAAMA-APTPVS 154
Cdd:PRK05846 168 LYTLLGSLLMLVAIIYLVVVyynatGTFDIADLLNLpLPPGVQYWLFLAF-FIAFAVKMPMFPLHTWLPDAHVqAPTAGS 246

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  155 ALvHSSTLVTAGVYLLIRFNDLLMNWWMSQFLLLVSGLTMFM---AGLGANFEFDLKKIIALSTLSQLGLMMsilsMGFY 231
Cdd:PRK05846 247 VL-LAGILLKMGAYGLLRFSLPLFPDASHEFAPIIITLGVIAiiyGALVALAQTDIKKLIAYSSISHMGFVT----LGIF 321

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 73915029  232 KL-------AFFHLLTHALFKALLFMCAGSIIHNMKnSQDIRMMGSLSMSMP 276
Cdd:PRK05846 322 AGnqlgiqgAIFQMISHGLSSAALFLLVGVLYDRLH-TRDIADYGGLAKVMP 372
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 126-276 8.80e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 46.65  E-value: 8.80e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  126 VMLAAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRF-------NDLLMNWWMSQFLLLVSGLTMFMAG 198
Cdd:PRK12662 215 IMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIvydvfkaNFVFTTLPFNNVFMILAALAIVFGS 294

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  199 LGANFEFDLKKIIALSTLSQLGLMMSILSMGFYK---LAFFHLLTHALFKALLFMCAGSIIHNMkNSQDIRMMGSLSMSM 275
Cdd:PRK12662 295 VLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYglaAAVAYIVNHSIVKSALFMVSGSISYHF-GTTKLEDCLNLWKSM 373


                 .
gi 73915029  276 P 276
Cdd:PRK12662 374 P 374
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 86-277 3.92e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 41.58  E-value: 3.92e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   86 IGDVALLLAIAWMLNY-GSWNYIFYLDMMKNNFEMMIIGALVMLAAMTKSAQIPFSSWLPAA-MAAPTPVSALVhSSTLV 163
Cdd:MTH00217 171 IGSVFMLLGIFTLYSYaGTTDYQALCCLKIEKELQYFIFLGFFLSLAIKIPKIPFHIWLPQAhVEAPVAGSVIL-AGVLL 249

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  164 TAGVYLLIRFNDLLM---NWWMSQFLLLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLM-MSILSMGFYKL--AFFH 237
Cdd:MTH00217 250 KLGGYGFIRFSWPLLpeaSEYFSPLIQTLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVtLGIFSHTIQGLvaAIFL 329

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 73915029  238 LLTHALFKALLFMcAGSIIHNMKNSQDIRMMGSLSMSMPL 277
Cdd:MTH00217 330 MLAHGLVSSALFI-AVTFLYERHHTRLIKYYRGMVITMPL 368
ndhB CHL00049
NADH dehydrogenase subunit 2
 1-250 4.51e-04

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 41.14  E-value: 4.51e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029    1 SFVLLISSLVIFYSNQYME-EDYNINRFILLVLMSVTSKKLLIISPNLISILLGSDGLGLVSYCLVIYF-QNVKSYNAGM 78
Cdd:CHL00049  86 FLILLCSTLCIPLSVEYIEcTEMAITEFLLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTkKDVRSNEATM 165

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   79 LTALSNRIGDVALLLAIAWMlnYGSWNYIFYLD---------MMKNNFEMMIIGALVMLAAMTKSAQIPFSSWLPAAM-A 148
Cdd:CHL00049 166 KYLLMGGASSSILVYGFSWL--YGLSGGEIELQeivnglintQMYNSPGISIALIFITVGIGFKLSLAPFHQWTPDVYeG 243

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  149 APTPVSALVhSSTLVTAGVYLLIRFNDLLM----NWWMSqFLLLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMS 224
Cdd:CHL00049 244 SPTPVVAFL-SVTSKVAASALATRIFDIPFyfssNEWHL-LLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVII 321

                        250       260
                 ....*....|....*....|....*.
gi 73915029  225 ILSMGFYKLAFFHLLTHALFkaLLFM 250
Cdd:CHL00049 322 GIIVGDSNDGYASMITYMLF--YIFM 345
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
 1-255 6.14e-04

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 40.93  E-value: 6.14e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029    1 SFVLLISSLV-IFYSNQYMEEDYNINRFILLVLMSVTSKKLLIISPNLISILLGSDGLGLVSYcLVIYFQNVKSYNAGML 79
Cdd:PRK06459  47 SFFSIISTIVwILASLYSIEYDHYGKWLSSLYILTILGMAIVLTSDNYLLFLAGWEIMTIPSY-VAIALTKKNKRPAFVF 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   80 TALSNrigdvallLAIAWMLNYGSWNYIFYLDMMKNNFEMMIIGALVMLAAMTKSAQIPF--SSWLPAAMA-APTPVSAl 156
Cdd:PRK06459 126 MAFGE--------LSTVLILAGFAWAFIISGTTNFSYLPSPVPLILASFGFIIKMGMMPFlvSEWLPIAHGnAPSNFSA- 196

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  157 VHSSTLVTAGVYLLIRFNDLLMNW---WMSQFLLLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSM----- 228
Cdd:PRK06459 197 ILSATMTLMGVYGILKMTILTQTIpigYFGLTILAIGAFSILFGALYAYVSENVKGLLAFSTIENNGAILVALGLymvtk 276

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 73915029  229 -------GFYKLA-FFHLLTHALFKALLFMCAGSI 255
Cdd:PRK06459 277 qlitsieHFSLITvILYSFAHSVAKTGLFLSSGLQ 311
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
5-278 9.24e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 40.40  E-value: 9.24e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029    5 LISSLVIFysnQYMEEDYNINRFILLVLMSVTSKKLLIISPNLISILLGSDGLGLVSYCLVIYFQNVKSYNAGMLTALSN 84
Cdd:PRK06277  83 LIASLVLI---TGLGEKKSSGLYVFLMLMGLASVSAIVLADDIFNLYVFFEIAAIVQVGLVIASGTEEAYKAALKYMILG 159

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029   85 RIGDVALLLAIAWMLNY-GSWNYIFYLDMMKNNFE--MMIIGALVMLAAMTKSAQIPFSSWLPAAMAAPTP--VSALVHS 159
Cdd:PRK06277 160 NVAGSILLLGIGFLLAStGTLNITDIHNALLVNPTspVIYGGLLLLIFGLLYGSGLPPFHTIKSDIYAKAKpfGSALLQT 239

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  160 S---TLVTAGVYLLIRFNDLLMNWWMSQFLLLVSGLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSMGF---YKL 233
Cdd:PRK06277 240 FskfVLVALMLVIFKLFGGLSYFPSAQGVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTplgIVA 319

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 73915029  234 AFFHLLTHALFKALLFMCAGsIIHNMKNSQDIRMMGSLSMSMPLT 278
Cdd:PRK06277 320 GIFHAINHVIYKSALFLGAG-IVSYRTKTSNLRKLGGLLPVMPVV 363
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
137-265 4.82e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 38.14  E-value: 4.82e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 73915029  137 IPFSSWLP-AAMAAPTPVSALVhSSTLVTAGVYLLIRFN-DLLMNWW--MSQFLLLVSGLTMFMAGLGANFEFDLKKIIA 212
Cdd:PRK06473 222 VPFHTWLPdAHVEASTPVSVLL-AGVLLKLGTYGLLRFGvGLFPEAWvyLAPWLATWAVVSVLYGASCAIAQKDMKKMVA 300

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 73915029  213 LSTLSQLGLMM---------SILSmgfyklAFFHLLTHALFKALLFMCAGsIIHNMKNSQDI 265
Cdd:PRK06473 301 YSSIGHMGYILlaaaaatplSILA------AVFQMISHGLISALLFLLVG-VVYKKTGSRDV 355
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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