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Conserved domains on  [gi|76009032|gb|ABA38978|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Parabuteo leucorrhous]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009572)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-172 9.81e-54

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214424  Cd Length: 174  Bit Score: 168.00  E-value: 9.81e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76009032    1 MAYFVLLLGVGFVLGGLAVASNPSPYYGVVGLVLGSIVGCGWLVSLGVPFVALVLFMVYLGGMLVVFVYSVCLAADPFPE 80
Cdd:MTH00115   1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76009032   81 AWGDWRVLGYGAGM--ALVLVVGVVVSGVEYWKVGVATVDGGGIFVERLDFSGVAMFYSWGAGMLLVAGWGLLLTLFVVL 158
Cdd:MTH00115  81 AWGDWGVVGYVVGFvlVVVVVGVVVGGLWGMEGVGVVTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVL 160

                        170
                 ....*....|....
gi 76009032  159 ELVRGLSCGAIRAV 172
Cdd:MTH00115 161 ELVRGLSRGALRAF 174
 
Name Accession Description Interval E-value
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-172 9.81e-54

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 168.00  E-value: 9.81e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76009032    1 MAYFVLLLGVGFVLGGLAVASNPSPYYGVVGLVLGSIVGCGWLVSLGVPFVALVLFMVYLGGMLVVFVYSVCLAADPFPE 80
Cdd:MTH00115   1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76009032   81 AWGDWRVLGYGAGM--ALVLVVGVVVSGVEYWKVGVATVDGGGIFVERLDFSGVAMFYSWGAGMLLVAGWGLLLTLFVVL 158
Cdd:MTH00115  81 AWGDWGVVGYVVGFvlVVVVVGVVVGGLWGMEGVGVVTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVL 160

                        170
                 ....*....|....
gi 76009032  159 ELVRGLSCGAIRAV 172
Cdd:MTH00115 161 ELVRGLSRGALRAF 174
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
17-160 9.99e-10

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 54.05  E-value: 9.99e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76009032    17 LAVASNPSPYYGVVGLVLGSIVGCGWLVSLGVPFVALVLFMVYLGGMLVVFVYSVCL-AADPFPEAWGDWRVLGYGAGMA 95
Cdd:pfam00499   1 LGVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLlLAEEEPEKLRSGLPLAALLLGL 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 76009032    96 LVLVVGVVVSGVEYWKVGVATVDGGGIFVERLdfsGVAMFYSWGaGMLLVAGWGLLLTLFVVLEL 160
Cdd:pfam00499  81 LLLALLLLVLLSASLTPAAAAAAPDVGNIEAI---GELLFTDYL-LPFELASVLLLVALVGAIVL 141
 
Name Accession Description Interval E-value
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 1-172 9.81e-54

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 168.00  E-value: 9.81e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76009032    1 MAYFVLLLGVGFVLGGLAVASNPSPYYGVVGLVLGSIVGCGWLVSLGVPFVALVLFMVYLGGMLVVFVYSVCLAADPFPE 80
Cdd:MTH00115   1 MMYFVFLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76009032   81 AWGDWRVLGYGAGM--ALVLVVGVVVSGVEYWKVGVATVDGGGIFVERLDFSGVAMFYSWGAGMLLVAGWGLLLTLFVVL 158
Cdd:MTH00115  81 AWGDWGVVGYVVGFvlVVVVVGVVVGGLWGMEGVGVVTVDSGGLFVVRLDFSGVSLFYSSGGGGLLVCGWGLLLTLFVVL 160

                        170
                 ....*....|....
gi 76009032  159 ELVRGLSCGAIRAV 172
Cdd:MTH00115 161 ELVRGLSRGALRAF 174
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 1-172 1.09e-52

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 165.31  E-value: 1.09e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76009032    1 MAYFVLLLGVGFVLGGLAVASNPSPYYGVVGLVLGSIVGCGWLVSLGVPFVALVLFMVYLGGMLVVFVYSVCLAADPFPE 80
Cdd:MTH00138   1 MTYLMSLFLLGLVLGLVAVASNPSPYFAALGLVVVAGVGCGVLVGHGGSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76009032   81 AWGDWRVLGYGAGMALVLVVGVVVSGVEYWKVGVATVDG-GGIFVERLDFSGVAMFYSWGAGMLLVAGWGLLLTLFVVLE 159
Cdd:MTH00138  81 SWGSWSVLGYVVGYLVGVVLAAGLFWGGWYEGSWVVVDElKEFSVLRGDVGGVALMYSSGGGMLVICAWVLLLTLFVVLE 160

                        170
                 ....*....|...
gi 76009032  160 LVRGLSCGAIRAV 172
Cdd:MTH00138 161 LTRGLSRGALRAV 173
ND6 MTH00065
NADH dehydrogenase subunit 6; Provisional
 1-172 2.30e-47

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214415  Cd Length: 172  Bit Score: 151.92  E-value: 2.30e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76009032    1 MAYFVLLLGVGFVLGGLAVASNPSPYYGVVGLVLGSIVGCGWLVSLGVPFVALVLFMVYLGGMLVVFVYSVCLAADPFPE 80
Cdd:MTH00065   1 MMYLGFLGMLGLVVGLVAVASNPSPYFAALGLVLGAVCGCLVLVELGVSFLSLVLFLIYLGGMLVVFAYSAALAAEPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76009032   81 AWGDWRVLGYGAGMALVLVVGVVVSGVEYWKVGVATVDGGGIFVERLDFSGVAMFYSWGAGMLLVAGWGLLLTLFVVLEL 160
Cdd:MTH00065  81 AWGSWSVLVYVLFYLLLLIVGYILFGCNFSLEFLFTNYDTEFSVVGYDWGGVGLMYSSGGWFLMISGWVLLLTLFVVLEV 160

                        170
                 ....*....|..
gi 76009032  161 VRGLSCGAIRAV 172
Cdd:MTH00065 161 TRGLSRGSLRAV 172
ND6 MTH00109
NADH dehydrogenase subunit 6; Provisional
 1-163 4.85e-27

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214421  Cd Length: 175  Bit Score: 99.88  E-value: 4.85e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76009032    1 MAYFVLLLGVGFVLGGLAVASNPSPYYGVVGLVLGSIVGCGWLVSLGVPFVALVLFMVYLGGMLVVFVYSVCLAADPFPE 80
Cdd:MTH00109   2 MMYIVFILSVLFVLGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEEYPE 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76009032   81 AWGDWRVLGYGAGMALVLVVGVVVSGVEYWKVGVATV----------DGGGIFVERLDFSGVAMFYSWGAGMLLVAGWGL 150
Cdd:MTH00109  82 TWVSNKVVLGALLLGLLMELLLVLYVLKDDEVEVVFNfnglgdwviyDTGGSGFFSEDAMGVAALYSYGTWLVVVTGWSL 161

                        170
                 ....*....|...
gi 76009032  151 LLTLFVVLELVRG 163
Cdd:MTH00109 162 FIGVFVIIEITRG 174
ND6 MTH00214
NADH dehydrogenase subunit 6; Provisional
 1-172 8.38e-23

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214461  Cd Length: 168  Bit Score: 88.89  E-value: 8.38e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76009032    1 MAYFVLLLGVGFVLGGLAVASNPSPYYGVVGLVLGSIVGCGWLVSLGVPFVALVLFMVYLGGMLVVFVYSVCLAADPFPE 80
Cdd:MTH00214   1 MLYFVFLLMFGFLLGLMMVASSPSPYFGALGLVLLALLGCFLLLSHGNSFLGLILFLIYLGGMLVVFSYSAALAADPYPE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76009032   81 AWGDWRVLGYGAGMALVLVVGVVVSGVEYWKVGVATVDGGGifveRLDFSGVAMFYSWGAGMLLVAGWGLLLTLFVVLEL 160
Cdd:MTH00214  81 SWGGWSVLLFFLFYLLGLGFVGFYFYGGWEMLSWMGVDEAN----NLDLSGVSDLYSRGFFLLLLGGVVLFLVLFVVLEL 156

                        170
                 ....*....|..
gi 76009032  161 VRGLSCGAIRAV 172
Cdd:MTH00214 157 VRGLSRGALRVV 168
ND6 MTH00045
NADH dehydrogenase subunit 6; Validated
 1-171 1.15e-14

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 177120  Cd Length: 162  Bit Score: 67.62  E-value: 1.15e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76009032    1 MAYFVLLLgvgFVLGGLAVASNPSPYYGVVGLVLGSIVGCGWLVSLGVPFVALVLFMVYLGGMLVVFVYSVCLAADPFPE 80
Cdd:MTH00045   2 VFYLFLIL---MLFGSTLVFYSLSPYYSALGLVLVSLSGCLLLSLLGLSFLALLLLLIYMGGMLVVFVYSSALSAERYPS 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76009032   81 AWGDWRVLGYgagmaLVLVVGVVVSGVEYWkvgVATVDGGGIFVERLDFSGVAMFYSWGAGMLLVAGWGLLLTLFVVLEL 160
Cdd:MTH00045  79 VSNLGEVLVL-----SLLLSLWVFISFDNF---LELSNNNWSLVSLSDLVGSSELYNSGGLYLLLGGFILLVALVVALVI 150

                        170
                 ....*....|.
gi 76009032  161 VRGLSCGAIRA 171
Cdd:MTH00045 151 SFGHEYSSLRA 161
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
17-160 9.99e-10

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 54.05  E-value: 9.99e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 76009032    17 LAVASNPSPYYGVVGLVLGSIVGCGWLVSLGVPFVALVLFMVYLGGMLVVFVYSVCL-AADPFPEAWGDWRVLGYGAGMA 95
Cdd:pfam00499   1 LGVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLlLAEEEPEKLRSGLPLAALLLGL 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 76009032    96 LVLVVGVVVSGVEYWKVGVATVDGGGIFVERLdfsGVAMFYSWGaGMLLVAGWGLLLTLFVVLEL 160
Cdd:pfam00499  81 LLLALLLLVLLSASLTPAAAAAAPDVGNIEAI---GELLFTDYL-LPFELASVLLLVALVGAIVL 141
ND6 MTH00021
NADH dehydrogenase subunit 6; Validated
 8-84 1.08e-03

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 214401 [Multi-domain]  Cd Length: 188  Bit Score: 37.78  E-value: 1.08e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 76009032    8 LGVGFVLGGLAVASNPSPYYGVVGLVLGSIVGCGWLVSLGVPFVALVLFMVYLGGMLVVFVYSVCLAADP-FPEAWGD 84
Cdd:MTH00021   2 FSLGIIGSGIMVISALNPVHSIFWLVVVFVNSAVFFILLGLDFLALMFLIIYVGAIAILFLFVIMLLNLTdFPPAFGG 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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