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Conserved domains on  [gi|118776163|gb|ABL07284|]
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NADH dehydrogenase subunit 1, partial (mitochondrion) [Plecotus sardus]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009566)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 1-300 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177166  Cd Length: 318  Bit Score: 513.40  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163   1 MYFMNLLTTIIPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADAVKLFTKEPLQPLTSSLILFIIAPTLALT 80
Cdd:MTH00104   1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163  81 LALMMWIPLPMPYSLVNMNLAYI*YMALSSLAVYTILWSGWASNSKYALIRCLRAVAQTISYEVTLAIIILSILLLNGSF 160
Cdd:MTH00104  81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163 161 TLSTLATTQEYVWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNVFTTT 240
Cdd:MTH00104 161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163 241 LFMGAYKTPMLPEMFTISLTIKVLLLTTFFLWIRASYPRFRYDQLMHLLWKN*LPLTLVM 300
Cdd:MTH00104 241 LFLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLAL 300
 
Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 1-300 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 513.40  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163   1 MYFMNLLTTIIPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADAVKLFTKEPLQPLTSSLILFIIAPTLALT 80
Cdd:MTH00104   1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163  81 LALMMWIPLPMPYSLVNMNLAYI*YMALSSLAVYTILWSGWASNSKYALIRCLRAVAQTISYEVTLAIIILSILLLNGSF 160
Cdd:MTH00104  81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163 161 TLSTLATTQEYVWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNVFTTT 240
Cdd:MTH00104 161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163 241 LFMGAYKTPMLPEMFTISLTIKVLLLTTFFLWIRASYPRFRYDQLMHLLWKN*LPLTLVM 300
Cdd:MTH00104 241 LFLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLAL 300
NADHdh pfam00146
NADH dehydrogenase;
6-300 1.27e-112

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 327.51  E-value: 1.27e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163    6 LLTTIIPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADAVKLFTKEPLQPLTSSLILFIIAPTLALTLALMM 85
Cdd:pfam00146   2 ILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163   86 WIPLPMPYSLV--NMNLAYI*YMALSSLAVYTILWSGWASNSKYALIRCLRAVAQTISYEVTLAIIILSILLLNGSFTLS 163
Cdd:pfam00146  82 FAVIPFGPGLVlaDLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163  164 TLATTQEYVWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNVFTTTLFM 243
Cdd:pfam00146 162 EIVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFL 241

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 118776163  244 GAYKTPMLPEMFtISLTIKVLLLTTFFLWIRASYPRFRYDQLMHLLWKN*LPLTLVM 300
Cdd:pfam00146 242 GGWLGPFPLPGL-LWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLAN 297
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 10-299 4.33e-102

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 301.66  E-value: 4.33e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163  10 IIPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADAVKLFTKEPLQPLTSSLILFIIAPTLALTLALMMWIPL 89
Cdd:COG1005   19 LVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFAVI 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163  90 PM--PYSLVNMNLAYI*YMALSSLAVYTILWSGWASNSKYALIRCLRAVAQTISYEVTLAIIILSILLLNGSFTLSTLAT 167
Cdd:COG1005   99 PFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLNLSEIVE 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163 168 TQE-YVWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNVFTTTLFMGAY 246
Cdd:COG1005  179 AQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLFLGGW 258

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 118776163 247 KTPMLPEMFT-----ISLTIKVLLLTTFFLWIRASYPRFRYDQLMHLLWKN*LPLTLV 299
Cdd:COG1005  259 LGPFPILPLGglpgiLWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
 
Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 1-300 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 513.40  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163   1 MYFMNLLTTIIPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADAVKLFTKEPLQPLTSSLILFIIAPTLALT 80
Cdd:MTH00104   1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163  81 LALMMWIPLPMPYSLVNMNLAYI*YMALSSLAVYTILWSGWASNSKYALIRCLRAVAQTISYEVTLAIIILSILLLNGSF 160
Cdd:MTH00104  81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163 161 TLSTLATTQEYVWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNVFTTT 240
Cdd:MTH00104 161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163 241 LFMGAYKTPMLPEMFTISLTIKVLLLTTFFLWIRASYPRFRYDQLMHLLWKN*LPLTLVM 300
Cdd:MTH00104 241 LFLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLAL 300
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 1-300 3.51e-178

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 494.41  E-value: 3.51e-178
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163   1 MYFMNLLTTIIPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADAVKLFTKEPLQPLTSSLILFIIAPTLALT 80
Cdd:MTH00111   6 LNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILALL 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163  81 LALMMWIPLPMPYSLVNMNLAYI*YMALSSLAVYTILWSGWASNSKYALIRCLRAVAQTISYEVTLAIIILSILLLNGSF 160
Cdd:MTH00111  86 LALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSGGY 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163 161 TLSTLATTQEYVWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNVFTTT 240
Cdd:MTH00111 166 TLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTLTTI 245

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163 241 LFMGAYKTPMLPEMFTISLTIKVLLLTTFFLWIRASYPRFRYDQLMHLLWKN*LPLTLVM 300
Cdd:MTH00111 246 LFLNPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLAL 305
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 1-300 3.63e-173

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 481.81  E-value: 3.63e-173
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163   1 MYFMNLLTTIIPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADAVKLFTKEPLQPLTSSLILFIIAPTLALT 80
Cdd:MTH00071   6 SLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMALT 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163  81 LALMMWIPLPMPYSLVNMNLAYI*YMALSSLAVYTILWSGWASNSKYALIRCLRAVAQTISYEVTLAIIILSILLLNGSF 160
Cdd:MTH00071  86 LALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLTGGF 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163 161 TLSTLATTQEYVWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNVFTTT 240
Cdd:MTH00071 166 SLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLSTI 245

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163 241 LFMGAYKTPMLPEMFTISLTIKVLLLTTFFLWIRASYPRFRYDQLMHLLWKN*LPLTLVM 300
Cdd:MTH00071 246 LFLGSTYNHLQPELSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAM 305
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 1-300 1.63e-170

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 475.25  E-value: 1.63e-170
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163   1 MYFMNLLTTIIPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADAVKLFTKEPLQPLTSSLILFIIAPTLALT 80
Cdd:MTH00134   7 THIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLALT 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163  81 LALMMWIPLPMPYSLVNMNLAYI*YMALSSLAVYTILWSGWASNSKYALIRCLRAVAQTISYEVTLAIIILSILLLNGSF 160
Cdd:MTH00134  87 LALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGF 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163 161 TLSTLATTQEYVWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNVFTTT 240
Cdd:MTH00134 167 TLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAI 246

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163 241 LFMGAYKTPMLPEMFTISLTIKVLLLTTFFLWIRASYPRFRYDQLMHLLWKN*LPLTLVM 300
Cdd:MTH00134 247 LFLGASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLAL 306
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 1-298 4.28e-138

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 392.80  E-value: 4.28e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163   1 MYFMNLLTTIIPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADAVKLFTKEPLQPLTSSLILFIIAPTLALT 80
Cdd:MTH00040   5 LFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFLF 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163  81 LALMMWIPLPMPYSLVNMNLAYI*YMALSSLAVYTILWSGWASNSKYALIRCLRAVAQTISYEVTLAIIILSILLLNGSF 160
Cdd:MTH00040  85 LALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSGSF 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163 161 TLSTLATTQEYVWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNVFTTT 240
Cdd:MTH00040 165 SLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLLSVI 244

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 118776163 241 LFMGAykTPMLPEMF---TISLTIKVLLLTTFFLWIRASYPRFRYDQLMHLLWKN*LPLTL 298
Cdd:MTH00040 245 LFLGG--GSPFNEIFpinIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSI 303
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 2-298 7.97e-138

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 391.97  E-value: 7.97e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163   2 YFMNLLTTIIPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADAVKLFTKEPLQPLTSSLILFIIAPTLALTL 81
Cdd:MTH00218   4 SLINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163  82 ALMMWIPLPMPYSLVNMNLAYI*YMALSSLAVYTILWSGWASNSKYALIRCLRAVAQTISYEVTLAIIILSILLLNGSFT 161
Cdd:MTH00218  84 ALLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGGFS 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163 162 LSTLATTQEYVWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNVFTTTL 241
Cdd:MTH00218 164 LEGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLSVIL 243

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 118776163 242 FMGAYKTpmlpemfTISLTIKVLLLTTFFLWIRASYPRFRYDQLMHLLWKN*LPLTL 298
Cdd:MTH00218 244 FLGTSLT-------TINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSL 293
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 1-300 1.39e-116

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 337.61  E-value: 1.39e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163   1 MYFMNLLTTIIPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADAVKLFTKEPLQPLTSSLILFIIAPTLALT 80
Cdd:MTH00143   2 VSLLSSVFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLI 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163  81 LALMMWIPLPMPYSLVNMNLAYI*YMALSSLAVYTILWSGWASNSKYALIRCLRAVAQTISYEVTLAIIILSILLLNGSF 160
Cdd:MTH00143  82 LALLLWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSF 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163 161 TLSTLATTQEYVWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNVFTTT 240
Cdd:MTH00143 162 SFIEISESQFSVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVV 241

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163 241 LFMGAykTPMLPEMFTISLTIKVLLLTTFFLWIRASYPRFRYDQLMHLLWKN*LPLTLVM 300
Cdd:MTH00143 242 LFFGG--SSVLFLLGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSI 299
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 7-300 6.99e-116

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 335.94  E-value: 6.99e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163   7 LTTIIPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADAVKLFTKEPLQPLTSSLILFIIAPTLALTLALMMW 86
Cdd:MTH00195   9 LIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALALILW 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163  87 IPLPMPYSLVNMNLAYI*YMALSSLAVYTILWSGWASNSKYALIRCLRAVAQTISYEVTLAIIILSILLLNGSFTLSTLA 166
Cdd:MTH00195  89 VPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSFDFTIMV 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163 167 TTQEYVWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNVFTTTLFMGAY 246
Cdd:MTH00195 169 ISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTTILFLGGG 248

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 118776163 247 KTPMlpemftisLTIKVLLLTTFFLWIRASYPRFRYDQLMHLLWKN*LPLTLVM 300
Cdd:MTH00195 249 GTII--------VALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSL 294
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 1-300 2.79e-114

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 331.73  E-value: 2.79e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163   1 MYFMNLLTTIIPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADAVKLFTKEPLQPLTSSLILFIIAPTLALT 80
Cdd:MTH00193   3 MMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163  81 LALMMWIPLPMPYSLVNMNLAYI*YMALSSLAVYTILWSGWASNSKYALIRCLRAVAQTISYEVTLAIIILSILLLNGSF 160
Cdd:MTH00193  83 LSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSF 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163 161 TLSTLATTQEYVWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNVFTTT 240
Cdd:MTH00193 163 NLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVL 242

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163 241 LFMGAYktpmlpeMFTISLTIKVLLLTTFFLWIRASYPRFRYDQLMHLLWKN*LPLTLVM 300
Cdd:MTH00193 243 MFLGGD-------LLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNY 295
NADHdh pfam00146
NADH dehydrogenase;
6-300 1.27e-112

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 327.51  E-value: 1.27e-112
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163    6 LLTTIIPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADAVKLFTKEPLQPLTSSLILFIIAPTLALTLALMM 85
Cdd:pfam00146   2 ILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163   86 WIPLPMPYSLV--NMNLAYI*YMALSSLAVYTILWSGWASNSKYALIRCLRAVAQTISYEVTLAIIILSILLLNGSFTLS 163
Cdd:pfam00146  82 FAVIPFGPGLVlaDLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163  164 TLATTQEYVWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNVFTTTLFM 243
Cdd:pfam00146 162 EIVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFL 241

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 118776163  244 GAYKTPMLPEMFtISLTIKVLLLTTFFLWIRASYPRFRYDQLMHLLWKN*LPLTLVM 300
Cdd:pfam00146 242 GGWLGPFPLPGL-LWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLAN 297
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 1-298 2.27e-106

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 311.97  E-value: 2.27e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163   1 MYFMNLLTTIIPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADAVKLFTKEPLQPLTSSLILFIIAPTLALT 80
Cdd:MTH00225   2 SFLLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLI 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163  81 LALMMWIPLPMPYSLVNMNLAYI*YMALSSLAVYTILWSGWASNSKYALIRCLRAVAQTISYEVTLAIIILSILLLNGSF 160
Cdd:MTH00225  82 LSLILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTY 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163 161 TLSTLATTQEYVWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNVFTTT 240
Cdd:MTH00225 162 NLFDFSYNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSI 241

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 118776163 241 LFMGAyktpmLPEMFTISLTIKVLLLTTFFLWIRASYPRFRYDQLMHLLWKN*LPLTL 298
Cdd:MTH00225 242 LFFGG-----FFVTIDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSL 294
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 1-298 8.38e-105

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 308.58  E-value: 8.38e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163   1 MYFMNLLTTIIPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADAVKLFTKEPLQPLTSSLILFIIAPTLALT 80
Cdd:MTH00054   3 IIIIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLT 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163  81 LALMMW--IPLPMPYSLVNMNLAYI*YMALSSLAVYTILWSGWASNSKYALIRCLRAVAQTISYEVTLAIIILSILLLNG 158
Cdd:MTH00054  83 LAFIAWgvIPYGEGVVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163 159 SFTLSTLATTQEYVWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNVFT 238
Cdd:MTH00054 163 SLNLTEIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFG 242

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 118776163 239 TTLFMGAYKTPMLPEMFTIS---LTIKVLLLTTFFLWIRASYPRFRYDQLMHLLWKN*LPLTL 298
Cdd:MTH00054 243 VILFLGGWLVISGPTSYFSNfvwFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSL 305
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 10-299 4.33e-102

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 301.66  E-value: 4.33e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163  10 IIPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADAVKLFTKEPLQPLTSSLILFIIAPTLALTLALMMWIPL 89
Cdd:COG1005   19 LVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFAVI 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163  90 PM--PYSLVNMNLAYI*YMALSSLAVYTILWSGWASNSKYALIRCLRAVAQTISYEVTLAIIILSILLLNGSFTLSTLAT 167
Cdd:COG1005   99 PFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLNLSEIVE 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163 168 TQE-YVWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNVFTTTLFMGAY 246
Cdd:COG1005  179 AQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLFLGGW 258

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 118776163 247 KTPMLPEMFT-----ISLTIKVLLLTTFFLWIRASYPRFRYDQLMHLLWKN*LPLTLV 299
Cdd:COG1005  259 LGPFPILPLGglpgiLWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 2-298 1.76e-100

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 297.80  E-value: 1.76e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163   2 YFMNLLTTIIPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADAVKLFTKEPLQPLTSSLILFIIAPTLALTL 81
Cdd:MTH00216   8 YLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLSFTL 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163  82 ALMMW--IPLPMPYSLVNMNLAYI*YMALSSLAVYTILWSGWASNSKYALIRCLRAVAQTISYEVTLAIIILSILLLNGS 159
Cdd:MTH00216  88 ALIVWgvIPYERGVLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLCVGS 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163 160 FTLSTLATTQ-EYVWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNVFT 238
Cdd:MTH00216 168 LSITEIVLAQnNGIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMSCLT 247

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 118776163 239 TTLFMGAYKTP-MLPEMFTISLTIKVLLLTTFFLWIRASYPRFRYDQLMHLLWKN*LPLTL 298
Cdd:MTH00216 248 TILFLGGWLSPiKYFKGGAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSL 308
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
10-300 1.30e-97

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 290.17  E-value: 1.30e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163  10 IIPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADAVKLFTKEPLQPLTSSLILFIIAPTLALTLALMMWIPL 89
Cdd:PRK06076  20 LVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFIPAFLAWAVI 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163  90 PM--PYSLVNMNLAYI*YMALSSLAVYTILWSGWASNSKYALIRCLRAVAQTISYEVTLAIIILSILLLNGSFTLSTLAT 167
Cdd:PRK06076 100 PFgpELVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLNLSDIVE 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163 168 TQEYVWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNVFTTTLFMGAYK 247
Cdd:PRK06076 180 AQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSALITTLFLGGWL 259

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 118776163 248 TPMLPEMFT---ISLTIKVLLLTTFFLWIRASYPRFRYDQLMHLLWKN*LPLTLVM 300
Cdd:PRK06076 260 PPFPLGGGIpgaIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVN 315
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 2-298 1.53e-88

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 266.65  E-value: 1.53e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163   2 YFMNLLTTIIPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADAVKLFTKEPLQPLTSSLILFIIAPTLALTL 81
Cdd:MTH00010   5 FFISILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLIL 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163  82 ALMMWIPLPMPYSLVNMNLAYI*YMALSSLAVYTILWSGWASNSKYALIRCLRAVAQTISYEVTLAIIILSILLLNGSFT 161
Cdd:MTH00010  85 ALLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFS 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163 162 LSTLATTQeYVWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNVFTTTL 241
Cdd:MTH00010 165 FSKIIMSQ-YSWILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVF 243

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 118776163 242 FMGAYKTPMLPEMFTISLTIKVLLLttfFLWIRASYPRFRYDQLMHLLWKN*LPLTL 298
Cdd:MTH00010 244 FTSFIPSIFISDLMLILKTVFLAFL---FIWIRATFPRMRYDRLMNLTWKSFLPMSL 297
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 4-298 3.15e-86

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 261.88  E-value: 3.15e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163   4 MNLLTTIIPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADAVKLFTKEPLQPLTSSLILFIIAPTLALTLAL 83
Cdd:MTH00029  11 IKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLAI 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163  84 MMWIPLPMPYS--LVNMNLAYI*YMALSSLAVYTILWSGWASNSKYALIRCLRAVAQTISYEVTLAIIILSILLLNGSFT 161
Cdd:MTH00029  91 LAWAIVTMDQGvfLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSLN 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163 162 LSTLATTQEYVWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNVFTTTL 241
Cdd:MTH00029 171 ISEIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCMMTIF 250

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 118776163 242 FMGAYKTPM-----LPEMFTISLTI-----------KVLLLTTFFLWIRASYPRFRYDQLMHLLWKN*LPLTL 298
Cdd:MTH00029 251 FLGGWLSPLdgiptPPEAFSIFEQIasskssfwfftKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLSL 323
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 5-300 3.70e-63

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 200.90  E-value: 3.70e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163   5 NLLTTIIPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADAVKLFTKEPLQPLTSSLILFIIAPTLALTLALM 84
Cdd:MTH00090   1 MLLLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163  85 MWIPLPMPYSLVNMNLAYI*YMALSSLAVYTILWSGWASNSKYALIRCLRAVAQTISYEVTLAIIILSILLLNGSFTLSt 164
Cdd:MTH00090  81 EWFVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFV- 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163 165 lattQEYVWLIIPSWplaMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNVFTTTLFMG 244
Cdd:MTH00090 160 ----SSFSLSLFVIY---LPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFK 232

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 118776163 245 ayktpMLPEMFTISLTIkvlllttfFLWIRASYPRFRYDQLMHLLWKN*LPLTLVM 300
Cdd:MTH00090 233 -----FSFLMLFLIFSL--------LIFIRSSYPRFRYDMMMSMFWFKFLPLSLIF 275
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 2-300 5.65e-51

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 169.72  E-value: 5.65e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163   2 YFMNLLTTIIPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADAVKLFTKEPLQPLTSSLILFIIAPTLALTL 81
Cdd:MTH00058   3 GLVSGLEGLLIILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163  82 ALMMWIPLPMPYSLVNMNLAYI*YMALSSLAVYTILWSGWASNSKYALIRCLRAVAQTISYEVTLAIIILSILLLNGSFT 161
Cdd:MTH00058  83 VVFYCFIYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYS 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163 162 LSTLATTQEYVWLIIPswPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMMNVFTTTL 241
Cdd:MTH00058 163 LVDFYYSGWLSVLLFP--LIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVL 240

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 118776163 242 FMGAyktpmlpeMFTISLTIKVLLlttFFLWIRASYPRFRYDQLMHLLWKN*LPLTLVM 300
Cdd:MTH00058 241 FFGG--------GFVSIMLLFHLL---FFMWARATLPRVRYDYFVNFFWEYCLVLLILS 288
ndhA CHL00032
NADH dehydrogenase subunit 1
 3-298 8.05e-48

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 163.58  E-value: 8.05e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163   3 FMNLLTTIIPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPCGLLQPIADAVKLFTKEPLQPLTSSLILFIIAPTLALTLA 82
Cdd:CHL00032  30 LVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAVISI 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163  83 LMMWIPLPMPYSLV--NMNLAYI*YMALSSLAVYTILWSGWASNSKYALIRCLRAVAQTISYEVTLAIIILSILLLNGSf 160
Cdd:CHL00032 110 LLSYLVIPFGYHLVlaDLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNS- 188

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163 161 tLSTLATTQEYVWLIIPSWPL------AMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMM 234
Cdd:CHL00032 189 -LSTVDIVEAQSKYGFWGWNLwrqpigFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVS 267

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163 235 NVFTTTLFMGAYKTPM----LPEMFTISLTIKV----------LLLTTFFLWI----RASYPRFRYDQLMHLLWKN*LPL 296
Cdd:CHL00032 268 SLFVTVLYLGGWNLSIpyifIPELFEINKTGGVfgttigifitLAKTYLFLFIsittRWTLPRLRMDQLLNLGWKFLLPI 347


                 ..
gi 118776163 297 TL 298
Cdd:CHL00032 348 SL 349
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
3-291 1.90e-28

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 111.04  E-value: 1.90e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163   3 FMNLLTTIIPVLLAVAFLTLLE---RKVLGYMQLRKGPnivgpcGLLQPIADAVKLFTKEPLQPLTSSLIlFIIAPTLAL 79
Cdd:COG0650    1 MMLILLALLQLLLALLLAPLLLgiiRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASWL-FRAAPYVAL 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163  80 --TLALMMWIPLPMPYSLVNMNLAYI*YMALSSLAVYTILWSGWASNSKYALIRCLRAVAQTISYEVTLAIIILSILLLN 157
Cdd:COG0650   74 aaMLLAALLVPVLTTGPPLSFSGDLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLA 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 118776163 158 GSFTLSTLATTQE---YVWLIIPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANIIMM 234
Cdd:COG0650  154 GSTSLSDIVAYQAahgPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVL 233

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 118776163 235 NVFTTTLFMGaYKTPMLPEMFTISLTIKVLLLTTFFLWIRASYPRFRYDQLMHLLWK 291
Cdd:COG0650  234 LSLFVNLFLP-WGIALTLLLALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWT 289
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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