NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|149930943|gb|ABR45666|]
View 

WRKY3, partial [Herrania albiflora]

Protein Classification

WRKY domain-containing protein( domain architecture ID 950)

WRKY domain-containing protein belongs to one of the largest families of transcriptional regulators in plants, which are involved in plant immune response.

Gene Ontology:  GO:0003700
PubMed:  20304701

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
WRKY super family cl03892
WRKY DNA -binding domain;
1-18 1.60e-04

WRKY DNA -binding domain;


The actual alignment was detected with superfamily member smart00774:

Pssm-ID: 470899  Cd Length: 59  Bit Score: 32.84  E-value: 1.60e-04
                          10
                  ....*....|....*....
gi 149930943    1 PYPRSYYKCT-TPGCNVRK 18
Cdd:smart00774 19 PYPRSYYRCTyTQGCPAKK 37
 
Name Accession Description Interval E-value
WRKY smart00774
DNA binding domain; The WRKY domain is a DNA binding domain found in one or two copies in a ...
1-18 1.60e-04

DNA binding domain; The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.


Pssm-ID: 214815  Cd Length: 59  Bit Score: 32.84  E-value: 1.60e-04
                          10
                  ....*....|....*....
gi 149930943    1 PYPRSYYKCT-TPGCNVRK 18
Cdd:smart00774 19 PYPRSYYRCTyTQGCPAKK 37
WRKY pfam03106
WRKY DNA -binding domain;
1-18 7.73e-04

WRKY DNA -binding domain;


Pssm-ID: 460808  Cd Length: 57  Bit Score: 31.29  E-value: 7.73e-04
                         10
                 ....*....|....*....
gi 149930943   1 PYPRSYYKCT-TPGCNVRK 18
Cdd:pfam03106 17 KFPRSYYRCThKPGCPAKK 35
 
Name Accession Description Interval E-value
WRKY smart00774
DNA binding domain; The WRKY domain is a DNA binding domain found in one or two copies in a ...
1-18 1.60e-04

DNA binding domain; The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.


Pssm-ID: 214815  Cd Length: 59  Bit Score: 32.84  E-value: 1.60e-04
                          10
                  ....*....|....*....
gi 149930943    1 PYPRSYYKCT-TPGCNVRK 18
Cdd:smart00774 19 PYPRSYYRCTyTQGCPAKK 37
WRKY pfam03106
WRKY DNA -binding domain;
1-18 7.73e-04

WRKY DNA -binding domain;


Pssm-ID: 460808  Cd Length: 57  Bit Score: 31.29  E-value: 7.73e-04
                         10
                 ....*....|....*....
gi 149930943   1 PYPRSYYKCT-TPGCNVRK 18
Cdd:pfam03106 17 KFPRSYYRCThKPGCPAKK 35
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH