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Conserved domains on  [gi|133925785|gb|ABO43656|]
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cytochrome b, partial (mitochondrion) [Macroscelides proboscideus proboscideus]

Protein Classification

cytochrome b( domain architecture ID 11475898)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-341 0e+00

cytochrome b; Provisional


:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 703.32  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785   1 LPAPSNISSWWNFGSLLGMCLIIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYVHANGASLFFICLFIHAGR 80
Cdd:MTH00100  21 LPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGR 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785  81 GIYYGSYLYSETWNIGVALLFITMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKATLTRFFA 160
Cdd:MTH00100 101 GLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFA 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785 161 FHFILPFIIAALAMVHLLFLHETGSNNPLGLISDSDKIPFHPYYTIKDLLGMLLTILLLTGLVLFSPDLLGDPDNYTPAN 240
Cdd:MTH00100 181 FHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPAN 260

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785 241 PLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVALVMSILILAIMPLLHTSKHRSLMFRPISQCLFWILVADMLTLTWIGG 320
Cdd:MTH00100 261 PLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGG 340

                        330       340
                 ....*....|....*....|.
gi 133925785 321 QPVEDPFITIGQVASMLYFLL 341
Cdd:MTH00100 341 QPVEHPFIIIGQLASILYFLI 361
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-341 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 703.32  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785   1 LPAPSNISSWWNFGSLLGMCLIIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYVHANGASLFFICLFIHAGR 80
Cdd:MTH00100  21 LPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGR 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785  81 GIYYGSYLYSETWNIGVALLFITMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKATLTRFFA 160
Cdd:MTH00100 101 GLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFA 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785 161 FHFILPFIIAALAMVHLLFLHETGSNNPLGLISDSDKIPFHPYYTIKDLLGMLLTILLLTGLVLFSPDLLGDPDNYTPAN 240
Cdd:MTH00100 181 FHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPAN 260

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785 241 PLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVALVMSILILAIMPLLHTSKHRSLMFRPISQCLFWILVADMLTLTWIGG 320
Cdd:MTH00100 261 PLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGG 340

                        330       340
                 ....*....|....*....|.
gi 133925785 321 QPVEDPFITIGQVASMLYFLL 341
Cdd:MTH00100 341 QPVEHPFIIIGQLASILYFLI 361
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
2-340 1.19e-126

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 368.35  E-value: 1.19e-126
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785   2 PAPSNISSWWNFGSLLGMCLIIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYVHANGASLFFICLFIHAGRG 81
Cdd:COG1290   31 PFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRG 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785  82 IYYGSY-----LyseTWNIGVALLFITMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKATLT 156
Cdd:COG1290  111 FFYGAYkkpreL---NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLN 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785 157 RFFAFH-FILPFIIAALAMVHLLFLHETGSNNPLG----LISDSDKIPFHPYYTIKDLLGMLLTILLLTGLVLFSPDllG 231
Cdd:COG1290  188 RFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--N 265

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785 232 DPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVVALVMSILILAIMPLLHTSKHRSLMFRPISQCLFWILV 309
Cdd:COG1290  266 PPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFI 345

                        330       340       350
                 ....*....|....*....|....*....|.
gi 133925785 310 ADMLTLTWIGGQPveDPFITIGQVASMLYFL 340
Cdd:COG1290  346 VFFIVLTILGANP--PIATLLGSINTVTYFA 374
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-186 2.28e-92

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 273.86  E-value: 2.28e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785   1 LPAPSNISSWWNFGSLLGMCLIIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYVHANGASLFFICLFIHAGR 80
Cdd:cd00284   13 LPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFR 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785  81 GIYYGSY--LYSETWNIGVALLFITMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKATLTRF 158
Cdd:cd00284   93 GLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRF 172

                        170       180
                 ....*....|....*....|....*...
gi 133925785 159 FAFHFILPFIIAALAMVHLLFLHETGSN 186
Cdd:cd00284  173 FALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-184 1.66e-86

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 258.47  E-value: 1.66e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785    1 LPAPSNISSWWNFGSLLGMCLIIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYVHANGASLFFICLFIHAGR 80
Cdd:pfam00033   4 LPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFR 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785   81 GIYYG--SYLYSETWNIGVALLFITMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKATLTRF 158
Cdd:pfam00033  84 GLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRF 163

                         170       180
                  ....*....|....*....|....*.
gi 133925785  159 FAFHFILPFIIAALAMVHLLFLHETG 184
Cdd:pfam00033 164 FSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 238-331 3.64e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 55.19  E-value: 3.64e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785  238 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVALVMSILILAIMPLLHT-SKHRSLMFRPISQCLFWILVADMLTLT 316
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFRRPVATTVFLFGTVVALWLG 144

                          90
                  ....*....|....*
gi 133925785  317 wIGGQPVEDPFITIG 331
Cdd:TIGR01156 145 -IGATLPIDKSLTLG 158
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-341 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 703.32  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785   1 LPAPSNISSWWNFGSLLGMCLIIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYVHANGASLFFICLFIHAGR 80
Cdd:MTH00100  21 LPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGR 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785  81 GIYYGSYLYSETWNIGVALLFITMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKATLTRFFA 160
Cdd:MTH00100 101 GLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFA 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785 161 FHFILPFIIAALAMVHLLFLHETGSNNPLGLISDSDKIPFHPYYTIKDLLGMLLTILLLTGLVLFSPDLLGDPDNYTPAN 240
Cdd:MTH00100 181 FHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPAN 260

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785 241 PLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVALVMSILILAIMPLLHTSKHRSLMFRPISQCLFWILVADMLTLTWIGG 320
Cdd:MTH00100 261 PLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGG 340

                        330       340
                 ....*....|....*....|.
gi 133925785 321 QPVEDPFITIGQVASMLYFLL 341
Cdd:MTH00100 341 QPVEHPFIIIGQLASILYFLI 361
CYTB MTH00119
cytochrome b; Provisional
 1-341 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 643.88  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785   1 LPAPSNISSWWNFGSLLGMCLIIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYVHANGASLFFICLFIHAGR 80
Cdd:MTH00119  22 LPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGR 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785  81 GIYYGSYLYSETWNIGVALLFITMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKATLTRFFA 160
Cdd:MTH00119 102 GLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFA 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785 161 FHFILPFIIAALAMVHLLFLHETGSNNPLGLISDSDKIPFHPYYTIKDLLGMLLTILLLTGLVLFSPDLLGDPDNYTPAN 240
Cdd:MTH00119 182 LHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPAN 261

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785 241 PLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVALVMSILILAIMPLLHTSKHRSLMFRPISQCLFWILVADMLTLTWIGG 320
Cdd:MTH00119 262 PLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGS 341

                        330       340
                 ....*....|....*....|.
gi 133925785 321 QPVEDPFITIGQVASMLYFLL 341
Cdd:MTH00119 342 QPVEHPFIIIGQLASILYFTI 362
CYTB MTH00131
cytochrome b; Provisional
 1-341 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 640.93  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785   1 LPAPSNISSWWNFGSLLGMCLIIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYVHANGASLFFICLFIHAGR 80
Cdd:MTH00131  21 LPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGR 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785  81 GIYYGSYLYSETWNIGVALLFITMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKATLTRFFA 160
Cdd:MTH00131 101 GLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFA 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785 161 FHFILPFIIAALAMVHLLFLHETGSNNPLGLISDSDKIPFHPYYTIKDLLGMLLTILLLTGLVLFSPDLLGDPDNYTPAN 240
Cdd:MTH00131 181 FHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPAN 260

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785 241 PLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVALVMSILILAIMPLLHTSKHRSLMFRPISQCLFWILVADMLTLTWIGG 320
Cdd:MTH00131 261 PLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGG 340

                        330       340
                 ....*....|....*....|.
gi 133925785 321 QPVEDPFITIGQVASMLYFLL 341
Cdd:MTH00131 341 MPVEHPFIIIGQVASVLYFSL 361
CYTB MTH00074
cytochrome b; Provisional
 1-341 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 626.32  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785   1 LPAPSNISSWWNFGSLLGMCLIIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYVHANGASLFFICLFIHAGR 80
Cdd:MTH00074  22 LPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGR 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785  81 GIYYGSYLYSETWNIGVALLFITMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKATLTRFFA 160
Cdd:MTH00074 102 GLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFA 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785 161 FHFILPFIIAALAMVHLLFLHETGSNNPLGLISDSDKIPFHPYYTIKDLLGMLLTILLLTGLVLFSPDLLGDPDNYTPAN 240
Cdd:MTH00074 182 FHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPAN 261

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785 241 PLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVALVMSILILAIMPLLHTSKHRSLMFRPISQCLFWILVADMLTLTWIGG 320
Cdd:MTH00074 262 PLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGG 341

                        330       340
                 ....*....|....*....|.
gi 133925785 321 QPVEDPFITIGQVASMLYFLL 341
Cdd:MTH00074 342 QPVEDPFIEIGQAASILYFLL 362
CYTB MTH00191
cytochrome b; Provisional
 1-341 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 612.69  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785   1 LPAPSNISSWWNFGSLLGMCLIIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYVHANGASLFFICLFIHAGR 80
Cdd:MTH00191  18 LPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGR 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785  81 GIYYGSYLYSETWNIGVALLFITMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKATLTRFFA 160
Cdd:MTH00191  98 GLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFT 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785 161 FHFILPFIIAALAMVHLLFLHETGSNNPLGLISDSDKIPFHPYYTIKDLLGMLLTILLLTGLVLFSPDLLGDPDNYTPAN 240
Cdd:MTH00191 178 FHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPAN 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785 241 PLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVALVMSILILAIMPLLHTSKHRSLMFRPISQCLFWILVADMLTLTWIGG 320
Cdd:MTH00191 258 PLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGG 337

                        330       340
                 ....*....|....*....|.
gi 133925785 321 QPVEDPFITIGQVASMLYFLL 341
Cdd:MTH00191 338 QPVEDPFILLGQISSFLYFFL 358
CYTB MTH00156
cytochrome b; Provisional
 1-340 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 605.24  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785   1 LPAPSNISSWWNFGSLLGMCLIIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYVHANGASLFFICLFIHAGR 80
Cdd:MTH00156  11 LPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGR 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785  81 GIYYGSYLYSETWNIGVALLFITMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKATLTRFFA 160
Cdd:MTH00156  91 GIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFT 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785 161 FHFILPFIIAALAMVHLLFLHETGSNNPLGLISDSDKIPFHPYYTIKDLLGMLLTILLLTGLVLFSPDLLGDPDNYTPAN 240
Cdd:MTH00156 171 FHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPAN 250

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785 241 PLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVALVMSILILAIMPLLHTSKHRSLMFRPISQCLFWILVADMLTLTWIGG 320
Cdd:MTH00156 251 PLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGA 330

                        330       340
                 ....*....|....*....|
gi 133925785 321 QPVEDPFITIGQVASMLYFL 340
Cdd:MTH00156 331 RPVEEPYILTGQILTILYFL 350
CYTB MTH00145
cytochrome b; Provisional
 1-341 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 582.25  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785   1 LPAPSNISSWWNFGSLLGMCLIIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYVHANGASLFFICLFIHAGR 80
Cdd:MTH00145  22 LPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGR 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785  81 GIYYGSYLYSETWNIGVALLFITMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKATLTRFFA 160
Cdd:MTH00145 102 GLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFS 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785 161 FHFILPFIIAALAMVHLLFLHETGSNNPLGLISDSDKIPFHPYYTIKDLLGMLLTILLLTGLVLFSPDLLGDPDNYTPAN 240
Cdd:MTH00145 182 LHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPAN 261

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785 241 PLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVALVMSILILAIMPLLHTSKHRSLMFRPISQCLFWILVADMLTLTWIGG 320
Cdd:MTH00145 262 PMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGA 341

                        330       340
                 ....*....|....*....|.
gi 133925785 321 QPVEDPFITIGQVASMLYFLL 341
Cdd:MTH00145 342 CPVEEPYETIGQVFTVLYFLF 362
CYTB MTH00034
cytochrome b; Validated
 1-341 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 565.10  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785   1 LPAPSNISSWWNFGSLLGMCLIIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYVHANGASLFFICLFIHAGR 80
Cdd:MTH00034  21 LPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGR 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785  81 GIYYGSYLYSETWNIGVALLFITMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKATLTRFFA 160
Cdd:MTH00034 101 GLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFA 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785 161 FHFILPFIIAALAMVHLLFLHETGSNNPLGLISDSDKIPFHPYYTIKDLLGMLLTILLLTGLVLFSPDLLGDPDNYTPAN 240
Cdd:MTH00034 181 FHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPAN 260

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785 241 PLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVALVMSILILAIMPLLHTSKHRSLMFRPISQCLFWILVADMLTLTWIGG 320
Cdd:MTH00034 261 PLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGS 340

                        330       340
                 ....*....|....*....|.
gi 133925785 321 QPVEDPFITIGQVASMLYFLL 341
Cdd:MTH00034 341 QPVEYPFILLGQVASVLYFSL 361
CYTB MTH00016
cytochrome b; Validated
 1-341 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 551.21  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785   1 LPAPSNISSWWNFGSLLGMCLIIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYVHANGASLFFICLFIHAGR 80
Cdd:MTH00016  22 LPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGR 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785  81 GIYYGSYLYSETWNIGVALLFITMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKATLTRFFA 160
Cdd:MTH00016 102 GIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFA 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785 161 FHFILPFIIAALAMVHLLFLHETGSNNPLGLISDSDKIPFHPYYTIKDLLGMLLTILLLTGLVLFSPDLLGDPDNYTPAN 240
Cdd:MTH00016 182 LHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPAN 261

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785 241 PLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVALVMSILILAIMPLLHTSKHRSLMFRPISQCLFWILVADMLTLTWIGG 320
Cdd:MTH00016 262 PLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGG 341

                        330       340
                 ....*....|....*....|.
gi 133925785 321 QPVEDPFITIGQVASMLYFLL 341
Cdd:MTH00016 342 RPVEPPYEFLGQIFTVFYFFY 362
CYTB MTH00022
cytochrome b; Validated
 1-340 1.73e-174

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 489.21  E-value: 1.73e-174
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785   1 LPAPSNISSWWNFGSLLGMCLIIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYVHANGASLFFICLFIHAGR 80
Cdd:MTH00022  20 LPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGR 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785  81 GIYYGSYLYSETWNIGVALLFITMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKATLTRFFA 160
Cdd:MTH00022 100 GLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFS 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785 161 FHFILPFIIAALAMVHLLFLHETGSNNPLGLISDSDKIPFHPYYTIKDLLGMLLTILLLTGLVLFSPDLLGDPDNYTPAN 240
Cdd:MTH00022 180 LHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQAN 259

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785 241 PLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVALVMSILILAIMPLLHTSKHRSLMFRPISQCLFWILVADMLTLTWIGG 320
Cdd:MTH00022 260 SLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGS 339

                        330       340
                 ....*....|....*....|
gi 133925785 321 QPVEDPFITIGQVASMLYFL 340
Cdd:MTH00022 340 QVVEEPFILIGQLLSFFYFF 359
CYTB MTH00053
cytochrome b; Provisional
 1-339 5.36e-172

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 482.67  E-value: 5.36e-172
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785   1 LPAPSNISSWWNFGSLLGMCLIIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYVHANGASLFFICLFIHAGR 80
Cdd:MTH00053  22 LPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGR 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785  81 GIYYGSYLYSETWNIGVALLFITMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKATLTRFFA 160
Cdd:MTH00053 102 GIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYS 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785 161 FHFILPFIIAALAMVHLLFLHETGSNNPLGLISDSDKIPFHPYYTIKDLLGMLLTILLLTGLVLFSPDLLGDPDNYTPAN 240
Cdd:MTH00053 182 LHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQAN 261

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785 241 PLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVALVMSILILAIMPLLHTSKHRSLMFRPISQCLFWILVADMLTLTWIGG 320
Cdd:MTH00053 262 PLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGG 341

                        330
                 ....*....|....*....
gi 133925785 321 QPVEDPFITIGQVASMLYF 339
Cdd:MTH00053 342 QPVEEPYILIGQIASIFYF 360
CYTB MTH00224
cytochrome b; Provisional
 1-341 1.23e-171

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 481.73  E-value: 1.23e-171
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785   1 LPAPSNISSWWNFGSLLGMCLIIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYVHANGASLFFICLFIHAGR 80
Cdd:MTH00224  22 LPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGR 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785  81 GIYYGSYLYSETWNIGVALLFITMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKATLTRFFA 160
Cdd:MTH00224 102 GLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFS 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785 161 FHFILPFIIAALAMVHLLFLHETGSNNPLGLISDSDKIPFHPYYTIKDLLGMLLTILLLTGLVLFSPDLLGDPDNYTPAN 240
Cdd:MTH00224 182 FHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMAN 261

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785 241 PLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVALVMSILILAIMPLLHTSKHRSLMFRPISQCLFWILVADMLTLTWIGG 320
Cdd:MTH00224 262 PLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGG 341

                        330       340
                 ....*....|....*....|.
gi 133925785 321 QPVEDPFITIGQVASMLYFLL 341
Cdd:MTH00224 342 RPVEDPFEGIGQVFTILYFSY 362
CYTB MTH00033
cytochrome b; Provisional
 1-339 1.68e-134

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 387.76  E-value: 1.68e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785   1 LPAPSNISSWWNFGSLLGMCLIIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYVHANGASLFFICLFIHAGR 80
Cdd:MTH00033  18 LPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGR 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785  81 GIYYGSYLYSETWNIGVALLFITMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKATLTRFFA 160
Cdd:MTH00033  98 GLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFS 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785 161 FHFILPFIIAALAMVHLLFLHETGSNNPLGLISDSDKIPFHPYYTIKDLLGMLLTILLLTGLVLFS--PDLLGDPDNYTP 238
Cdd:MTH00033 178 LHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQ 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785 239 ANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVALVMSILILAIMPLLHTSKHRSLMFRPISQCLFWILVADMLTLTWI 318
Cdd:MTH00033 258 ANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWI 337

                        330       340
                 ....*....|....*....|..
gi 133925785 319 GGQPV-EDPFITIGQVASMLYF 339
Cdd:MTH00033 338 GSAPAgADPYVLIGRIATIFYF 359
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
2-340 1.19e-126

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 368.35  E-value: 1.19e-126
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785   2 PAPSNISSWWNFGSLLGMCLIIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYVHANGASLFFICLFIHAGRG 81
Cdd:COG1290   31 PFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRG 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785  82 IYYGSY-----LyseTWNIGVALLFITMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKATLT 156
Cdd:COG1290  111 FFYGAYkkpreL---NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLN 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785 157 RFFAFH-FILPFIIAALAMVHLLFLHETGSNNPLG----LISDSDKIPFHPYYTIKDLLGMLLTILLLTGLVLFSPDllG 231
Cdd:COG1290  188 RFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--N 265

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785 232 DPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVVALVMSILILAIMPLLHTSKHRSLMFRPISQCLFWILV 309
Cdd:COG1290  266 PPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFI 345

                        330       340       350
                 ....*....|....*....|....*....|.
gi 133925785 310 ADMLTLTWIGGQPveDPFITIGQVASMLYFL 340
Cdd:COG1290  346 VFFIVLTILGANP--PIATLLGSINTVTYFA 374
CYTB MTH00086
cytochrome b; Provisional
 1-341 1.57e-121

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 353.86  E-value: 1.57e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785   1 LPAPSNISSWWNFGSLLGMCLIIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYVHANGASLFFICLFIHAGR 80
Cdd:MTH00086  10 LPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFK 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785  81 GIYYGSYLYSETWNIGVALLFITMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKATLTRFFA 160
Cdd:MTH00086  90 GLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFV 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785 161 FHFILPFIIAALAMVHLLFLHETGSNNPLGLISDSDKIPFHPYYTIKDlLGMLLTILLLTGLVLFSPDLLGDPDNYTPAN 240
Cdd:MTH00086 170 LHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKD-AYNIIFWLVFIIFSLFYPFNLGDPEMFIEAD 248

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785 241 PLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVALVMSILILAIMPLLHTSkhrSLMFRPISQCLFWILVADMLTLTWIGG 320
Cdd:MTH00086 249 PMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVILSWLGQ 325

                        330       340
                 ....*....|....*....|.
gi 133925785 321 QPVEDPFITIGQVASMLYFLL 341
Cdd:MTH00086 326 CLVEYPFLFLSQIFSFIYFFL 346
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-186 2.28e-92

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 273.86  E-value: 2.28e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785   1 LPAPSNISSWWNFGSLLGMCLIIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYVHANGASLFFICLFIHAGR 80
Cdd:cd00284   13 LPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFR 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785  81 GIYYGSY--LYSETWNIGVALLFITMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKATLTRF 158
Cdd:cd00284   93 GLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRF 172

                        170       180
                 ....*....|....*....|....*...
gi 133925785 159 FAFHFILPFIIAALAMVHLLFLHETGSN 186
Cdd:cd00284  173 FALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 1-341 3.14e-91

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 276.48  E-value: 3.14e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785   1 LPAPSNISSWWNFGSLLGMCLIIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYVHANGASLFFICLFIHAGR 80
Cdd:MTH00046  12 LPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGR 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785  81 GIYYGSYLYSETWNIGVALLFITMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKATLTRFFA 160
Cdd:MTH00046  92 ALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFS 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785 161 FHFILPFIIAALAMVHLLFLHETGSNNPLGLISD-SDKIPFHPYYTIKDLLGMLLTILLLTGLVLFSPDLLGDPDNYTPA 239
Cdd:MTH00046 172 VHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEA 251

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785 240 NPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVaLVMSILILAIMPllhtSKHRSLMFRPISQCLFWILVADMLTLTWIG 319
Cdd:MTH00046 252 DPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV-LVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLIVSLFFSLSYLG 326

                        330       340
                 ....*....|....*....|..
gi 133925785 320 GQPVEDPFITIGQVASMLYFLL 341
Cdd:MTH00046 327 GCHPEYPYLLISQLFSVLMVLL 348
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-184 1.66e-86

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 258.47  E-value: 1.66e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785    1 LPAPSNISSWWNFGSLLGMCLIIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYVHANGASLFFICLFIHAGR 80
Cdd:pfam00033   4 LPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFR 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785   81 GIYYG--SYLYSETWNIGVALLFITMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKATLTRF 158
Cdd:pfam00033  84 GLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRF 163

                         170       180
                  ....*....|....*....|....*.
gi 133925785  159 FAFHFILPFIIAALAMVHLLFLHETG 184
Cdd:pfam00033 164 FSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 187-334 3.74e-53

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 171.67  E-value: 3.74e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785 187 NPLGLISDSDKIPFHPYYTIKDLLGMLLTILLLTGLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPN 266
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 133925785 267 KLGGVVALVMSILILAIMPLLHTSKHRSlMFRPISQCLFWILVADMLTLTWIGGQPVEDPFITIGQVA 334
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
238-338 1.28e-48

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 158.41  E-value: 1.28e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785  238 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVALVMSILILAIMPLLHTSKHRSLMFRPISQCLFWILVADMLTLTW 317
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 133925785  318 IGGQPVEDPFITIGQVASMLY 338
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
68-233 2.08e-42

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 144.69  E-value: 2.08e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785   68 SLFFICLFIHAGRGIYYGSYLYSE--TWNIGVALLFITMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIW 145
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785  146 GGFSVDKATLTRFFAFHF-ILPFIIAALAMVHLLFLHETGSNNPLGLISDSDKIPFHPYYTIKDLLGMLLTILLLTGLVL 224
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 133925785  225 FSPDLLGDP 233
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 13-189 3.02e-42

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 146.40  E-value: 3.02e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785  13 FGSLLGMCLIIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYVHANGASLFFICLFIHAGRGIYYGSYLYSE- 91
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785  92 -TWNIGVALLFITMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKATLTRFFAFH-FILPFII 169
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                        170       180
                 ....*....|....*....|
gi 133925785 170 AALAMVHLLFLHETGSNNPL 189
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 4-189 3.35e-35

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 127.53  E-value: 3.35e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785   4 PSNISSWWNFGSLLGMCLIIQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYVHANGASLFFICLFIHAGRGIY 83
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785  84 YGSYLYSE--TWNIGVALLFITMATAFVGYVLPWGQMSFWGATVITNLLSAIPYVGSTLVEWIWGGFSVDKATLTRFFAF 161
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                        170       180
                 ....*....|....*....|....*....
gi 133925785 162 H-FILPFIIAALAMVHLLFLHETGSNNPL 189
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 238-319 4.78e-11

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 60.58  E-value: 4.78e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785 238 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVALVMSILILAIMPLLHT-SKHRSLMFRPISQCLFwiLVADMLTLt 316
Cdd:COG5679   66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENvNKFQNPFRRPVATAVF--LFGTLVTL- 142


                 ...
gi 133925785 317 WIG 319
Cdd:COG5679  143 WLG 145
petD CHL00058
cytochrome b6/f complex subunit IV
 238-307 8.31e-10

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 56.93  E-value: 8.31e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 133925785 238 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVALVMSILILAIMPLL-HTSKHRSLMFRPISQCLFWI 307
Cdd:CHL00058  65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQNPFRRPVATTVFLI 135
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 238-331 3.64e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 55.19  E-value: 3.64e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 133925785  238 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVVALVMSILILAIMPLLHT-SKHRSLMFRPISQCLFWILVADMLTLT 316
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFRRPVATTVFLFGTVVALWLG 144

                          90
                  ....*....|....*
gi 133925785  317 wIGGQPVEDPFITIG 331
Cdd:TIGR01156 145 -IGATLPIDKSLTLG 158
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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