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Conserved domains on  [gi|89275805|gb|ABD66262|]
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NADH dehydrogenase subunit 4, partial (mitochondrion) [Trachemys yaquia]

Protein Classification

proton-conducting transporter membrane subunit( domain architecture ID 1562513)

proton-conducting transporter membrane subunit such as NADH dehydrogenase subunit 2, 4, or N, which shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain

EC:  7.1.-.-
Gene Ontology:  GO:0005886

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Proton_antipo_M super family cl39059
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-234 4.98e-140

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


The actual alignment was detected with superfamily member MTH00124:

Pssm-ID: 476862 [Multi-domain]  Cd Length: 457  Bit Score: 399.96  E-value: 4.98e-140
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVIAATLT 80
Cdd:MTH00124 224 PIAGSMVLAAILLKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMI 303

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   81 QTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTINLMGELTIIT 160
Cdd:MTH00124 304 QTPWSLSGAMILMIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMT 383

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 89275805  161 SLFNWSNITILMTGSGTIITATYTLYMLSTTQWGGTPSYIKTMPPTHTREHLLMILHILPMTLLVMKPELIWGT 234
Cdd:MTH00124 384 SLFNWSPTTIILTGLATLITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
 
Name Accession Description Interval E-value
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 1-234 4.98e-140

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 399.96  E-value: 4.98e-140
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVIAATLT 80
Cdd:MTH00124 224 PIAGSMVLAAILLKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMI 303

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   81 QTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTINLMGELTIIT 160
Cdd:MTH00124 304 QTPWSLSGAMILMIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMT 383

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 89275805  161 SLFNWSNITILMTGSGTIITATYTLYMLSTTQWGGTPSYIKTMPPTHTREHLLMILHILPMTLLVMKPELIWGT 234
Cdd:MTH00124 384 SLFNWSPTTIILTGLATLITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-224 1.80e-49

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 168.34  E-value: 1.80e-49
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPL-SKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVIAATL 79
Cdd:COG1008 240 PTAGSVLLAGVLLKMGGYGLLRFALPLFPEaSAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIF 319

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805  80 TQTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLL----LARNMqllyPLMSLWWLLASLANMAIPPTINLMGE 155
Cdd:COG1008 320 ALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIAdlggLAKRM----PVLAALFLLAALASLGLPGTSGFVGE 395

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 89275805 156 LTIITSLFNWSNITILMTGSGTIITATYTLYMLSTTQWGGTPSYIKTMPPTHTREHLLMILHILPMTLL 224
Cdd:COG1008 396 FLVLLGAFQVNPWLAILAALGLILTAAYLLWMYQRVFFGPLKEELAELPDLNPRELAVLAPLAALILLL 464
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-178 4.00e-44

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 149.77  E-value: 4.00e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805     1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVIAATLT 80
Cdd:pfam00361 113 PTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGA 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    81 QTQWAYTGAITLMIAHGLTSSMLFCLA-NTNYERTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTINLMGELTII 159
Cdd:pfam00361 193 GTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLIL 272

                         170
                  ....*....|....*....
gi 89275805   160 TSLFNWSNITILMTGSGTI 178
Cdd:pfam00361 273 AAAVAASWIFLVLAGVVGS 291
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 1-225 1.06e-41

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 147.78  E-value: 1.06e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805     1 PIAGSMILAAVLLKLGGYGIIRIMTTLNP-LSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVIAATL 79
Cdd:TIGR01972 234 PTAGSVILAGVLLKMGTYGFLRFNLPLFPdASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIF 313

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    80 TQTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTINLMGELTII 159
Cdd:TIGR01972 314 SFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLIL 393

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 89275805   160 TSLFNWSNITILMTGSGTIITATYTLYMLSTTQWGG-TPSYIKTMPPTHTREhLLMILHILPMTLLV 225
Cdd:TIGR01972 394 LGSFKVNPVVAFLAALGIVLAAAYMLTLYKRVFFGElSNPEVAEFPDLNGRE-IAVLAPLVVLILFL 459
 
Name Accession Description Interval E-value
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 1-234 4.98e-140

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 399.96  E-value: 4.98e-140
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVIAATLT 80
Cdd:MTH00124 224 PIAGSMVLAAILLKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMI 303

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   81 QTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTINLMGELTIIT 160
Cdd:MTH00124 304 QTPWSLSGAMILMIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMT 383

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 89275805  161 SLFNWSNITILMTGSGTIITATYTLYMLSTTQWGGTPSYIKTMPPTHTREHLLMILHILPMTLLVMKPELIWGT 234
Cdd:MTH00124 384 SLFNWSPTTIILTGLATLITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
 1-235 3.85e-128

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 370.02  E-value: 3.85e-128
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVIAATLT 80
Cdd:MTH00068 224 PIAGSMILAAVLLKLGGYGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALI 303

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   81 QTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTINLMGELTIIT 160
Cdd:MTH00068 304 QTPWSFSGAIILMISHGLTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMV 383

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 89275805  161 SLFNWSNITILMTGSGTIITATYTLYMLSTTQWGGTPSYIKTMPPTHTREHLLMILHILPMTLLVMKPELIWGTF 235
Cdd:MTH00068 384 SLFNWSNWTILITGLGTLITAAYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPMLLLILKPELISGMF 458
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
 1-236 2.70e-117

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 342.26  E-value: 2.70e-117
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVIAATLT 80
Cdd:MTH00110 224 PIAGSMVLAAILLKLGGYGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILI 303

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   81 QTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTINLMGELTIIT 160
Cdd:MTH00110 304 QTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIM 383

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 89275805  161 SLFNWSNITILMTGSGTIITATYTLYMLSTTQWGGTPSYIKTMPPTHTREHLLMILHILPMTLLVMKPELIWGTFY 236
Cdd:MTH00110 384 SSFSWSNITIILMGLNMLITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSLNPKIILGPTY 459
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 1-233 3.07e-105

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 311.89  E-value: 3.07e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVIAATLT 80
Cdd:MTH00127 225 PIAGSMVLAAVLLKLGGYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILI 304

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   81 QTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTINLMGELTIIT 160
Cdd:MTH00127 305 QTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIIT 384

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 89275805  161 SLFNWSNITILMTGSGTIITATYTLYMLSTTQWGGTPSYIKTMPPTHTREHLLMILHILPMTLLVMKPELIWG 233
Cdd:MTH00127 385 SLFNWSPWTLALTGLGTLITAGYSLYMFLMTQRGPLPDHIIALNPSHTREHLLMALHLLPLLLLILKPELIWG 457
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
 1-231 1.91e-95

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 286.45  E-value: 1.91e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVIAATLT 80
Cdd:MTH00206 220 PVAGSMVLAGVLLKLGGYGMMRIILILGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILS 299

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   81 QTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTINLMGELTIIT 160
Cdd:MTH00206 300 GSPWGFKGALLLMIAHGLVSSALFCLANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIIT 379

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 89275805  161 SLFNWSNITILMTGSGTIITATYTLYMLSTTQWGGTPSYIKTMPPTHTREHLLMILHILPMTLLVMKPELI 231
Cdd:MTH00206 380 SLFSWSNFTLPLLGLGFLFTAIYSLYMFVMTQHGKTPNHLLSLSPSSTREHLLLFLHLFPVILLILNPNLI 450
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
 1-231 1.13e-80

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 248.74  E-value: 1.13e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    1 PIAGSMILAAVLLKLGGYGIIRIMTTLN-PLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVIAATL 79
Cdd:MTH00044 225 PVAGSMILAAILLKLGGYGLIRLINLFSlPSANNISFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIF 304

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   80 TQTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTINLMGELTII 159
Cdd:MTH00044 305 SGTNWGINGALILMIAHGLVSSALFCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLII 384

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 89275805  160 TSLFNWSNITILMTGSGTIITATYTLYMLSTTQWGGTPSYIKTMPPTHTREHLLMILHILPMTLLVMKPELI 231
Cdd:MTH00044 385 SSIISWSILSFPIIGLATVFGAIYSLLIYQLTNSGSFPSWISNVSPISSREHLLIFLHLLPLILIIINPNII 456
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-231 5.31e-79

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 243.91  E-value: 5.31e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVIAATLT 80
Cdd:MTH00163 212 PVSGSMILAGVLLKLGGYGLLRVMSFFSKLGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMT 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   81 QTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTINLMGELTIIT 160
Cdd:MTH00163 292 FSYWGLMGSLLMMIGHGLCSSGLFCLANIIYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLIN 371

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 89275805  161 SLFNWSNITILMTGSGTIITATYTLYMLSTTQWGGTPSYIKTMPPTHTREHLLMILHILPMTLLVMKPELI 231
Cdd:MTH00163 372 SLISWSKLSMIFLMLLSFFSAAYSLYLYSYSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLF 442
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
 1-231 2.39e-74

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 231.27  E-value: 2.39e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVIAATLT 80
Cdd:MTH00150 183 PVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQSDVKSLIAYSSVGHMSLVLAGVLS 262

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   81 QTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTINLMGELTIIT 160
Cdd:MTH00150 263 NTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWWFLFCIINMAAPPSLNLLSEIMIFP 342

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 89275805  161 SLFNWSNITILMTGSGTIITATYTLYMLSTTQWGGTPSYIKTMPPTHTREHLLMILHILPMTLLVMKPELI 231
Cdd:MTH00150 343 SLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLLLLLHWVPLLLLILKSDLL 413
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
 1-231 2.92e-67

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 214.22  E-value: 2.92e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVIAATLT 80
Cdd:MTH00014 218 PVAGSMILAGILLKLGGYGLLRMSSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMS 297

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   81 QTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTINLMGELTIIT 160
Cdd:MTH00014 298 NTSWGWQGALAMMIAHGLCSSALFALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLT 377

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 89275805  161 SLFNWSNITILMTGSGTIITATYTLYMLSTTQWGGTPSYIKTMPPTHTREHLLMILHILPMTLLVMKPELI 231
Cdd:MTH00014 378 SILSSSLSTAILLAITSFLAAAYSLFLYTSTQHGSPPSFMNPLNLFTPRNHTLMTLHLVPLFILILKPDLI 448
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
 1-231 5.91e-65

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 207.91  E-value: 5.91e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVIAATLT 80
Cdd:MTH00205 216 PVSGSMILAGVLLKLGGYGLIRITSMLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFS 295

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   81 QTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTINLMGELTIIT 160
Cdd:MTH00205 296 NTSWGMNGAIIMMVAHGLCSSGMFALANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIM 375

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 89275805  161 SLFNWSNITILMTGSGTIITATYTLYMLSTTQWGGTPSYIKTMPPTHTREHLLMILHILPMTLLVMKPELI 231
Cdd:MTH00205 376 SLLSSSKISGIPLSLISFLSGAYSLYLYSQSQHGKVSSQISSFLAISEREYYILILHWFPLNILILKLKIF 446
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-224 1.80e-49

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 168.34  E-value: 1.80e-49
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPL-SKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVIAATL 79
Cdd:COG1008 240 PTAGSVLLAGVLLKMGGYGLLRFALPLFPEaSAYFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIF 319

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805  80 TQTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLL----LARNMqllyPLMSLWWLLASLANMAIPPTINLMGE 155
Cdd:COG1008 320 ALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIAdlggLAKRM----PVLAALFLLAALASLGLPGTSGFVGE 395

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 89275805 156 LTIITSLFNWSNITILMTGSGTIITATYTLYMLSTTQWGGTPSYIKTMPPTHTREHLLMILHILPMTLL 224
Cdd:COG1008 396 FLVLLGAFQVNPWLAILAALGLILTAAYLLWMYQRVFFGPLKEELAELPDLNPRELAVLAPLAALILLL 464
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-178 4.00e-44

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 149.77  E-value: 4.00e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805     1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVIAATLT 80
Cdd:pfam00361 113 PTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGA 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    81 QTQWAYTGAITLMIAHGLTSSMLFCLA-NTNYERTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTINLMGELTII 159
Cdd:pfam00361 193 GTIYGIQAAIFHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLIL 272

                         170
                  ....*....|....*....
gi 89275805   160 TSLFNWSNITILMTGSGTI 178
Cdd:pfam00361 273 AAAVAASWIFLVLAGVVGS 291
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 1-225 1.06e-41

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 147.78  E-value: 1.06e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805     1 PIAGSMILAAVLLKLGGYGIIRIMTTLNP-LSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVIAATL 79
Cdd:TIGR01972 234 PTAGSVILAGVLLKMGTYGFLRFNLPLFPdASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIF 313

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    80 TQTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTINLMGELTII 159
Cdd:TIGR01972 314 SFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLIL 393

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 89275805   160 TSLFNWSNITILMTGSGTIITATYTLYMLSTTQWGG-TPSYIKTMPPTHTREhLLMILHILPMTLLV 225
Cdd:TIGR01972 394 LGSFKVNPVVAFLAALGIVLAAAYMLTLYKRVFFGElSNPEVAEFPDLNGRE-IAVLAPLVVLILFL 459
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 1-224 1.22e-40

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 144.96  E-value: 1.22e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPL-SKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVIAATL 79
Cdd:PRK05846 242 PTAGSVLLAGILLKMGAYGLLRFSLPLFPDaSHEFAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVTLGIF 321

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   80 TQTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLL----LARNMqllyPLMSLWWLLASLANMAIPPTINLMGE 155
Cdd:PRK05846 322 AGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIAdyggLAKVM----PVLAAFFLFFAMASLGLPGTSGFVGE 397

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 89275805  156 LTIITSLFNWSNITILMTGSGTIITATYTLYMLSTTQWGGTPSYIKTMPPTHTREhLLMILHILPMTLL 224
Cdd:PRK05846 398 FLILLGSFQVNPVIAFIATTGLILAAVYSLWLYQRVMFGPVKNEVAKLKDLNGRE-LLILLPLVALLLL 465
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 1-231 1.21e-39

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 142.51  E-value: 1.21e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPFMV-LALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVIAATL 79
Cdd:MTH00204 240 PVAGSVILAGILLKLGGYGFLRFSWPLFPAASEYFAPLIVmLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVPLGLF 319

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   80 TQTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTINLMGELTII 159
Cdd:MTH00204 320 THTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLFVIIMLVLSLANMGFPLSCNFVGEFFSL 399

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 89275805  160 TSLFNWSNITILMTGSGTIITATYTLYMLSTTQWGGTPSYIKTMPPTHTREHLLMILHILPMTLLVMKPELI 231
Cdd:MTH00204 400 LAAFEYSLGLGVLVTSGMVWSAAYSLYLYNRISFGGGSNYLLFSRDLNRRELLAILPLIIAIFLLGIVPFII 471
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 1-200 1.02e-38

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 139.80  E-value: 1.02e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPF-MVLALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVIAATL 79
Cdd:MTH00217 237 PVAGSVILAGVLLKLGGYGFIRFSWPLLPEASEYFSPLiQTLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVTLGIF 316

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   80 TQTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTINLMGELTII 159
Cdd:MTH00217 317 SHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVITMPLFGILMLLLVLANASIPLSCNFVGEFLSL 396

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 89275805  160 TSLFNWSNITILMTGSGTIITATYTLYMLSTTQWGGTPSYI 200
Cdd:MTH00217 397 LAAFEYSYIVGVLASLGMVLSAGYSIYLYNRVCFGAPSKYL 437
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 1-231 1.51e-35

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 131.58  E-value: 1.51e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPL-SKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVIAATL 79
Cdd:MTH00226 261 PVAGSVLLAGILLKLGGYGLVRLSWPILPLgAQNLAPAVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMGLVSITLV 340

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   80 TQTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTINLMGELTII 159
Cdd:MTH00226 341 THDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGNFIGEYLSI 420

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 89275805  160 TSLFNWSNITILMTGSGTIITATYTLYMLSTTQWGGTPSYIKTMPPTHTREHLLMILHILPMTLLVMKPELI 231
Cdd:MTH00226 421 LSSFNWNPIIGVFVCSGVILSAVYSFYFANRVTFGAPGNLITFARDVNRREFYITASMVFFAFLIGIYPIFI 492
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 4-188 3.26e-25

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 102.80  E-value: 3.26e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    4 GSMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPfmVLALWGV--IMTGSIC-LRQTDLKSLIAYSSVSHMGLVIAATLT 80
Cdd:PRK12561 219 VSMILAGVLLKMGGYALIRFNVQMLPDAHVYFAP--ALAILGVvnIIYGALNaFAQDNVKRRLAYSSVSHMGFVLLGIAA 296

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   81 QTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHsrTLLLAR--NMQLLYPLMSLWWLLASLANMAIPPTINLMGELTI 158
Cdd:PRK12561 297 FTDLGISGAMLQMISHGLIAAALFFLTGVTYERTH--TLSIPNmgGLAKVMPKTFALFTASSMASLALPGMSGFVSELTV 374

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 89275805  159 ---ITSLFNWSN----ITILMTGSGTIITATYTLYML 188
Cdd:PRK12561 375 flgITSSDVYSStfrtITILLAAVGLILTPIYLLSML 411
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
 1-188 9.32e-25

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 100.75  E-value: 9.32e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    1 PIAGSMILAAVLLKLGGYGIIRIMttlNPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVIAATLT 80
Cdd:MTH00094 182 PTTASMLLAGLLLKLGTAGFLRIL---GSLNFVYNNFWIIFSLLGMILSSFCCVFQSDSKSLAAYSSVTHMSFLLLSLVY 258

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   81 QTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTINLMGELTIIT 160
Cdd:MTH00094 259 MSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRLIYFMNSFFSSSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIIS 338

                        170       180
                 ....*....|....*....|....*...
gi 89275805  161 SLFNWSNITILMTGSGTIITATYTLYML 188
Cdd:MTH00094 339 NSFMKNKFSFFFIFFYFLVSFYYSLFLI 366
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-179 7.42e-23

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 95.60  E-value: 7.42e-23
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   1 PIAGSMILAAVLLKLGGYGIIRIMTTLNP--LSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVIAAT 78
Cdd:COG0651 236 PSPVSALLSGLLTKVGVYAILRVLTLLFGadPALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGL 315

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805  79 LTQTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTINLMGELTI 158
Cdd:COG0651 316 GLGTPLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLL 395

                       170       180
                ....*....|....*....|....*
gi 89275805 159 ITSLFN----WSNITILMTGSGTII 179
Cdd:COG0651 396 LQAALEagawLLAAVLLLSSLLTLA 420
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
5-212 4.09e-22

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 94.00  E-value: 4.09e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    5 SMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPFmvLALWGVI--MTGSIC-LRQTDLKSLIAYSSVSHMGLVIAATLTQ 81
Cdd:PRK06473 240 SVLLAGVLLKLGTYGLLRFGVGLFPEAWVYLAPW--LATWAVVsvLYGASCaIAQKDMKKMVAYSSIGHMGYILLAAAAA 317

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   82 TQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLLLAR---NMQLLYPLMSLWWLLASLANMAIPPTINLMGELTI 158
Cdd:PRK06473 318 TPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLRgllNPERGLPITGSLMILGVMASAGIPGMVGFIAEFLV 397

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 89275805  159 ITSLFNWSNITILMTGSGTIITATYTLYMLSTTQWGGTPSYIKTMPPTHTREHL 212
Cdd:PRK06473 398 FRGSFPIFPVQTLLCMIGTGLTAVYFLLLVNRVFFGRLTAELSNLPRVLWSERL 451
ndhD CHL00011
NADH dehydrogenase subunit 4
 6-188 4.30e-22

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 93.86  E-value: 4.30e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    6 MILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPF-MVLALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQW 84
Cdd:CHL00011 247 MLLAGILLKMGAYGLIRINMELLPHAHSIFSPWlVIVGAIQIIYAASTSLGQRNLKKRIAYSSVSHMGFIIIGIGSITDT 326

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   85 AYTGAITLMIAHGLTSSMLFCLANTNYERThsRTLLLAR--NMQLLYPLMSLWWLLASLANMAIPPTINLMGELT----I 158
Cdd:CHL00011 327 GLNGAILQIISHGFIGAALFFLAGTSYDRI--RLVYLDEmgGIAIPMPKIFTMFSSFSMASLALPGMSGFVAELIvffgI 404

                        170       180       190
                 ....*....|....*....|....*....|...
gi 89275805  159 ITS---LFNWSNITILMTGSGTIITATYTLYML 188
Cdd:CHL00011 405 ITSqkyLLMPKILITFVMAIGMILTPIYLLSML 437
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 6-188 1.30e-18

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 83.99  E-value: 1.30e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    6 MILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPFM-VLALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQW 84
Cdd:PRK02546 249 MLLAGILLKMGGYALLRMNAGMLPDAHAQFAPLLiVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGIGSFTDL 328

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   85 AYTGAITLMIAHGLTSSMLFCLANTNYERTHsrTLLL------ARNMQLLYPLmslwWLLASLANMAIPPTINLMGELTI 158
Cdd:PRK02546 329 GTSGAMLQMISHGLIGASLFFLVGATYDRTH--TLMLdemggvGQKMRKMFAM----WTACSLASLALPGMSGFVAELMV 402

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 89275805  159 ITSL-------FNWSNITILMTGSGTIITATYTLYML 188
Cdd:PRK02546 403 FVGFatsdaytLPFRVVVVFLAAVGVILTPIYLLSML 439
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 5-225 2.40e-16

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 77.32  E-value: 2.40e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    5 SMILAAVLLKLGGYGIIRIMTT-------LNPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVIAA 77
Cdd:PRK12667 258 SAMLSGLVVNVGAYAIIRFLYTifgispsLIDFRAALSPILIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMG 337

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   78 TLTQTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTINLMGELT 157
Cdd:PRK12667 338 IGIGTQLGLAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLL 417

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805  158 IITSLFNWSNITILMTgsGTIITATYTLYMLSTTQ--WGGTPSYIKTmppTHTREHLLMILHILPMTLLV 225
Cdd:PRK12667 418 LFNALLESGFYLPALV--LLIASAISLVGYFRAWYslFFGKPKSGEE---VEHKESPSMSVVILVLALAV 482
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 5-224 2.70e-16

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 77.23  E-value: 2.70e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    5 SMILAAVLLKLGGYGIIRIMTTL----NPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVIAATLT 80
Cdd:PRK08375 237 TALLSGLVTKVAVYALIRIYFTVfggdFRFALGLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLAL 316

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   81 QTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLL----LARNMqllyPLMSLWWLLASLANMAIPPTINLMGEL 156
Cdd:PRK08375 317 LTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLSelsgLGRRM----PLTAAAFAVASLSLIGVPPTSGFVSKW 392

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 89275805  157 TIITSLF---NWSNITILMTGSgtIITATYTLYMLSTTQWGGTPSYiktMPPTHTREHLLMILHILPMTLL 224
Cdd:PRK08375 393 YLVVGAVeagQWLVLAVLLASS--LLALLYFLRIWYRAFFGPPPPG---SEAPKQEAPLGMLAPSLALALL 458
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
3-194 3.07e-14

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 71.28  E-value: 3.07e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    3 AGSMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPfmVLALWGVI--MTGS-ICLRQTDLKSLIAYSSVSHMGLVIAATL 79
Cdd:PRK07363 238 AVAILLGGVLAKLGTYGLLRFGLQLFPQTWSLVAP--GLAIIGTIsvIYGAlSAIAQKDIKRMVAYSSIGHMGYILVAAA 315

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   80 TQTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTL-LLARNMQLL--YPLMSLWWLLASLANMAIPPTINLMGEL 156
Cdd:PRK07363 316 AGTQLSLLGAVAQMISHGLILALLFHLVGIVERKVGTRDLdVLNGLMNPIrgLPLTSALLVLAGMASAGIPGLVGFVAEF 395

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 89275805  157 TIITSLFNWSNITILMTGSGTIITATYTLYMLSTTQWG 194
Cdd:PRK07363 396 IVFQGSFSTFPIPTLLCIVASGLTAVYFVILLNRTCFG 433
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 5-224 1.73e-12

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 66.11  E-value: 1.73e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    5 SMILAAVLLKLGGYGIIR--IMTTLNPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVIAATLTQT 82
Cdd:PRK06458 249 SALLSGVLLNVALYAVLRyyILIDAAIGSDFPGRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGG 328

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   83 QWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTINLMGELTIITSL 162
Cdd:PRK06458 329 PLGIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILTAG 408

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 89275805  163 FN---WSNITILMTGSGTIITAtyTLYMLSTTQWGGtpsyiktmPPTHTREHLLMILHILPMTLL 224
Cdd:PRK06458 409 LArgpLLIAILLLLLLTLAFAA--LVRRVAGMVFGE--------PPEAVNRGDLGWLTTSPMFVH 463
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 47-225 2.05e-10

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 60.17  E-value: 2.05e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805  47 IMTGSICLRQTDLKSLIAYSSVSHMGLVIAATLTQtqwAYTGAITLMIAHGLTSSMLFCLANTNYERTHSR--TLL--LA 122
Cdd:COG1009 287 LFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVG---AYVAALFHLLTHAFFKALLFLGAGSVIHATGTRdiRKMggLR 363

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805 123 RNMQLLYPLMslwwLLASLANMAIPPTINLMGELTIITSLFNWSNITILMTGSGTI---ITATYTLYMLSTTQWGGTpsy 199
Cdd:COG1009 364 KKMPITAITF----LIGALSLAGIPPFAGFFSKEAILEAALEAGGLGPLLLAVALLgafLTAFYSFRLFFLVFFGKP--- 436

                       170       180
                ....*....|....*....|....*..
gi 89275805 200 iKTMPPTHTRE-HLLMilhILPMTLLV 225
Cdd:COG1009 437 -RPKTPKHPHEsPWLM---TLPLVVLA 459
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 5-219 7.15e-10

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 58.24  E-value: 7.15e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    5 SMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPFMV--LALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVIAATLTQT 82
Cdd:PRK08377 241 TVMFSAFVVKAGLYAMARILYLMQNANGWSSVLKLViiMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGT 320

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   83 QWAYTGAITLMIAHGLTSSMLF--------CLANTNYERTHSrtllLARNMqllyPLMSLWWLLASLANMAIPPTINLMG 154
Cdd:PRK08377 321 QAGVDAGVFHMINHAIVKALLFlavgyvgiTLGGTEIEKFEG----LGKRM----PLTALALTIGALSTVGIPLFNVFWS 392

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 89275805  155 ELTIITSLFN----WSNITILmtgSGTIITATYTLYMLSTTQWGGTPSYIKTMPPTHTREHLLMILHIL 219
Cdd:PRK08377 393 KFRIILAGLSagytWPVALVL---GASVVEAVYYFRLIHTMWFKGEGERIRENAAIGIILLLLAALIVV 458
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 5-176 4.58e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 52.81  E-value: 4.58e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    5 SMILAAVLLKLGGYGIIRIM-----TTLNPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVIAATL 79
Cdd:PRK12662 244 SVFFSGTSTKVMIYLIIRIVydvfkANFVFTTLPFNNVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVS 323

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   80 TQTQWAYTGAITLMIAHGLTSSMLFCLANT---NYERTHSRTLL-LARNMqllyPLMSLWWLLASLANMAIPPTINLMGE 155
Cdd:PRK12662 324 LNTYYGLAAAVAYIVNHSIVKSALFMVSGSisyHFGTTKLEDCLnLWKSM----PKITLAFVLLSLSLIGMPPTSGFVAK 399

                        170       180
                 ....*....|....*....|....
gi 89275805  156 LTIITSLFN---WSNITILMTGSG 176
Cdd:PRK12662 400 WYILDAFIKsnaWIGLVVLLVGSG 423
PRK12650 PRK12650
DUF4040 family protein;
47-206 4.94e-08

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 53.12  E-value: 4.94e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   47 IMTGSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTL--LLARN 124
Cdd:PRK12650 284 LMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAHALFKSSLFMLIGVVDHQAGTRDIrrLGSLW 363

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805  125 MQLLYPLMSLwwLLASLANMAIPPTINLMGELTIITSLF-----NWSNITILMT-GSGTIITATYTL-YMLSTTQWGGTP 197
Cdd:PRK12650 364 RRMPFTFVSV--TIAALSMAAVPPLFGFVSKEGMLTAFLeapggNAGVVLLLVGaALGAVFTFAYSArLVLGAFVDGPRD 441

                        170
                 ....*....|
gi 89275805  198 -SYIKTMPPT 206
Cdd:PRK12650 442 mSHVKEAPVS 451
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 5-163 6.10e-08

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 52.81  E-value: 6.10e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    5 SMILAAVLLKLGGYGIIRIMTTLnpLSKTLSYPFMVL------ALWGVIMTgsicLRQTDLKSLIAYSSVSHMGLV---- 74
Cdd:PRK08667 240 SALMSGVMLKVAVYGLVRFLMDV--LSPELWWGVLILlagsisALLGVIYA----LKEHDLKGLLAYSSIENIGIIlmgi 313

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   75 -------IAATLTQTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIP 147
Cdd:PRK08667 314 glyvifgVYGLDTLALLALGGALFHSLNHALFKSLLFLTAGSVVHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALP 393

                        170
                 ....*....|....*.
gi 89275805  148 PTINLMGELTIITSLF 163
Cdd:PRK08667 394 PFNGFASELLLYESFF 409
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 1-162 7.47e-08

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 52.45  E-value: 7.47e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    1 PIAGSMILAAVLLKLGGYGIIRIMTTL--NPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVIAAT 78
Cdd:PRK08676 237 PSVVSALLSGTVLNIGIYGILRLSALLrqSGAAEQFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGI 316

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   79 LTQTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTINLMGELTI 158
Cdd:PRK08676 317 GIGTPLALFWMLFHMLAHSLVKSGLFFSAGILHRQYRSDRFDRIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFI 396


                 ....
gi 89275805  159 ITSL 162
Cdd:PRK08676 397 LLQL 400
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 9-178 2.26e-07

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 50.74  E-value: 2.26e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    9 AAVLLKLGGYGIIRIMTTLNPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSHMG---LVIAATLTQTQWA 85
Cdd:PRK06525 246 AASMVKVGVYIFARAIQSMGPIPHVIGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGymfFGLSLAILGSRLA 325

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   86 YTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTINLMGELTIITSLFNW 165
Cdd:PRK06525 326 LEGSIAYIFNHAFAKSLFFLVAGALSYSCGTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIFAAGFEL 405

                        170
                 ....*....|...
gi 89275805  166 SNITILMTGSGTI 178
Cdd:PRK06525 406 SVEYWILLPAMVL 418
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-164 2.92e-07

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 50.50  E-value: 2.92e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805  14 KLGGYGI-IRIMTT-LNPLSKTLSYPFMVLALwgVIMT-GSIC-LRQTDLKSLIAYSSVSHMGLVIAATLTQTQWAYTGA 89
Cdd:COG1007 246 KIAAFAAlLRLLVEaFPGLAADWQLLLAVLAV--LSMTvGNLAaLAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAA 323

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805  90 ITLMIAHGLTSSMLF-CLANTNYERTHSRTLL----LARNMQLLYPLMSLwwLLASLAnmAIPPTINLMGELTIITSLFN 164
Cdd:COG1007 324 LFYLLAYLFMNLGAFaVILLLSRKGGEAEEIEdlagLARRSPLLALAMTI--FLLSLA--GIPPTAGFFGKFYVFSAAVE 399
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 5-180 3.32e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 50.34  E-value: 3.32e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    5 SMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPFMVLALWGVImtgsICLRQTDLKSLIAYSSVSHMGLVIAATLtqtqw 84
Cdd:PRK07234 219 SALLSGVVVKAGVFPLVRCALDVPGLDLIVRIFGVGTALLGVL----FALLEKDLKRMLAFSTISQLGFILAAPL----- 289

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   85 ayTGAItLMIAHGLTSSMLFCLANTNYERTHSRTLLLARNMQLLYPLmslwwLLASLANMAIPPTINLMGELTIITSLFN 164
Cdd:PRK07234 290 --VGGL-YALAHGLVKSTLFLCAGALPSRNFTELISQMLGIGKWIPL-----TMASFSIAGFPLLAGFVSKVLTLKNLLP 361

                        170
                 ....*....|....*.
gi 89275805  165 WSNITILMTGSGTIIT 180
Cdd:PRK07234 362 WQAIALNLAAVGTAAS 377
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 1-104 5.59e-07

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 49.61  E-value: 5.59e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    1 PIAGSMILAAVLLKLGGYGIIRIMTTLnPLSK------------TLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSV 68
Cdd:PRK08668 227 PQSFSAVLSGQLSKLGAYGFLLVLYVL-PGTKlfsefgtyrgvpLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSV 305

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 89275805   69 SHMGLVIAATLTQTQWAYTGAITLMIAHGLTSSMLF 104
Cdd:PRK08668 306 ANGGYILVGLGLGTSLGFAGGLFHVFNHALFKGLFF 341
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 54-174 7.55e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 49.53  E-value: 7.55e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   54 LRQTDLKSLIAYSSVSHMGLVIAATLTQTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLL----LARNMqlly 129
Cdd:PRK12647 278 VRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFLVAHSLYKGALFMVAGIIDHETGTRDITklggLRRAM---- 353

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 89275805  130 PLMSLWWLLASLANMAIPPTINLMGELTIITSLFNWSNITILMTG 174
Cdd:PRK12647 354 PITAAAALLAALSMAGLPPLFGFLAKELIYEALLEAPLWSLILTV 398
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 42-226 1.10e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 48.66  E-value: 1.10e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   42 ALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLLL 121
Cdd:PRK06589 287 PIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQVDK 366

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805  122 ARNMQLLYPLMSLWWLLASLANMAIPPTINLMGELTIITSLFNWSNIT--ILMTGSGTIITATYTLYMLSTTQWGGTPSY 199
Cdd:PRK06589 367 LHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWlsIIVMLVVIASSILSALYLLKILSSIYKPSL 446

                        170       180
                 ....*....|....*....|....*..
gi 89275805  200 IKTMPPTHTREHLLMILHILPMTLLVM 226
Cdd:PRK06589 447 SENSFITKSLPYLMQISVITCCCALTL 473
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 9-195 5.29e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 46.84  E-value: 5.29e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    9 AAVLLKLGGYGIIRimttLNP-LSKTLSYPFMVLALWGVIM--TGSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWA 85
Cdd:PRK12644 242 AAAMVKAGIYLVAR----LAPgFADVPVWRPTVLVLGLATMllGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDA 317

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   86 YTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLL----LARNMQLLYPLMSLwwllaSLANMA-IPPTINLMGELTIIT 160
Cdd:PRK12644 318 ALAGLAMLLAHALFKAALFLVVGIIDHSTGTRDIRklsgLGRRQPVLAVVAAL-----AAASMAgLPPLLGFVAKEAALE 392

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 89275805  161 SLFN------WSNITILMTGSGTIITATYTLYMLsttqWGG 195
Cdd:PRK12644 393 AVLHdgalgpAGPVVLAGIVLGSILTVAYSLRFL----WGA 429
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 7-159 8.11e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 46.11  E-value: 8.11e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    7 ILAAVLLKLGGYGIIRIMTTLNPlSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWAY 86
Cdd:PRK12665 246 VFAGLLTKVGVYAIIRTHTLLFP-GGGLDTLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGL 324

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 89275805   87 TGAITLMIAHGLTSSMLFCLANTNYERTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTINLMGELTII 159
Cdd:PRK12665 325 SGAIYYVAHHITVQTTLFLVVGLIERQAGSSSLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALL 397
PRK12646 PRK12646
DUF4040 family protein;
9-225 8.12e-06

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 46.29  E-value: 8.12e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    9 AAVLLKLGGYGIIRiMTTLNPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVIA--------ATLT 80
Cdd:PRK12646 249 SATMVKAGIFLLFR-FTPLLGLSNMYIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMIMAmvgigggyAQHQ 327

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   81 QTQWAYTGAITL------MIAHGLTSSMLFCLANTNYERTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTINLMG 154
Cdd:PRK12646 328 QDAIASIYVFVLfaalfhLMNHAIFKCALFMGVGIIDHEAGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLS 407

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805  155 ELTIITSLFNWSNI-------TILMTGSG---TIITATYTLYMLSTTQWGgtPSYIKTMPPTHTREHLLMILHILPMTLL 224
Cdd:PRK12646 408 KEMFLDALTQTGQLsqfslisMIIIVFIGviaSIFTFTYALYMVKEVFWG--KYDSKVFTKKNIHEPWLFSLPSLILMVL 485


                 .
gi 89275805  225 V 225
Cdd:PRK12646 486 V 486
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
1-226 1.40e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 45.33  E-value: 1.40e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPFMVLALWGVIMTGSI-CLRQTDLKSLIAYSSVSHMGLVIAATL 79
Cdd:PRK12663 237 NTEVAALFAALLTKVGIYALIRVFTLLFPQERELLHPLLATMAAITMVIGALgALAYKDIRRIAGYQVISSIGFILLGLA 316

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   80 TQTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLLLARNMQLLYPLMSLWWLLASLANMAIPPTINLMGELTII 159
Cdd:PRK12663 317 LGTPAGINGAIFYLVHDMVVKTALFLIAGSLVRLTGYRSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLV 396

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 89275805  160 TSLFN----WSNITILMTGsgtIITATYTLYMLSTTQWGGTPSYIKTMPPTHTreHLLMILHILPMTLLVM 226
Cdd:PRK12663 397 QGALDngayILLALMLITS---LITMYSLFRIFFLAYWGDKDGEEVNFKPIPL--YRKLPLSILAVVVIAM 462
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 5-148 1.98e-05

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 44.88  E-value: 1.98e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    5 SMILAAVLLKLGGYGIIRI-MTTLNPLSKTLSYPFMVL----ALWGVIMTgsicLRQTDLKSLIAYSSVSHMGLVI---- 75
Cdd:PRK06521 245 SALMSGVMLKVAIYGILRVvFDLLGAPGWWWGVLVLALgaisAVLGVLYA----LAEHDLKRLLAYSTIENIGIIFvglg 320

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   76 ------------AATLtqtqwAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLL----LARNMqllyPLMSLWWLLA 139
Cdd:PRK06521 321 lamvfiaygmplLAAL-----ALTAALYHLLNHALFKSLLFLGAGAVLHATGTRDMEklggLIRRM----PWTAWAFLIG 391


                 ....*....
gi 89275805  140 SLANMAIPP 148
Cdd:PRK06521 392 CLAISALPP 400
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-174 3.04e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 44.55  E-value: 3.04e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    1 PIAGSMILAAVLLKLGGYGIIRIMTTLNPLSKTLSYPFM-VLALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVIAATL 79
Cdd:PRK07691 240 PIAIAALFGALLTKVGVYAIARTFTLFFSHDTSFTHYLIlILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVA 319

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   80 TQTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLllaRNMQLL---YPLMSLWWLLASLANMAIPPTINLMGEL 156
Cdd:PRK07691 320 MMTESGMIGAIYYLIHDMIVKAALFLLIGIMIKITGTTDL---KKMGGLikrYPVLGWMFFIAALSLAGIPPLSGFYGKF 396

                        170       180
                 ....*....|....*....|..
gi 89275805  157 TIITSLFN----WSNITILMTG 174
Cdd:PRK07691 397 FIVEGTFEagfyVSGIIVLLSS 418
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
54-164 4.72e-05

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 43.66  E-value: 4.72e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   54 LRQTDLKSLIAYSSVSHMGLVIAATLTQTQWAYTGAITLMIAHGLTS----SMLFCLANTNYERTHSRTLL-LARNMQLL 128
Cdd:PRK05777 289 LSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLLAYLFMTlgafGVISLLRRKGGEAESISDFAgLSKRSPLL 368

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 89275805  129 YPLMSLwwLLASLAnmAIPPTINLMGELTIITSLFN 164
Cdd:PRK05777 369 AAVMTI--FMLSLA--GIPPTAGFWGKFYVFEAAVE 400
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
39-148 4.01e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 40.79  E-value: 4.01e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   39 MVLALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRT 118
Cdd:PRK06277 270 IALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAINHVIYKSALFLGAGIVSYRTKTSN 349

                         90       100       110
                 ....*....|....*....|....*....|
gi 89275805  119 LLLARNMQLLYPLMSLWWLLASLANMAIPP 148
Cdd:PRK06277 350 LRKLGGLLPVMPVVAFMVLCAKLAISGVPP 379
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-148 5.21e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 40.85  E-value: 5.21e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    1 PIAGSMILAAVLL-KLGG-YGIIRIMTTLNPLS---KTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVI 75
Cdd:PRK08376 248 PAAPSSISAMLLViKQAGlYALARVLFSIYGPAinlATVGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYML 327

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   76 -----------AATLTQT-QWAYTGAITLMIAHGLTSSMLFCLANTNYERTHSRTLL----LARNMqllyPLMSLWWLLA 139
Cdd:PRK08376 328 lglgvglaalgDPAMASYgEIALAGGIYHIVNHALYKALLFLTAGAVIYETGTRNLNelggLARTM----PKTTIAFLIG 403


                 ....*....
gi 89275805  140 SLANMAIPP 148
Cdd:PRK08376 404 AAAIVGLPP 412
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 23-173 4.85e-03

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 37.45  E-value: 4.85e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805   23 IMTTLNPLSKTLSYPFMvlALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLViaaTLTQTQWAYTGAITLMIAHGLTSSM 102
Cdd:MTH00011 137 ILFFFTSHNILPMMTSM--AAMSALAGGLGGMNQTQLRPLLAYSSIGHMGWM---TMISVFSPSMAILYFMTYIIITTPL 211

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 89275805  103 LFCLANTNYERTHSRTLLLArnmqlLYPLMSLWWLLASLANMAIPPTINLMGELTIITSLFNWSNITILMT 173
Cdd:MTH00011 212 MLLFAYLNAFSTKFNSKISS-----MSQTTSMSLFIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLV 277
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 18-164 9.19e-03

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 36.85  E-value: 9.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 89275805    18 YGIIRI-MTTLNPLSKTLSYPFMVLALWGVIMTGSICLRQTDLKSLIAYSSVSHMGLVIAATLTQTQWAYTGAITLMIAH 96
Cdd:TIGR01770 251 AVFLRLfLYILFGFSEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIY 330

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 89275805    97 GLTS----SMLFCLANTNYERTHSRTLL--LARNMQLLYPLMSLwwLLASLAnmAIPPTINLMGELTIITSLFN 164
Cdd:TIGR01770 331 ALMSlgafGVLSLLRSYKDEWIEYISDFagLFKTNPILAILILI--FMFSLA--GIPPLAGFFGKFYVFFALLK 400
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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