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Conserved domains on  [gi|126507442|gb|ABO15006|]
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DegQ [Bacillus subtilis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DegQ super family cl06985
DegQ (SacQ) family; This family consists of the DegQ (formerly sacQ) regulatory peptides. The ...
 1-46 8.14e-13

DegQ (SacQ) family; This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation.


The actual alignment was detected with superfamily member pfam08181:

Pssm-ID: 471570  Cd Length: 46  Bit Score: 55.40  E-value: 8.14e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 126507442   1 MEK-KLEEVKQLLFRLELDIKETTDSLRNINKSIDQLDKYNYaMKIS 46
Cdd:pfam08181  1 MEKqKIEELKQLLWRLENEIRETTDSLRNINKSIDQYDKYNY-MKIS 46
 
Name Accession Description Interval E-value
DegQ pfam08181
DegQ (SacQ) family; This family consists of the DegQ (formerly sacQ) regulatory peptides. The ...
 1-46 8.14e-13

DegQ (SacQ) family; This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation.


Pssm-ID: 285404  Cd Length: 46  Bit Score: 55.40  E-value: 8.14e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 126507442   1 MEK-KLEEVKQLLFRLELDIKETTDSLRNINKSIDQLDKYNYaMKIS 46
Cdd:pfam08181  1 MEKqKIEELKQLLWRLENEIRETTDSLRNINKSIDQYDKYNY-MKIS 46
reg_protDegQ_Bacil NF041457
degradation enzyme regulation protein DegQ; gene synonym sacQ
 2-46 1.43e-10

degradation enzyme regulation protein DegQ; gene synonym sacQ


Pssm-ID: 469345  Cd Length: 46  Bit Score: 49.43  E-value: 1.43e-10
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 126507442  2 EKKLEEVKQLLFRLELDIKETTDSLRNINKSIDQLDKYNYaMKIS 46
Cdd:NF041457  3 KYKIEELKQLLWRLENEIRETKDSLRNINKSIDQYDKYAY-VKIS 46
 
Name Accession Description Interval E-value
DegQ pfam08181
DegQ (SacQ) family; This family consists of the DegQ (formerly sacQ) regulatory peptides. The ...
 1-46 8.14e-13

DegQ (SacQ) family; This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation.


Pssm-ID: 285404  Cd Length: 46  Bit Score: 55.40  E-value: 8.14e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 126507442   1 MEK-KLEEVKQLLFRLELDIKETTDSLRNINKSIDQLDKYNYaMKIS 46
Cdd:pfam08181  1 MEKqKIEELKQLLWRLENEIRETTDSLRNINKSIDQYDKYNY-MKIS 46
reg_protDegQ_Bacil NF041457
degradation enzyme regulation protein DegQ; gene synonym sacQ
 2-46 1.43e-10

degradation enzyme regulation protein DegQ; gene synonym sacQ


Pssm-ID: 469345  Cd Length: 46  Bit Score: 49.43  E-value: 1.43e-10
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*
gi 126507442  2 EKKLEEVKQLLFRLELDIKETTDSLRNINKSIDQLDKYNYaMKIS 46
Cdd:NF041457  3 KYKIEELKQLLWRLENEIRETKDSLRNINKSIDQYDKYAY-VKIS 46
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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