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Conserved domains on  [gi|125632041|gb|ABN47421|]
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NADH dehydrogenase subunit 1, partial (mitochondrion) [Pseudagrion nubicum]

Protein Classification

complex I subunit 1 family protein( domain architecture ID 103)

complex I subunit 1 family protein similar to NADH dehydrogenase subunit 1, which is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

EC:  7.1.1.-
Gene Ontology:  GO:0016655|GO:0016020
PubMed:  23417064|24059520
SCOP:  4005664

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK06076 super family cl00469
NADH-quinone oxidoreductase subunit NuoH;
17-100 1.18e-41

NADH-quinone oxidoreductase subunit NuoH;


The actual alignment was detected with superfamily member MTH00193:

Pssm-ID: 469782  Cd Length: 306  Bit Score: 138.36  E-value: 1.18e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125632041  17 VICVLVGVAFLTLLERKVLGYMQIRKGPNKVGYCGILQPFSDAVKLFNKEQTFPMSANYLPYYFSPIFSLFISLLCWMVM 96
Cdd:MTH00193  12 IICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLSLLIWLIY 91


                 ....
gi 125632041  97 PFYF 100
Cdd:MTH00193  92 PYLF 95
 
Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 17-100 1.18e-41

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 138.36  E-value: 1.18e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125632041  17 VICVLVGVAFLTLLERKVLGYMQIRKGPNKVGYCGILQPFSDAVKLFNKEQTFPMSANYLPYYFSPIFSLFISLLCWMVM 96
Cdd:MTH00193  12 IICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLSLLIWLIY 91


                 ....
gi 125632041  97 PFYF 100
Cdd:MTH00193  92 PYLF 95
NADHdh pfam00146
NADH dehydrogenase;
17-98 3.70e-26

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 97.93  E-value: 3.70e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125632041   17 VICVLVGVAFLTLLERKVLGYMQIRKGPNKVGYCGILQPFSDAVKLFNKEQTFPMSANYLPYYFSPIFSLFISLLCWMVM 96
Cdd:pfam00146   6 LVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAFAVI 85


                  ..
gi 125632041   97 PF 98
Cdd:pfam00146  86 PF 87
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 17-98 9.72e-23

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 89.42  E-value: 9.72e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125632041  17 VICVLVGVAFLTLLERKVLGYMQIRKGPNKVGYCGILQPFSDAVKLFNKEQTFPMSANYLPYYFSPIFSLFISLLCWMVM 96
Cdd:COG1005   19 LVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFAVI 98


                 ..
gi 125632041  97 PF 98
Cdd:COG1005   99 PF 100
 
Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 17-100 1.18e-41

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 138.36  E-value: 1.18e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125632041  17 VICVLVGVAFLTLLERKVLGYMQIRKGPNKVGYCGILQPFSDAVKLFNKEQTFPMSANYLPYYFSPIFSLFISLLCWMVM 96
Cdd:MTH00193  12 IICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLSLLIWLIY 91


                 ....
gi 125632041  97 PFYF 100
Cdd:MTH00193  92 PYLF 95
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 17-100 1.24e-35

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 122.84  E-value: 1.24e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125632041  17 VICVLVGVAFLTLLERKVLGYMQIRKGPNKVGYCGILQPFSDAVKLFNKEQTFPMSANYLPYYFSPIFSLFISLLCWMVM 96
Cdd:MTH00225  11 LICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLILSLILWSLY 90


                 ....
gi 125632041  97 PFYF 100
Cdd:MTH00225  91 PSMF 94
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 18-100 5.71e-33

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 115.74  E-value: 5.71e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125632041  18 ICVLVGVAFLTLLERKVLGYMQIRKGPNKVGYCGILQPFSDAVKLFNKEQTFPMSANYLPYYFSPIFSLFISLLCWMVMP 97
Cdd:MTH00143  12 LCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALLLWQLYP 91


                 ...
gi 125632041  98 FYF 100
Cdd:MTH00143  92 SYF 94
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 17-100 6.35e-29

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 105.21  E-value: 6.35e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125632041  17 VICVLVGVAFLTLLERKVLGYMQIRKGPNKVGYCGILQPFSDAVKLFNKEQTFPMSANYLPYYFSPIFSLFISLLCWMVM 96
Cdd:MTH00195  12 IVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALALILWVPI 91


                 ....
gi 125632041  97 PFYF 100
Cdd:MTH00195  92 PSPF 95
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 17-98 1.52e-28

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 104.22  E-value: 1.52e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125632041  17 VICVLVGVAFLTLLERKVLGYMQIRKGPNKVGYCGILQPFSDAVKLFNKEQTFPMSANYLPYYFSPIFSLFISLLCWMVM 96
Cdd:MTH00218  12 ILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTLALLLWMPL 91


                 ..
gi 125632041  97 PF 98
Cdd:MTH00218  92 PL 93
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 17-98 5.84e-28

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 103.05  E-value: 5.84e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125632041  17 VICVLVGVAFLTLLERKVLGYMQIRKGPNKVGYCGILQPFSDAVKLFNKEQTFPMSANYLPYYFSPIFSLFISLLCW--M 94
Cdd:MTH00111  15 IIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILALLLALTIWtpL 94


                 ....
gi 125632041  95 VMPF 98
Cdd:MTH00111  95 PMPF 98
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 17-97 1.37e-27

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 102.01  E-value: 1.37e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125632041  17 VICVLVGVAFLTLLERKVLGYMQIRKGPNKVGYCGILQPFSDAVKLFNKEQTFPMSANYLPYYFSPIFSLFISLLCWMVM 96
Cdd:MTH00104  10 IIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTLALTMWIPL 89


                 .
gi 125632041  97 P 97
Cdd:MTH00104  90 P 90
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 17-97 1.60e-27

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 101.98  E-value: 1.60e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125632041  17 VICVLVGVAFLTLLERKVLGYMQIRKGPNKVGYCGILQPFSDAVKLFNKEQTFPMSANYLPYYFSPIFSLFISLLCWMVM 96
Cdd:MTH00040  14 IVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFLFLALLLWSLI 93


                 .
gi 125632041  97 P 97
Cdd:MTH00040  94 P 94
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 17-98 6.66e-27

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 100.24  E-value: 6.66e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125632041  17 VICVLVGVAFLTLLERKVLGYMQIRKGPNKVGYCGILQPFSDAVKLFNKEQTFPMSANYLPYYFSPIFSLFISLLCWMVM 96
Cdd:MTH00010  13 YVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLILALLLWSLY 92


                 ..
gi 125632041  97 PF 98
Cdd:MTH00010  93 PH 94
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 17-97 1.85e-26

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 98.91  E-value: 1.85e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125632041  17 VICVLVGVAFLTLLERKVLGYMQIRKGPNKVGYCGILQPFSDAVKLFNKEQTFPMSANYLPYYFSPIFSLFISLLCWMVM 96
Cdd:MTH00134  16 IVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLALTLALTLWAPM 95


                 .
gi 125632041  97 P 97
Cdd:MTH00134  96 P 96
NADHdh pfam00146
NADH dehydrogenase;
17-98 3.70e-26

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 97.93  E-value: 3.70e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125632041   17 VICVLVGVAFLTLLERKVLGYMQIRKGPNKVGYCGILQPFSDAVKLFNKEQTFPMSANYLPYYFSPIFSLFISLLCWMVM 96
Cdd:pfam00146   6 LVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAFAVI 85


                  ..
gi 125632041   97 PF 98
Cdd:pfam00146  86 PF 87
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 17-97 3.34e-25

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 95.84  E-value: 3.34e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125632041  17 VICVLVGVAFLTLLERKVLGYMQIRKGPNKVGYCGILQPFSDAVKLFNKEQTFPMSANYLPYYFSPIFSLFISLLCWMVM 96
Cdd:MTH00071  15 IIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMALTLALIIWTPL 94


                 .
gi 125632041  97 P 97
Cdd:MTH00071  95 P 95
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 17-98 3.41e-25

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 95.96  E-value: 3.41e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125632041  17 VICVLVGVAFLTLLERKVLGYMQIRKGPNKVGYCGILQPFSDAVKLFNKEQTFPMSANYLPYYFSPIFSLFISLLCWMVM 96
Cdd:MTH00216  16 IVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLSFTLALIVWGVI 95


                 ..
gi 125632041  97 PF 98
Cdd:MTH00216  96 PY 97
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 17-98 5.39e-24

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 92.48  E-value: 5.39e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125632041  17 VICVLVGVAFLTLLERKVLGYMQIRKGPNKVGYCGILQPFSDAVKLFNKEQTFPMSANYLPYYFSPIFSLFISLLCWMVM 96
Cdd:MTH00054  12 LVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLAFIAWGVI 91


                 ..
gi 125632041  97 PF 98
Cdd:MTH00054  92 PY 93
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 17-98 9.72e-23

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 89.42  E-value: 9.72e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125632041  17 VICVLVGVAFLTLLERKVLGYMQIRKGPNKVGYCGILQPFSDAVKLFNKEQTFPMSANYLPYYFSPIFSLFISLLCWMVM 96
Cdd:COG1005   19 LVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFAVI 98


                 ..
gi 125632041  97 PF 98
Cdd:COG1005   99 PF 100
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
17-98 8.26e-20

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 81.39  E-value: 8.26e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125632041  17 VICVLVGVAFLTLLERKVLGYMQIRKGPNKVGYCGILQPFSDAVKLFNKEQTFPMSANYLPYYFSPIFSLFISLLCWMVM 96
Cdd:PRK06076  20 LVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFIPAFLAWAVI 99


                 ..
gi 125632041  97 PF 98
Cdd:PRK06076 100 PF 101
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 17-100 4.16e-19

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 78.79  E-value: 4.16e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125632041  17 VICVLVGVAFLTLLERKVLGYMQIRKGPNKVGYCGILQPFSDAVKLFNKEQTFPMSANYLPYYFSPIFSLFISLLCWMVM 96
Cdd:MTH00090   6 MIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEWFVL 85


                 ....
gi 125632041  97 PFYF 100
Cdd:MTH00090  86 PYFF 89
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 20-96 2.60e-17

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 74.67  E-value: 2.60e-17
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 125632041  20 VLVGVAFLTLLERKVLGYMQIRKGPNKVGYCGILQPFSDAVKLFNKEQTFPMSANYLPYYFSPIFSLFISLLCWMVM 96
Cdd:MTH00029  20 LLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLAILAWAIV 96
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 18-69 8.17e-12

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 59.17  E-value: 8.17e-12
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 125632041  18 ICVLVGVAFLTLLERKVLGYMQIRKGPNKVGYCGILQPFSDAVKLFNKEQTF 69
Cdd:MTH00058  12 LIILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVY 63
ndhA CHL00032
NADH dehydrogenase subunit 1
 17-98 2.36e-07

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 46.87  E-value: 2.36e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125632041  17 VICVLVGVAFLTLLERKVLGYMQIRKGPNKVGYCGILQPFSDAVKLFNKEQTFPMSANYLPYYFSPIFSLFISLLCWMVM 96
Cdd:CHL00032  37 VLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAVISILLSYLVI 116


                 ..
gi 125632041  97 PF 98
Cdd:CHL00032 117 PF 118
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
17-98 8.48e-06

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 42.48  E-value: 8.48e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 125632041  17 VICVLVGVAFLTLLERKVLGYMQIRKGPnkvgycGILQPFSDAVKLFNKEQTFPMSANYLpYYFSPIFSLFISLLCWMVM 96
Cdd:COG0650   11 LLLALLLAPLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASWL-FRAAPYVALAAMLLAALLV 83


                 ..
gi 125632041  97 PF 98
Cdd:COG0650   84 PV 85
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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