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Conserved domains on  [gi|91694462|gb|ABE41880|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Amazona aestiva aestiva]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 super family cl33352
NADH dehydrogenase subunit 2; Provisional
 1-177 2.15e-84

NADH dehydrogenase subunit 2; Provisional


The actual alignment was detected with superfamily member MTH00112:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 252.05  E-value: 2.15e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462    1 MTPTA*LISTLSILLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462   81 TGQWDIAQLTYPPACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKLPPTTLLLITSHSLSPILLTTMSIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170
                 ....*....|....*..
gi 91694462  161 SIILGGWMGLNQTQTRK 177
Cdd:MTH00112 161 STLIGGWGGLNQTQLRK 177
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-177 2.15e-84

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 252.05  E-value: 2.15e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462    1 MTPTA*LISTLSILLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462   81 TGQWDIAQLTYPPACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKLPPTTLLLITSHSLSPILLTTMSIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170
                 ....*....|....*..
gi 91694462  161 SIILGGWMGLNQTQTRK 177
Cdd:MTH00112 161 STLIGGWGGLNQTQLRK 177
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 10-173 2.01e-15

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 72.84  E-value: 2.01e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462  10 TLSILLGTTITITSNHWTTAWAGLEINTLSIIPMIS-KSHHPRAIEAATKYFLVQAAASTLMLF--------SSTIN--- 77
Cdd:COG1007 108 LLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlag 187

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462  78 -AWHTGQWDIAQLTYPPACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKL----PPTTLLLITSHSLSP- 151
Cdd:COG1007 188 iAAALAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAd 267

                       170       180
                ....*....|....*....|....
gi 91694462 152 --ILLTTMSIMSIILGGWMGLNQT 173
Cdd:COG1007 268 wqLLLAVLAVLSMTVGNLAALAQT 291
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-177 3.42e-11

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 60.02  E-value: 3.42e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462    23 SNHWTTAWAGLEINTLSIIPMI-SKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDIAQL-TYPPAC----- 95
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELsKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462    96 -----LLLTTAIATKLGLAPFHFWFPEVLQGSSLT-TALLLSTIMKLPP-----TTLLLITSHSLSPILLTTMSIMSIIL 164
Cdd:pfam00361  81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160

                         170
                  ....*....|...
gi 91694462   165 GGWMGLNQTQTRK 177
Cdd:pfam00361 161 GSLAALVQTDIKR 173
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 11-173 1.84e-09

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 55.72  E-value: 1.84e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462    11 LSILLGTTITITSNHWTTAWAGLEINTLSI-IPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDIAQL 89
Cdd:TIGR01770 109 LFALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDL 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462    90 -----TYPP-------ACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKL----PPTTLLLITSHSLSP-- 151
Cdd:TIGR01770 189 llflsNGMLnisllllGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIaifaVFLRLFLYILFGFSEaw 268

                         170       180
                  ....*....|....*....|...
gi 91694462   152 -ILLTTMSIMSIILGGWMGLNQT 173
Cdd:TIGR01770 269 qIFLAIIAFLSMLIGNFGALAQK 291
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-177 2.15e-84

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 252.05  E-value: 2.15e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462    1 MTPTA*LISTLSILLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462   81 TGQWDIAQLTYPPACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKLPPTTLLLITSHSLSPILLTTMSIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170
                 ....*....|....*..
gi 91694462  161 SIILGGWMGLNQTQTRK 177
Cdd:MTH00112 161 STLIGGWGGLNQTQLRK 177
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-177 1.62e-68

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 211.70  E-value: 1.62e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462    1 MTPTA*LISTLSILLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWH 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462   81 TGQWDIAQLTYPPACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKLPPTTLLLITSHSLSPILLTTMSIM 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170
                 ....*....|....*..
gi 91694462  161 SIILGGWMGLNQTQTRK 177
Cdd:MTH00070 161 STLIGGWGGLNQTQLRK 177
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-177 3.17e-66

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 205.81  E-value: 3.17e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462    1 MTPTA*LISTLSILLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWH 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462   81 TGQWDIAQLTYPPACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKLPPTTLLLITSHSlSPILLTTMSIM 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170
                 ....*....|....*..
gi 91694462  161 SIILGGWMGLNQTQTRK 177
Cdd:MTH00135 160 STLVGGWGGLNQTQLRK 176
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-177 1.08e-63

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 199.30  E-value: 1.08e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462    1 MTPTA*LISTLSILLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWH 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462   81 TGQWDIAQLTYPPACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKLPPTTLLLITSHSLSPILLTTMSIM 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170
                 ....*....|....*..
gi 91694462  161 SIILGGWMGLNQTQTRK 177
Cdd:MTH00105 161 SILIGGWGGLNQTQLRK 177
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 11-177 1.16e-52

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 171.27  E-value: 1.16e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462   11 LSILLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDIAQLT 90
Cdd:MTH00041  11 TSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPL 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462   91 YPPACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKLPPTTLLLITSHSLSPILLTTMSIMSIILGGWMGL 170
Cdd:MTH00041  91 NTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGL 170


                 ....*..
gi 91694462  171 NQTQTRK 177
Cdd:MTH00041 171 NQTQTRK 177
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-177 2.07e-52

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 170.53  E-value: 2.07e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462    1 MTPTA*LISTLSILLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWH 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462   81 TGQWDIAQLTYPPACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKLPPTTLLLITSHSLSPILLTTMSIM 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170
                 ....*....|....*..
gi 91694462  161 SIILGGWMGLNQTQTRK 177
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRK 177
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-177 1.99e-32

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 118.00  E-value: 1.99e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462    1 MTPTA*LISTLSILLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWH 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462   81 TGqwdiaqLTYPPACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKLPPTTLLlitSHSLSPILLTTMSIM 160
Cdd:MTH00160  82 LM------LFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIIL 152

                        170
                 ....*....|....*..
gi 91694462  161 SIILGGWMGLNQTQTRK 177
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRK 169
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 13-176 4.56e-29

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 109.21  E-value: 4.56e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462   13 ILLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDIAqltyp 92
Cdd:MTH00144  13 MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM----- 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462   93 pacLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKLPPTTLL-LITSHSLSPILLTTMSIMSIILGGWMGLN 171
Cdd:MTH00144  88 ---SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLsNFLDLYWLAYLLCVISVLSALVGSIGGLN 164


                 ....*
gi 91694462  172 QTQTR 176
Cdd:MTH00144 165 QTQVR 169
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-176 2.11e-24

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 96.77  E-value: 2.11e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462    1 MTPTA*LISTlSILLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTInawh 80
Cdd:MTH00011   4 TFPTMFLFSS-TMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM---- 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462   81 tgQWDIAQLTYPPACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKLPPTTLLL-ITSHSLSPIlLTTMSI 159
Cdd:MTH00011  79 --MWSFPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFfFTSHNILPM-MTSMAA 155

                        170
                 ....*....|....*..
gi 91694462  160 MSIILGGWMGLNQTQTR 176
Cdd:MTH00011 156 MSALAGGLGGMNQTQLR 172
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 11-177 6.88e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 90.12  E-value: 6.88e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462   11 LSILLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTgqwdiaqLT 90
Cdd:MTH00197   5 FIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL-------YL 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462   91 YPPACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKLPPttLLLITSHSLSPILLTTMSIMSIILGGWMGL 170
Cdd:MTH00197  78 SLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAP--LLILAFNSSSFMGLLICSVLSSLIGGIGGM 155


                 ....*..
gi 91694462  171 NQTQTRK 177
Cdd:MTH00197 156 NQSNIRQ 162
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-177 1.17e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 75.84  E-value: 1.17e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462   13 ILLGTTITITSNHWTTAWAGLEINTLSIIPMI-SKSHHPRAIEAATKYFLVQAAASTLMLFS-------------STINA 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462   79 WHTGQWDIAQLTYPPACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKLppTTLLLITSHSLSPILLTTMS 158
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKL--GIFSILVSIGLNVNILLIGG 159

                        170
                 ....*....|....*....
gi 91694462  159 IMSIILGGWMGLNQTQTRK 177
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKR 178
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 10-173 2.01e-15

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 72.84  E-value: 2.01e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462  10 TLSILLGTTITITSNHWTTAWAGLEINTLSIIPMIS-KSHHPRAIEAATKYFLVQAAASTLMLF--------SSTIN--- 77
Cdd:COG1007 108 LLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlag 187

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462  78 -AWHTGQWDIAQLTYPPACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKL----PPTTLLLITSHSLSP- 151
Cdd:COG1007 188 iAAALAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAd 267

                       170       180
                ....*....|....*....|....
gi 91694462 152 --ILLTTMSIMSIILGGWMGLNQT 173
Cdd:COG1007 268 wqLLLAVLAVLSMTVGNLAALAQT 291
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-173 1.08e-13

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 67.92  E-value: 1.08e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462   14 LLGTTITITSNHWTTAWAGLEINTLSIIPMIS-KSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDIAQL--- 89
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIaka 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462   90 -----TYPP----ACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKL----PPTTLLLITSHSLSP---IL 153
Cdd:PRK05777 193 ladgsGNSLlllfGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEdwqQV 272

                        170       180
                 ....*....|....*....|
gi 91694462  154 LTTMSIMSIILGGWMGLNQT 173
Cdd:PRK05777 273 LAIIAIASMLVGNLAALSQT 292
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 11-177 5.25e-13

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 65.81  E-value: 5.25e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462   11 LSILLGTTITITSNHWTTAWAGLEINTLSIIPMIS-KSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDI--- 86
Cdd:MTH00199 104 LIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqgi 183

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462   87 -AQLTYPPACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKLPPTTLLLITSHSLSPILLTtmSIMSIILG 165
Cdd:MTH00199 184 nSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYG 261

                        170
                 ....*....|..
gi 91694462  166 GWMGLNQTQTRK 177
Cdd:MTH00199 262 AIGALNQTKIKR 273
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-177 1.25e-11

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 62.18  E-value: 1.25e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462    3 PTA*LISTLSILLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAI---------EAATKYFLVQAAASTLMLFS 73
Cdd:MTH00198 187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462   74 STINAWHTGQ--------------WDIAQLTYPPACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKLppT 139
Cdd:MTH00198 267 CALYFGFTGNegmlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--T 344

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 91694462  140 TLLLITSHSLSPILLTTMSIMSIILGGWMGLNQTQTRK 177
Cdd:MTH00198 345 VYILLTSLVITSKLLLSVAIISLVVGAFGALNQTRIKR 382
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-177 3.42e-11

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 60.02  E-value: 3.42e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462    23 SNHWTTAWAGLEINTLSIIPMI-SKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDIAQL-TYPPAC----- 95
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELsKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462    96 -----LLLTTAIATKLGLAPFHFWFPEVLQGSSLT-TALLLSTIMKLPP-----TTLLLITSHSLSPILLTTMSIMSIIL 164
Cdd:pfam00361  81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160

                         170
                  ....*....|...
gi 91694462   165 GGWMGLNQTQTRK 177
Cdd:pfam00361 161 GSLAALVQTDIKR 173
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 11-173 1.84e-09

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 55.72  E-value: 1.84e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462    11 LSILLGTTITITSNHWTTAWAGLEINTLSI-IPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDIAQL 89
Cdd:TIGR01770 109 LFALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDL 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462    90 -----TYPP-------ACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKL----PPTTLLLITSHSLSP-- 151
Cdd:TIGR01770 189 llflsNGMLnisllllGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIaifaVFLRLFLYILFGFSEaw 268

                         170       180
                  ....*....|....*....|...
gi 91694462   152 -ILLTTMSIMSIILGGWMGLNQT 173
Cdd:TIGR01770 269 qIFLAIIAFLSMLIGNFGALAQK 291
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 38-173 9.20e-08

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 50.46  E-value: 9.20e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462  38 LSIIPM---ISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQW-----DIAQLTYPPA-----CLLLTTAIAT 104
Cdd:COG1008 142 LMLIPMyflIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaELAAAPLPLTaqlllFLAFFIAFAV 221

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462 105 KLGLAPFHFWFPEVLQGSSLTTALLLSTIMK-----------LPpttLLLITSHSLSPILLtTMSIMSIILGGWMGLNQT 173
Cdd:COG1008 222 KVPMFPFHTWLPDAHVEAPTAGSVLLAGVLLkmggygllrfaLP---LFPEASAYFAPLLA-ALGVIGIIYGALVALAQT 297
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 14-173 1.50e-07

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 50.15  E-value: 1.50e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462  14 LLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDIAQL---- 89
Cdd:COG0651 117 LAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLaarl 196

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462  90 -TYPP-----ACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIM-KLPP-------TTLLLITSHSLSPILLT 155
Cdd:COG0651 197 aELDPglllaAFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtKVGVyailrvlTLLFGADPALFLGTLLL 276

                       170
                ....*....|....*...
gi 91694462 156 TMSIMSIILGGWMGLNQT 173
Cdd:COG0651 277 VLGLLTMLVGALGALAQR 294
ndhB CHL00049
NADH dehydrogenase subunit 2
 1-173 2.98e-06

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 46.15  E-value: 2.98e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462    1 MTPTA*LISTLSILLGTTITITSNHWTTAWAGLEINTLSIIPMISKSHHP-RAIEAATKYFLVQAAASTLML--FSST-- 75
Cdd:CHL00049 108 MAITEFLLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFSWLyg 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462   76 INAWHTGQWDIA------QLTYPPACLL----LTTAIATKLGLAPFHFWFPEVLQGSSLTTALLLSTIMKLP----PTTL 141
Cdd:CHL00049 188 LSGGEIELQEIVnglintQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAasalATRI 267

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 91694462  142 LLITSHSLSP---ILLTTMSIMSIILGGWMGLNQT 173
Cdd:CHL00049 268 FDIPFYFSSNewhLLLEILAILSMILGNLIAITQT 302
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-173 9.11e-06

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 44.66  E-value: 9.11e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462   50 PRAIEAATKYFLVQAAASTLMLFSST----INAWHTGQWDIAQL----TYPPACLLLTTAIAT---KLGLAPFHFWFPEV 118
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYGSSllygLSGGSTQLSAIALAlitsPSLGLALALVFVIAGiafKISAVPFHQWTPDV 236

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 91694462  119 LQGSSLTTALLLSTIMKLPPTTL---LLITSHSLSP----ILLTTMSIMSIILGGWMGLNQT 173
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAGFALairLLVTAFPSFDeqwkLLFTALAILSMVLGNVVALAQT 298
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-173 2.36e-04

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 40.69  E-value: 2.36e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462    50 PRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQW----DIAQLTYPPAC-----LLLTTAIATKLGLAPFHFWFPEV-L 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 91694462   120 QGSSLTTALLLSTIMKLPPTTLLLI-------TSHSLSPILLtTMSIMSIILGGWMGLNQT 173
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLRFnlplfpdASLYFAPVLA-ALGVIAIIYGALIALAQT 291
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 38-173 7.23e-04

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 39.03  E-value: 7.23e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462   38 LSIIPM---ISKSHHPRAIEAATKYFLVQAAASTLMLFS----STINAWHTGQWDIAQLTYPPACLLLTT--------AI 102
Cdd:PRK05846 142 AMLIPMyflIGVWGGKNRIYAATKFFLYTLLGSLLMLVAiiylVVVYYNATGTFDIADLLNLPLPPGVQYwlflaffiAF 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462  103 ATKLGLAPFHFWFPEVLQ-----GSSLTTALLLST------IMKLPpttLLLITSHSLSPILLtTMSIMSIILGGWMGLN 171
Cdd:PRK05846 222 AVKMPMFPLHTWLPDAHVqaptaGSVLLAGILLKMgaygllRFSLP---LFPDASHEFAPIII-TLGVIAIIYGALVALA 297


                 ..
gi 91694462  172 QT 173
Cdd:PRK05846 298 QT 299
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-176 8.63e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 39.09  E-value: 8.63e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462   33 LEINTLSIIPMISKSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDIAQLT--YPPACLLLT------TAIAT 104
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAgaLAENPTVVTafgfvlLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462  105 KLGLAPFHFWFPEVLQG-SSLTTALLLSTIMKLPPTTLLLITSH----------SLSPILLTTMsIMSIILGGWMGLNQT 173
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIRIYFTvfggdfrfalGLGWLLAVLA-LLSMLVGSLAALGQD 293


                 ...
gi 91694462  174 QTR 176
Cdd:PRK08375 294 DVK 296
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 20-144 2.08e-03

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 37.99  E-value: 2.08e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462   20 TITSNHWTTAWAGLEINTLSIIPMISKSHHPRAIEAATKYF---------------LVQAAASTLM------LFSSTINA 78
Cdd:PRK06458 124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIiicsvgvafalfgtiLVYANAATVMgdgemaILWTELLK 203

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462   79 wHTGQWDIAQLTYPPACLLLttAIATKLGLAPFHFWFPE-----------VLQGSSLTTAL---------LLSTIMKLPP 138
Cdd:PRK06458 204 -HASLLDPTLMKLAFVFLLI--GFGTKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALyavlryyilIDAAIGSDFP 280


                 ....*.
gi 91694462  139 TTLLLI 144
Cdd:PRK06458 281 GRLLLI 286
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-133 5.62e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 36.61  E-value: 5.62e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462   33 LEINTLSIIPMIS-KSHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDIAQLTY----------PPACLLLTTA 101
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGIALLYGQYGTLNMAYLAVkmsenptvvaKIALALFIAG 229

                         90       100       110
                 ....*....|....*....|....*....|....
gi 91694462  102 IATKLGLAPFHFWFPEVLQG--SSLTTALLLSTI 133
Cdd:PRK08376 230 LAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQ 263
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
14-129 7.48e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 36.21  E-value: 7.48e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 91694462   14 LLGTTITITSNHWTT---AWAGLEI---NTLSIIPmisksHHPRAIEAATKYFLVQAAASTLMLFSSTINAWHTGQWDIA 87
Cdd:PRK08168 110 LAAVHLLVLSDHLLVliaAWAAISLalhRLLCFYP-----DRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSLSLS 184

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 91694462   88 QL-----TYPP------ACLLLTTAIATKLGLAPFHFWFPEVLQGSSLTTALL 129
Cdd:PRK08168 185 ALwahlaAQGAspslqaAALLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALL 237
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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