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Conserved domains on  [gi|149729421|gb|ABR28233|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Lamprotornis mevesii]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 7.53e-155

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 438.10  E-value: 7.53e-155
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421   1 MNPQAKLIFILSLILGSTIAISSNHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLILFSSMVNAWY 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421  81 NGQWDITLLTCPVSCVILTSAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMKFPPITLLYMTSQSLNPSMMITMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421 161 SAALGGWMGLNQTQTRKILAFSSVAHLGWMAIVMTYSPKLALINFYLYVLLTATVFLILNSIKTLKLTTLMTTWTKTPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421 241 SAMLMLSLLSLAGLPPLTGFLPKWLIIQELVNQEMAPTATTMALLSLLSLFFYLRLAYCATITLPPHTTNHMKLWYIHKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 149729421 321 VNTSVAILTATSIALLPISPAILTIM 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 7.53e-155

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 438.10  E-value: 7.53e-155
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421   1 MNPQAKLIFILSLILGSTIAISSNHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLILFSSMVNAWY 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421  81 NGQWDITLLTCPVSCVILTSAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMKFPPITLLYMTSQSLNPSMMITMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421 161 SAALGGWMGLNQTQTRKILAFSSVAHLGWMAIVMTYSPKLALINFYLYVLLTATVFLILNSIKTLKLTTLMTTWTKTPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421 241 SAMLMLSLLSLAGLPPLTGFLPKWLIIQELVNQEMAPTATTMALLSLLSLFFYLRLAYCATITLPPHTTNHMKLWYIHKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 149729421 321 VNTSVAILTATSIALLPISPAILTIM 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-272 6.22e-22

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 93.92  E-value: 6.22e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421   23 SNHWITAWAGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASTLILFSSMVNAWYNGQWDITLL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421   91 CPVSCVILTSAIAMKLGLAPFHFWFPEVLQGCSLTTGLLL-STAMKFPPI-----TLLYMTSQSLNPSMMITMAILSAAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYglirrSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421  165 GGWMGLNQTQTRKILAFSSVAHLGWMAIVM----TYSPKLALINFYLYVLLTATVFLILNSIKTLKLTTLMTTWT----- 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRDYgglak 240

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 149729421  236 KTPSLSAMLMLSLLSLAGLPPLTGFLPKWLIIQELVN 272
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVA 277
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-275 4.39e-21

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 93.64  E-value: 4.39e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421   8 IFILSLILGSTIAISSNHWITAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLILF-------------- 72
Cdd:COG1007  106 ALLLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygatgslnl 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421  73 SSMVNAWYNGQWDITLLTcpVSCVILTSAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMK----FPPITLLYMTSQS 148
Cdd:COG1007  186 AGIAAALAAGGANSPLLL--LGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPG 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421 149 LNPS---MMITMAILSAALGGWMGLNQTQTRKILAFSSVAHLGWMAIVMTYSPKLAL--INFYL--YVLLTATVFLILNS 221
Cdd:COG1007  264 LAADwqlLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILL 343

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 149729421 222 IKTLKLTTLMTT-----WTKTPSLSAMLMLSLLSLAGLPPLTGFLPKWLIIQELVNQEM 275
Cdd:COG1007  344 LSRKGGEAEEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGL 402
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 8-275 6.70e-16

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 78.45  E-value: 6.70e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421    8 IFILSLILGSTIAISSNHWITAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLILFSSMVNAWYNGQWDI 86
Cdd:TIGR01770 106 ILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNF 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421   87 TLLT------------CPVSCVILTSAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMK---FPPITLLYMTSQS--- 148
Cdd:TIGR01770 186 EDLLlflsngmlnislLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYILFgfs 265

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421  149 -LNPSMMITMAILSAALGGWMGLNQTQTRKILAFSSVAHLGWMAIVMTYSPKLALINFYLYVLLTA-------TVFLILN 220
Cdd:TIGR01770 266 eAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYAlmslgafGVLSLLR 345

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 149729421  221 SIKTLKLTTLMTTWTKT---PSLSAMLMLSLLSLAGLPPLTGFLPKWLIIQELVNQEM 275
Cdd:TIGR01770 346 SYKDEWIEYISDFAGLFktnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 7.53e-155

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 438.10  E-value: 7.53e-155
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421   1 MNPQAKLIFILSLILGSTIAISSNHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLILFSSMVNAWY 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421  81 NGQWDITLLTCPVSCVILTSAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMKFPPITLLYMTSQSLNPSMMITMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421 161 SAALGGWMGLNQTQTRKILAFSSVAHLGWMAIVMTYSPKLALINFYLYVLLTATVFLILNSIKTLKLTTLMTTWTKTPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421 241 SAMLMLSLLSLAGLPPLTGFLPKWLIIQELVNQEMAPTATTMALLSLLSLFFYLRLAYCATITLPPHTTNHMKLWYIHKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 149729421 321 VNTSVAILTATSIALLPISPAILTIM 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-346 1.30e-124

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 361.55  E-value: 1.30e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421   1 MNPQAKLIFILSLILGSTIAISSNHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLILFSSMVNAWY 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421  81 NGQWDITLLTCPVSCVILTSAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMKFPPITLLYMTSQSLNPSMMITMAIL 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421 161 SAALGGWMGLNQTQTRKILAFSSVAHLGWMAIVMTYSPKLALINFYLYVLLTATVFLILNSIKTLKLTTLMTTWTKTPSL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421 241 SAMLMLSLLSLAGLPPLTGFLPKWLIIQELVNQEMAPTATTMALLSLLSLFFYLRLAYCATITLPPHTTNHMKLWYIHKP 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                        330       340
                 ....*....|....*....|....*.
gi 149729421 321 VNTSVAILTATSIALLPISPAILTIM 346
Cdd:MTH00070 321 TNNLLSLTIILSLMLLPITPTILNLF 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-346 3.51e-121

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 352.96  E-value: 3.51e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421   1 MNPQAKLIFILSLILGSTIAISSNHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLILFSSMVNAWY 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421  81 NGQWDITLLTCPVSCVILTSAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMKFPPITLLYMTSQSlNPSMMITMAIL 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421 161 SAALGGWMGLNQTQTRKILAFSSVAHLGWMAIVMTYSPKLALINFYLYVLLTATVFLILNSIKTLKLTTLMTTWTKTPSL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421 241 SAMLMLSLLSLAGLPPLTGFLPKWLIIQELVNQEMAPTATTMALLSLLSLFFYLRLAYCATITLPPHTTNHMKLWYIHKP 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                        330       340
                 ....*....|....*....|....*..
gi 149729421 321 VNTS-VAILTATSIALLPISPAILTIM 346
Cdd:MTH00135 320 QLTLpLAISTTATLMLLPLTPAILALL 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-346 2.81e-107

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 317.56  E-value: 2.81e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421   1 MNPQAKLIFILSLILGSTIAISSNHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLILFSSMVNAWY 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421  81 NGQWDITLLTCPVSCVILTSAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMKFPPITLLYMTSQSLNPSMMITMAIL 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421 161 SAALGGWMGLNQTQTRKILAFSSVAHLGWMAIVMTYSPKLALINFYLYVLLTATVFLILNSIKTLKLTTLMTTWTKTPSL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421 241 SAMLMLSLLSLAGLPPLTGFLPKWLIIQELVNQEMAPTATTMALLSLLSLFFYLRLAYCATITLPPhTTNHMKLWYIHKP 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKMKWQFEN 319

                        330       340
                 ....*....|....*....|....*...
gi 149729421 321 V--NTSVAILTATSIALLPISPAILTIM 346
Cdd:MTH00105 320 TkpMTLLPTLIILSTMLLPLTPMLSILE 347
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 6.10e-93

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 280.70  E-value: 6.10e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421   1 MNPQAKLIFILSLILGSTIAISSNHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLILFSSMVNAWY 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421  81 NGQWDITLLTCPVSCVILTSAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMKFPPITLLYMTSQSLNPSMMITMAIL 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421 161 SAALGGWMGLNQTQTRKILAFSSVAHLGWMAIVMTYSPKLALINFYLYVLLTATVFLILNSIKTLKLTTLMTTWTKTPSL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421 241 SAMLMLSLLSLAGLPPLTGFLPKWLIIQELVNQEMAPTATTMALLSLLSLFFYLRLAYCATITLPPHTTNHMKLWYIHKP 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                        330       340
                 ....*....|....*....|....*.
gi 149729421 321 VNTSVAILTATSIALLPISPAILTIM 346
Cdd:MTH00200 321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-272 4.96e-78

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 242.91  E-value: 4.96e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421   1 MNPQAKLIFILSLILGSTIAISSNHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLILFSSMVNAWY 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421  81 NGQWDITLLTCPVSCVILTSAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMKFPPITLLYMTSQSLNPSMMITMAIL 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421 161 SAALGGWMGLNQTQTRKILAFSSVAHLGWMAIVMTYSPKLALINFYLYVLLTATVFLILNSIKTLKLTTLMTTWTKTPSL 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270
                 ....*....|....*....|....*....|..
gi 149729421 241 SAMLMLSLLSLAGLPPLTGFLPKWLIIQELVN 272
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQ 272
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-282 2.58e-54

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 181.17  E-value: 2.58e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421   1 MNPQAKLIFILSLILGSTIAISSNHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLILFSSMVNAWY 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421  81 NGQWDITLLTcpvscvILTSAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMKFPPITLLYMTsqsLNPSMMITMAIL 160
Cdd:MTH00160  82 LMLFNNISSM------LINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421 161 SAALGGWMGLNQTQTRKILAFSSVAHLGWMAIVMTYSPKLALINFYLYVLLTATVFLILNSIKTLKLTTLMTTWTKTPSL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 149729421 241 SAMLMLSLLSLAGLPPLTGFLPKWLIIQELVNQEMAPTATTM 282
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFIL 274
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-275 3.43e-46

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 159.67  E-value: 3.43e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421   5 AKLIFILSLILGSTIAISSNHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLILFSSMVNAWYNGQW 84
Cdd:MTH00144   5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421  85 DITLLtcpvscviLTSAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMKFPPITLLYMTSQSLNPSMMI-TMAILSAA 163
Cdd:MTH00144  85 FSMSL--------LLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLcVISVLSAL 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421 164 LGGWMGLNQTQTRKILAFSSVAHLGWMAIVMTYSPKLALINFYLYVLLTATVFLILNSiKTLKLTTLMTTWTKTPSLSAM 243
Cdd:MTH00144 157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWS-GDSGSMKDLGSLKPSYKTGLS 235

                        250       260       270
                 ....*....|....*....|....*....|..
gi 149729421 244 LMLSLLSLAGLPPLTGFLPKWLIIQELVNQEM 275
Cdd:MTH00144 236 IISLLLSLGGLPPFLGFCSKLLVLISSMESSP 267
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-275 2.85e-44

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 154.94  E-value: 2.85e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421   7 LIFILSLILGSTIAISSNHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLILFSSmvnawyNGQWDI 86
Cdd:MTH00011   9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421  87 TLLTCPVSCVILTSAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMKFPPITLLYMTSQSLNPSMMITMAILSAALGG 166
Cdd:MTH00011  83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421 167 WMGLNQTQTRKILAFSSVAHLGWMAIVMTYSPKLALINFYLYVLLTATVFLILNSIKTLKLTTLMTTWTKTPSLSAMLML 246
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                        250       260
                 ....*....|....*....|....*....
gi 149729421 247 SLLSLAGLPPLTGFLPKWLIIQELVNQEM 275
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLTSNSM 271
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-271 3.68e-37

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 135.96  E-value: 3.68e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421   8 IFILSLILGSTIAISSNHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLILFSSMVnAWYNgqwdit 87
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSL-SFSN------ 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421  88 LLTCPVSCVILTSAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMKFPPITLLymTSQSLNPSMMITMAILSAALGGW 167
Cdd:MTH00197  75 LYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGGI 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421 168 MGLNQTQTRKILAFSSVAHLGWMAIVMTYSPKLALINFYLYVLLTATVFLILNSIKTLKLTTLMTTWTKTPSLSAMLMLS 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232

                        250       260
                 ....*....|....*....|....
gi 149729421 248 LLSLAGLPPLTGFLPKWLIIQELV 271
Cdd:MTH00197 233 FLSLGGLPPLSGFFLKWLILTSLL 256
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-274 4.81e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 101.26  E-value: 4.81e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421  13 LILGSTIAISSNHWITAWAGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASTLILFS-------------SMVNA 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421  79 WYNGQWDITLLTCPVSCVILTSAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMKFPPITLLYmtSQSLNPSMMITMA 158
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421 159 ILSAALGGWMGLNQTQTRKILAFSSVAHLGW----MAIVMTYSPKLALINFYLYVLLTATVFLILNSIKTLKLTTLMT-- 232
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFvlwgIEIGSFESIQASLVYLFIYIIMSICVFSIILALNVYKNLIIEFsg 239

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 149729421 233 TWTKTPSLSAMLMLSLLSLAGLPPLTGFLPKWLIIQELVNQE 274
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQ 281
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-272 6.22e-22

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 93.92  E-value: 6.22e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421   23 SNHWITAWAGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQAAASTLILFSSMVNAWYNGQWDITLL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421   91 CPVSCVILTSAIAMKLGLAPFHFWFPEVLQGCSLTTGLLL-STAMKFPPI-----TLLYMTSQSLNPSMMITMAILSAAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYglirrSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421  165 GGWMGLNQTQTRKILAFSSVAHLGWMAIVM----TYSPKLALINFYLYVLLTATVFLILNSIKTLKLTTLMTTWT----- 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRDYgglak 240

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 149729421  236 KTPSLSAMLMLSLLSLAGLPPLTGFLPKWLIIQELVN 272
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVA 277
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 8-267 3.01e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 94.31  E-value: 3.01e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421   8 IFILSLILGSTIAISSNHWITAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLILFSSMVNAWYNGQWDI 86
Cdd:MTH00199 101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421  87 ----TLLTCPVSCVILTSAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMKFPPITLLYMTSQSLNpsMMITMAILSA 162
Cdd:MTH00199 181 qginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLSI 258

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421 163 ALGGWMGLNQTQTRKILAFSSVAHLGW----MAIVMTYSPKLALINFYLYVLLTATVFLILNSIKTLKLTTLMTTWTK-- 236
Cdd:MTH00199 259 IYGAIGALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFSIILSLKLTKGLIVEVSGLSrk 338

                        250       260       270
                 ....*....|....*....|....*....|.
gi 149729421 237 TPSLSAMLMLSLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199 339 NPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-275 4.39e-21

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 93.64  E-value: 4.39e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421   8 IFILSLILGSTIAISSNHWITAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLILF-------------- 72
Cdd:COG1007  106 ALLLFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygatgslnl 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421  73 SSMVNAWYNGQWDITLLTcpVSCVILTSAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMK----FPPITLLYMTSQS 148
Cdd:COG1007  186 AGIAAALAAGGANSPLLL--LGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPG 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421 149 LNPS---MMITMAILSAALGGWMGLNQTQTRKILAFSSVAHLGWMAIVMTYSPKLAL--INFYL--YVLLTATVFLILNS 221
Cdd:COG1007  264 LAADwqlLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILL 343

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 149729421 222 IKTLKLTTLMTT-----WTKTPSLSAMLMLSLLSLAGLPPLTGFLPKWLIIQELVNQEM 275
Cdd:COG1007  344 LSRKGGEAEEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGL 402
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
9-279 1.30e-19

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 89.49  E-value: 1.30e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421   9 FILSL--ILGSTIAISSNHWITAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLIL-------------- 71
Cdd:PRK05777 106 YLLVLfaLLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLygmsllygatgsls 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421  72 FSSMVNAWYNGQWDITLLTcpVSCVILTSAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMK---FPPIT-LLYMTSQ 147
Cdd:PRK05777 186 FAGIAKALADGSGNSLLLL--FGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAVLLrLLVVAFG 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421 148 SLNPS---MMITMAILSAALGGWMGLNQTQTRKILAFSSVAHLGWMAIVMTYSPKLAL--INFYL--YVLLTATVFLILN 220
Cdd:PRK05777 264 GLSEDwqqVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFGVIS 343

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 149729421 221 SIKTLKLTTLMT-----TWTKTPSLSAMLMLSLLSLAGLPPLTGFLPKWLIIQELVNQEMAPTA 279
Cdd:PRK05777 344 LLRRKGGEAESIsdfagLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLA 407
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 8-275 6.70e-16

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 78.45  E-value: 6.70e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421    8 IFILSLILGSTIAISSNHWITAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLILFSSMVNAWYNGQWDI 86
Cdd:TIGR01770 106 ILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNF 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421   87 TLLT------------CPVSCVILTSAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMK---FPPITLLYMTSQS--- 148
Cdd:TIGR01770 186 EDLLlflsngmlnislLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYILFgfs 265

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421  149 -LNPSMMITMAILSAALGGWMGLNQTQTRKILAFSSVAHLGWMAIVMTYSPKLALINFYLYVLLTA-------TVFLILN 220
Cdd:TIGR01770 266 eAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYIFIYAlmslgafGVLSLLR 345

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 149729421  221 SIKTLKLTTLMTTWTKT---PSLSAMLMLSLLSLAGLPPLTGFLPKWLIIQELVNQEM 275
Cdd:TIGR01770 346 SYKDEWIEYISDFAGLFktnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-267 7.37e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 78.36  E-value: 7.37e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421   3 PQAKLIFILSLILGSTIAISSNHWITAWAGLEINTLAILPLISKSHHPRAI---------EAATKYFLVQAAASTLILFS 73
Cdd:MTH00198 187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421  74 SMVNAWYNGQ--------------WDITLLTCPVSCVILTSAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMKFPPI 139
Cdd:MTH00198 267 CALYFGFTGNegmlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVY 346

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421 140 TLLymTSQSLNPSMMITMAILSAALGGWMGLNQTQTRKILAFSSVAHLGWMAIVMTYSPKLALINFYLYVLL-------T 212
Cdd:MTH00198 347 ILL--TSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAVTylvsalaS 424

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 149729421 213 ATVFLIL------------------NSIKTLKLTTLMTTWTKTPSLSAMLMLSLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00198 425 FTVICTLeefgtrtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 9-283 4.25e-14

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 72.87  E-value: 4.25e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421   9 FILSLILGSTIAISSNHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLILFSSMVNAWYNGQWDITL 88
Cdd:COG0651  112 LFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMAD 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421  89 LTCPVS----------CVILTSAIAMKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMKFPPITLLYMTSQSLNPSM----- 153
Cdd:COG0651  192 LAARLAeldpglllaaFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLTKVGVYAILRVLTLLFGADpalfl 271

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421 154 ---MITMAILSAALGGWMGLNQTQTRKILAFSSVAHLGWMAIVMTYSPKLALINFYLYV----LLTATVFLILNSIKTLK 226
Cdd:COG0651  272 gtlLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhaLAKALLFLAAGAIERAT 351

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 149729421 227 LTTLMT----TWTKTPSLSAMLMLSLLSLAGLPPLTGFLPKWLIIQELVNQEMAPTATTMA 283
Cdd:COG0651  352 GTRDLDklggLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLL 412
ndhB CHL00049
NADH dehydrogenase subunit 2
 7-263 1.27e-08

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 56.17  E-value: 1.27e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421   7 LIFILSLILGSTIAISSNHWITAWAGLEINTLAILPLISKSHHP-RAIEAATKYFLVQAAASTLILF------------- 72
Cdd:CHL00049 114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVYgfswlyglsggei 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421  73 --SSMVNAWYNGQWDITLlTCPVSCVILTSAIAMKLGLAPFHFWFPEVLQGC-----------SLTTGLLLSTAMkfppI 139
Cdd:CHL00049 194 elQEIVNGLINTQMYNSP-GISIALIFITVGIGFKLSLAPFHQWTPDVYEGSptpvvaflsvtSKVAASALATRI----F 268

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421 140 TLLYMTSQSLNPSMMITMAILSAALGGWMGLNQTQTRKILAFSSVAHLGWMAIVMT-------YSPKLALINFYLYVLLT 212
Cdd:CHL00049 269 DIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIvgdsndgYASMITYMLFYIFMNLG 348

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 149729421 213 ATVFLILNSIKTLKLTT--LMTTWTKTPSLSAMLMLSLLSLAGLPPLTGFLPK 263
Cdd:CHL00049 349 TFACIVLFGLRTGTDNIrdYAGLYTKDPFLALSLALCLLSLGGIPPLAGFFGK 401
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 8.90e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 53.56  E-value: 8.90e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421  33 LEINTLAILPLIS-KSHHPRAIEAATKYFLVQAAASTLILFS-SMVNAWYNG----------QWDITLLTcPVSCVILTS 100
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiALLYGQYGTlnmaylavkmSENPTVVA-KIALALFIA 228

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421 101 AIAMKLGLAPFHFWFPEVLQGC--SLTTGLLLSTAMKFPPI--TLLYMTSQSLNPS----MMITMAILSAALGGWMGLNQ 172
Cdd:PRK08376 229 GLAMKSGAVPVHMWLPDAYPAApsSISAMLLVIKQAGLYALarVLFSIYGPAINLAtvgwVIIILGCLTMFVGVAMAVVQ 308

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421 173 TQTRKILAFSSVAHLGWM------AIVMTYSPKLA-------------LINFYLY-VLLTATVFLILNSIKTLKLTTLMT 232
Cdd:PRK08376 309 KDVKRLLAYHSVSQIGYMllglgvGLAALGDPAMAsygeialaggiyhIVNHALYkALLFLTAGAVIYETGTRNLNELGG 388

                        250       260       270
                 ....*....|....*....|....*....|....
gi 149729421 233 TWTKTPSLSAMLMLSLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376 389 LARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 1.77e-06

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 49.66  E-value: 1.77e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421  50 PRAIEAATKYFLVQAAASTLILF-SSMVNAWYNGQWDIT-----LLTCP-----VSCVILTSAIAMKLGLAPFHFWFPEV 118
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQLSaialaLITSPslglaLALVFVIAGIAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421 119 LQGCSLTTGLLLSTAMKFPPITLLYMTSQSLNPSM-------MITMAILSAALGGWMGLNQTQTRKILAFSSVAHLGWMA 191
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAGFALAIRLLVTAFPSFdeqwkllFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421 192 IVMT------YSPKLALINFYLYVLLTATVFLILNSIKTLKLTTLMTTWTKT--PSLSAMLMLSLLSLAGLPPLTGFLPK 263
Cdd:PRK02504 317 IGLVagteagYASMVFYLLAYLFMNLGAFACVILFSLRTGTDQISDYAGLYQkdPLLTLGLSLCLLSLGGIPPLAGFFGK 396
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-192 2.56e-05

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 45.84  E-value: 2.56e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421  49 HPRAIEAATKYFLVQAAASTLILFSSMVNAWYNGQW--DI-TLLTCPVS-------CVILTSAIAMKLGLAPFHFWFPEV 118
Cdd:COG1008  156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIaELAAAPLPltaqlllFLAFFIAFAVKVPMFPFHTWLPDA 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421 119 LQGCSLTTGLLLSTAM---------KFPpITLLYMTSQSLNPsMMITMAILSAALGGWMGLNQTQTRKILAFSSVAHLGW 189
Cdd:COG1008  236 HVEAPTAGSVLLAGVLlkmggygllRFA-LPLFPEASAYFAP-LLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGF 313


                 ...
gi 149729421 190 MAI 192
Cdd:COG1008  314 VLL 316
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 20-192 6.12e-05

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 44.54  E-value: 6.12e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421  20 AISSNHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYF---------------LVQAAASTLILFSSMVNAW----- 79
Cdd:PRK06458 124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIiicsvgvafalfgtiLVYANAATVMGDGEMAILWtellk 203

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421  80 YNGQWDITLLTcpVSCVILTSAIAMKLGLAPFHFWFPEV-LQGCS----LTTGLLLSTAMkFPPITLLYMTSQSLNP--- 151
Cdd:PRK06458 204 HASLLDPTLMK--LAFVFLLIGFGTKVGLFPMHAWLPDAhSEAPSpvsaLLSGVLLNVAL-YAVLRYYILIDAAIGSdfp 280

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 149729421 152 -SMMITMAILSAALGGWMGLNQTQTRKILAFSSVAHLGWMAI 192
Cdd:PRK06458 281 gRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-192 7.78e-05

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 44.16  E-value: 7.78e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421   50 PRAIEAATKYFLVQAAASTLILFSSMVNAWYNGQ-WDI-TLLTCPVSCVILT-------SAIAMKLGLAPFHFWFPEV-- 118
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGtFDLlELLNLPLPFGVQTwlflaffIAFAVKVPLFPLHTWLPDAhv 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421  119 ---LQGCSLTTGLLLSTA----MKFpPITLLYMTSQSLNPSMMItMAILSAALGGWMGLNQTQTRKILAFSSVAHLGWMA 191
Cdd:TIGR01972 232 eapTAGSVILAGVLLKMGtygfLRF-NLPLFPDASLYFAPVLAA-LGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309


                  .
gi 149729421  192 I 192
Cdd:TIGR01972 310 L 310
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 295-340 1.35e-04

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 39.16  E-value: 1.35e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 149729421  295 RLAYCATITLPPHTTNHMKLWYIHKPVNT-SVAILTATSIALLPISP 340
Cdd:pfam06444   5 RLSYSTTLTLFPNTNNSKMKWRFNSTKNTlLLPTLTTLSILLLPLTP 51
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-282 1.65e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 43.33  E-value: 1.65e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421  33 LEINTLAILPLISKSHHPRAIEAATKYFLVQAAASTLILFSSMVNAWYNGQWDITLL--------TCPVSCVILTSAIAM 104
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLagalaenpTVVTAFGFVLLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421 105 KLGLAPFHFWFPEVLQGCSLTTGLLLS---TAMKFPPITLLY--------MTSQSLNpSMMITMAILSAALGGWMGLNQT 173
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAAPPVVTALLSglvTKVAVYALIRIYftvfggdfRFALGLG-WLLAVLALLSMLVGSLAALGQD 293

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421 174 QTRKILAFSSVAHLGWMAIVMTYSPKLALIN--FYL--YVLLTATVFLILNSIKTLKLTTLMTTWT----KTPSLSAMLM 245
Cdd:PRK08375 294 DVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAAGAIEVTYGTRRLSELSglgrRMPLTAAAFA 373

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 149729421 246 LSLLSLAGLPPLTGFLPKWLIIQELVNQEMAPTATTM 282
Cdd:PRK08375 374 VASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVL 410
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-282 5.46e-04

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 41.91  E-value: 5.46e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421   2 NPQAKLIFILSLILGSTIAISSNHWITAWAGLEINTLAILPLISKSHHpRAIEAATKYFLVQAAASTLIL---------- 71
Cdd:PRK08668  96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLyaifliyakt 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421  72 ----FSSMVNAWYNG-----QWDITLLtcpvscviLTSAIAMKLGLAPFHFWFPE-----------VLQGCSLTTG---L 128
Cdd:PRK08668 175 gtfdFADISQGLINDtstgfALIVFLF--------LLAFGVAKAGIFPLHVWAPDayseapqsfsaVLSGQLSKLGaygF 246

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421 129 LLSTAMkFPPITLLY----MTSQSLNPSMMITMAILSAALGGWMGLNQTQTRKILAFSSVAHLGWMAI---VMT-YSPKL 200
Cdd:PRK08668 247 LLVLYV-LPGTKLFSefgtYRGVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVglgLGTsLGFAG 325

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421 201 ALINFYLYVLLTATVFLILNSIKTLKLTTLMT----TWTKTPSLSAMLMLSLLSLAGLPPLTGFLPKWLIIQELVNQEMA 276
Cdd:PRK08668 326 GLFHVFNHALFKGLFFLIFAAVIYRTGTTKISemggLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMP 405


                 ....*.
gi 149729421 277 PTATTM 282
Cdd:PRK08668 406 ITAFMA 411
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-194 5.97e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 41.45  E-value: 5.97e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421 101 AIAMKLGLAPFHFWFPEV-----LQGCSLTTGLLLSTA------MKFPpitLLYMTSQSLNPSMmITMAILSAALGGWMG 169
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILLKLGgyglvrLSWP---ILPLGAQNLAPAV-IAMGIVGIVYGSFAT 314

                         90       100
                 ....*....|....*....|....*
gi 149729421 170 LNQTQTRKILAFSSVAHLGWMAIVM 194
Cdd:MTH00226 315 CRQIDVKRLVAYSSVAHMGLVSITL 339
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-215 1.02e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 40.89  E-value: 1.02e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421  13 LILGSTIAISSNHWITAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQAAA------STLILFSSMVNAWYNGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421  87 TLLTCPVS----CVILTSAIAM------KLGLAPFHFWFPEV-LQGCSLTTGLLLSTAMKFPPITLLYMTS-------QS 148
Cdd:PRK08676 191 TELAAHASllspSVLGASFLFIfigflaKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqsgaAE 270

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 149729421 149 LNPSMMITMAILSAALGGWMGLNQTQTRKILAFSSVAHLGWMAIVMTYSPKLALINFYLYVLLTATV 215
Cdd:PRK08676 271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLV 337
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 97-193 1.39e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 40.68  E-value: 1.39e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421  97 ILTSAIAmKLGLAPFHFWFPEVLQGCSLTTGLLLSTAMKFPPITLL------YMTSQSLNPsMMITMAILSAALGGWMGL 170
Cdd:PRK12644 209 ILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVarlapgFADVPVWRP-TVLVLGLATMLLGGWRAL 286

                         90       100
                 ....*....|....*....|...
gi 149729421 171 NQTQTRKILAFSSVAHLGWMAIV 193
Cdd:PRK12644 287 RQHDLKLILAYGTVSQLGFLTVL 309
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-192 2.77e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 39.24  E-value: 2.77e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 149729421  55 AATKYFLVQAAASTLILFSSMVNAWYNGQ--WDITLLTC---PVSCVILTS-----AIAMKLGLAPFHFWFPEVLQGCSL 124
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLYagfliAFGVKLPIFPLHTWLPDAHGEASA 217

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 149729421 125 TTGLLLS-TAMKFPPITLLYMTSQSLnPSMMITMAILSAALGG----WMGLN---QTQTRKILAFSSVAHLGWMAI 192
Cdd:PRK12561 218 PVSMILAgVLLKMGGYALIRFNVQML-PDAHVYFAPALAILGVvniiYGALNafaQDNVKRRLAYSSVSHMGFVLL 292
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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