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Conserved domains on  [gi|151368096|gb|ABS10780|]
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apocytochrome b, partial (mitochondrion) [Stackhousia minima]

Protein Classification

cytochrome b( domain architecture ID 999997)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Symbol:  CYTB
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl33360
cytochrome b; Provisional
 10-255 2.42e-132

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00156:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 377.59  E-value: 2.42e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096  10 SILNQHLIDYPTPSNLSYWWGFGSLAGICLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLRYMHANGASMFL 89
Cdd:MTH00156   2 KIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFF 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096  90 IVVHLHIFRGLYHASYSSPreFVWCLGVVIFLLMILTAFTGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFS 169
Cdd:MTH00156  82 ICIYLHIGRGIYYGSYKLK--HTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFS 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096 170 VDNATLNRFFSLHHLLPFILVGASLLHLAALHQYGSNNPLGVHSEMDKIAFYPYFYVKDLVGWVAFAIFFSIWIFYAPNV 249
Cdd:MTH00156 160 VDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYL 239


                 ....*.
gi 151368096 250 LGHPDN 255
Cdd:MTH00156 240 LGDPEN 245
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 10-255 2.42e-132

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 377.59  E-value: 2.42e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096  10 SILNQHLIDYPTPSNLSYWWGFGSLAGICLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLRYMHANGASMFL 89
Cdd:MTH00156   2 KIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFF 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096  90 IVVHLHIFRGLYHASYSSPreFVWCLGVVIFLLMILTAFTGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFS 169
Cdd:MTH00156  82 ICIYLHIGRGIYYGSYKLK--HTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFS 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096 170 VDNATLNRFFSLHHLLPFILVGASLLHLAALHQYGSNNPLGVHSEMDKIAFYPYFYVKDLVGWVAFAIFFSIWIFYAPNV 249
Cdd:MTH00156 160 VDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYL 239


                 ....*.
gi 151368096 250 LGHPDN 255
Cdd:MTH00156 240 LGDPEN 245
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
7-255 2.33e-109

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 320.58  E-value: 2.33e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096   7 PISSILNQHLiDYPTPSNLSYWWGFGSLAGICLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLRYMHANGAS 86
Cdd:COG1290   19 PLASLVREHL-EYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096  87 MFLIVVHLHIFRGLYHASYSSPREFVWCLGVVIFLLMILTAFTGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWG 166
Cdd:COG1290   98 LFFAAVYLHMFRGFFYGAYKKPRELNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096 167 GFSVDNATLNRFFSLH-HLLPFILVGASLLHLAALHQYGSNNPLGVHSE----MDKIAFYPYFYVKDLVGWVAFAIFFSI 241
Cdd:COG1290  178 GEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKktekVDGVPFHPYYTVKDGFGFFVFLGVFAL 257

                        250
                 ....*....|....
gi 151368096 242 WIFYAPNvlGHPDN 255
Cdd:COG1290  258 LAFFFPI--NPPPN 269
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 7-206 3.69e-96

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 280.02  E-value: 3.69e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096   7 PISSILNQHLIDYPTPSNLSYWWGFGSLAGICLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLRYMHANGAS 86
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096  87 MFLIVVHLHIFRGLYHASYSSPREFVWCLGVVIFLLMILTAFTGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWG 166
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKKPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 151368096 167 GFSVDNATLNRFFSLHHLLPFILVGASLLHLAALHQYGSN 206
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
16-204 7.93e-86

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 253.46  E-value: 7.93e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096   16 LIDYPTPSNLSYWWGFGSLAGICLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLRYMHANGASMFLIVVHLH 95
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096   96 IFRGLYHASYSSPREFVWCLGVVIFLLMILTAFTGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATL 175
Cdd:pfam00033  81 IFRGLYYGGFSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 151368096  176 NRFFSLHHLLPFILVGASLLHLAALHQYG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb_ExtP NF040969
selenite/tellurite reduction operon b-type cytochrome ExtP;
26-196 1.50e-45

selenite/tellurite reduction operon b-type cytochrome ExtP;


Pssm-ID: 468899  Cd Length: 205  Bit Score: 151.29  E-value: 1.50e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096  26 SYWWGFGSLAGICLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLRYMHANGASMFLIVVHLHIFRGLYHASY 105
Cdd:NF040969  22 SYTWCLGGLTFLLFVILTVTGIFLMFYYVPTPEAAYESVQYLQNEVAFGQLVRNMHHWAANLMVVMVFLHMLRVFYTGSY 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096 106 SSPREFVWCLGVVIFLLMILTAFTGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLH-HL 184
Cdd:NF040969 102 KPPREFNWVVGVGLLVLTLGLSFTGYLLPWDQLAYWAVTVGTNIAGSIPVVGTLLQLLQLGGSEVGAATLTRFYALHvFV 181

                        170
                 ....*....|..
gi 151368096 185 LPFILVGASLLH 196
Cdd:NF040969 182 LPAALIILMAAH 193
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 10-255 2.42e-132

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 377.59  E-value: 2.42e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096  10 SILNQHLIDYPTPSNLSYWWGFGSLAGICLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLRYMHANGASMFL 89
Cdd:MTH00156   2 KIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFF 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096  90 IVVHLHIFRGLYHASYSSPreFVWCLGVVIFLLMILTAFTGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFS 169
Cdd:MTH00156  82 ICIYLHIGRGIYYGSYKLK--HTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFS 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096 170 VDNATLNRFFSLHHLLPFILVGASLLHLAALHQYGSNNPLGVHSEMDKIAFYPYFYVKDLVGWVAFAIFFSIWIFYAPNV 249
Cdd:MTH00156 160 VDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYL 239


                 ....*.
gi 151368096 250 LGHPDN 255
Cdd:MTH00156 240 LGDPEN 245
CYTB MTH00145
cytochrome b; Provisional
 7-255 5.36e-124

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 357.29  E-value: 5.36e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096   7 PISSILNQHLIDYPTPSNLSYWWGFGSLAGICLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLRYMHANGAS 86
Cdd:MTH00145  10 PVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGAS 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096  87 MFLIVVHLHIFRGLYHASYSSPRefVWCLGVVIFLLMILTAFTGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWG 166
Cdd:MTH00145  90 FFFICIYLHIGRGLYYGSYLMQH--TWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWG 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096 167 GFSVDNATLNRFFSLHHLLPFILVGASLLHLAALHQYGSNNPLGVHSEMDKIAFYPYFYVKDLVGWVAFAIFFSIWIFYA 246
Cdd:MTH00145 168 GFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFF 247


                 ....*....
gi 151368096 247 PNVLGHPDN 255
Cdd:MTH00145 248 PNLLGDPEN 256
CYTB MTH00119
cytochrome b; Provisional
 6-255 3.56e-123

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 355.36  E-value: 3.56e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096   6 QPISSILNQHLIDYPTPSNLSYWWGFGSLAGICLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLRYMHANGA 85
Cdd:MTH00119   9 HPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGA 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096  86 SMFLIVVHLHIFRGLYHASYSSprEFVWCLGVVIFLLMILTAFTGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLW 165
Cdd:MTH00119  89 SMFFICIYLHIGRGLYYGSYLY--KETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIW 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096 166 GGFSVDNATLNRFFSLHHLLPFILVGASLLHLAALHQYGSNNPLGVHSEMDKIAFYPYFYVKDLVGWVAFAIFFSIWIFY 245
Cdd:MTH00119 167 GGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALF 246

                        250
                 ....*....|
gi 151368096 246 APNVLGHPDN 255
Cdd:MTH00119 247 SPNLLGDPEN 256
CYTB MTH00191
cytochrome b; Provisional
 5-255 3.08e-122

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 352.30  E-value: 3.08e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096   5 KQPISSILNQHLIDYPTPSNLSYWWGFGSLAGICLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLRYMHANG 84
Cdd:MTH00191   4 THPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANG 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096  85 ASMFLIVVHLHIFRGLYHASYSSPRefVWCLGVVIFLLMILTAFTGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWL 164
Cdd:MTH00191  84 ASFFFICIYLHIGRGLYYGSYLNKE--TWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096 165 WGGFSVDNATLNRFFSLHHLLPFILVGASLLHLAALHQYGSNNPLGVHSEMDKIAFYPYFYVKDLVGWVAFAIFFSIWIF 244
Cdd:MTH00191 162 WGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVL 241

                        250
                 ....*....|.
gi 151368096 245 YAPNVLGHPDN 255
Cdd:MTH00191 242 FSPNLLGDPEN 252
CYTB MTH00131
cytochrome b; Provisional
 7-255 3.95e-118

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 342.40  E-value: 3.95e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096   7 PISSILNQHLIDYPTPSNLSYWWGFGSLAGICLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLRYMHANGAS 86
Cdd:MTH00131   9 PLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGAS 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096  87 MFLIVVHLHIFRGLYHASYSSPRefVWCLGVVIFLLMILTAFTGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWG 166
Cdd:MTH00131  89 FFFICIYLHIGRGLYYGSYLYKE--TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096 167 GFSVDNATLNRFFSLHHLLPFILVGASLLHLAALHQYGSNNPLGVHSEMDKIAFYPYFYVKDLVGWVAFAIFFSIWIFYA 246
Cdd:MTH00131 167 GFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFS 246


                 ....*....
gi 151368096 247 PNVLGHPDN 255
Cdd:MTH00131 247 PNLLGDPDN 255
CYTB MTH00016
cytochrome b; Validated
 1-255 7.39e-118

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 341.66  E-value: 7.39e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096   1 FSPLKQ--PISSILNQHLIDYPTPSNLSYWWGFGSLAGICLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLR 78
Cdd:MTH00016   2 FSPMRKthPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096  79 YMHANGASMFLIVVHLHIFRGLYHASYSSPRefVWCLGVVIFLLMILTAFTGYVLPWGQMSFWGATVITSLASAIPVVGD 158
Cdd:MTH00016  82 NLHANGASFFFICLYLHIGRGIYYGSYFLME--TWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGK 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096 159 TIVTWLWGGFSVDNATLNRFFSLHHLLPFILVGASLLHLAALHQYGSNNPLGVHSEMDKIAFYPYFYVKDLVGWVAFAIF 238
Cdd:MTH00016 160 MLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFL 239

                        250
                 ....*....|....*..
gi 151368096 239 FSIWIFYAPNVLGHPDN 255
Cdd:MTH00016 240 LLSVVLLWPNILGDPEN 256
CYTB MTH00074
cytochrome b; Provisional
 7-255 3.99e-115

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 334.73  E-value: 3.99e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096   7 PISSILNQHLIDYPTPSNLSYWWGFGSLAGICLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLRYMHANGAS 86
Cdd:MTH00074  10 PLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGAS 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096  87 MFLIVVHLHIFRGLYHASYSSPRefVWCLGVVIFLLMILTAFTGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWG 166
Cdd:MTH00074  90 FFFICIYLHIGRGLYYGSYMYKE--TWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWG 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096 167 GFSVDNATLNRFFSLHHLLPFILVGASLLHLAALHQYGSNNPLGVHSEMDKIAFYPYFYVKDLVGWVAFAIFFSIWIFYA 246
Cdd:MTH00074 168 GFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFS 247


                 ....*....
gi 151368096 247 PNVLGHPDN 255
Cdd:MTH00074 248 PNLLGDPDN 256
CYTB MTH00100
cytochrome b; Provisional
 7-255 4.78e-114

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 331.99  E-value: 4.78e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096   7 PISSILNQHLIDYPTPSNLSYWWGFGSLAGICLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLRYMHANGAS 86
Cdd:MTH00100   9 PLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGAS 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096  87 MFLIVVHLHIFRGLYHASYSSPRefVWCLGVVIFLLMILTAFTGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWG 166
Cdd:MTH00100  89 MFFICLFLHVGRGLYYGSYLFLE--TWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096 167 GFSVDNATLNRFFSLHHLLPFILVGASLLHLAALHQYGSNNPLGVHSEMDKIAFYPYFYVKDLVGWVAFAIFFSIWIFYA 246
Cdd:MTH00100 167 GFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFS 246


                 ....*....
gi 151368096 247 PNVLGHPDN 255
Cdd:MTH00100 247 PDLLGDPDN 255
CYTB MTH00053
cytochrome b; Provisional
 7-255 6.18e-113

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 329.36  E-value: 6.18e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096   7 PISSILNQHLIDYPTPSNLSYWWGFGSLAGICLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLRYMHANGAS 86
Cdd:MTH00053  10 PVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGAS 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096  87 MFLIVVHLHIFRGLYHASYSspREFVWCLGVVIFLLMILTAFTGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWG 166
Cdd:MTH00053  90 MFFLCVYFHIGRGIYYGSYT--KIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWG 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096 167 GFSVDNATLNRFFSLHHLLPFILVGASLLHLAALHQYGSNNPLGVHSEMDKIAFYPYFYVKDLVGWVAFAIFFSIWIFYA 246
Cdd:MTH00053 168 GFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLF 247


                 ....*....
gi 151368096 247 PNVLGHPDN 255
Cdd:MTH00053 248 PYSLGDAEN 256
CYTB MTH00034
cytochrome b; Validated
 1-255 1.76e-111

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 325.51  E-value: 1.76e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096   1 FSPLKQ--PISSILNQHLIDYPTPSNLSYWWGFGSLAGICLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLR 78
Cdd:MTH00034   1 TGPLRKshPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096  79 YMHANGASMFLIVVHLHIFRGLYHASYSSprEFVWCLGVVIFLLMILTAFTGYVLPWGQMSFWGATVITSLASAIPVVGD 158
Cdd:MTH00034  81 NIHANGASLFFICLYFHIGRGLYYGSYVN--IETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGT 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096 159 TIVTWLWGGFSVDNATLNRFFSLHHLLPFILVGASLLHLAALHQYGSNNPLGVHSEMDKIAFYPYFYVKDLVGWVAFAIF 238
Cdd:MTH00034 159 DIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAA 238

                        250
                 ....*....|....*..
gi 151368096 239 FSIWIFYAPNVLGHPDN 255
Cdd:MTH00034 239 LSSLALLFPTALNDPEN 255
CYTB MTH00022
cytochrome b; Validated
 7-255 4.86e-110

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 322.04  E-value: 4.86e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096   7 PISSILNQHLIDYPTPSNLSYWWGFGSLAGICLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLRYMHANGAS 86
Cdd:MTH00022   8 PLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGAS 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096  87 MFLIVVHLHIFRGLYHASYSspREFVWCLGVVIFLLMILTAFTGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWG 166
Cdd:MTH00022  88 LFFLCLYIHIGRGLYYGGYL--KFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWG 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096 167 GFSVDNATLNRFFSLHHLLPFILVGASLLHLAALHQYGSNNPLGVHSEMDKIAFYPYFYVKDLVGWVAFAIFFSIWIFYA 246
Cdd:MTH00022 166 GFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFA 245


                 ....*....
gi 151368096 247 PNVLGHPDN 255
Cdd:MTH00022 246 PNLLGDPEN 254
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
7-255 2.33e-109

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 320.58  E-value: 2.33e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096   7 PISSILNQHLiDYPTPSNLSYWWGFGSLAGICLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLRYMHANGAS 86
Cdd:COG1290   19 PLASLVREHL-EYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096  87 MFLIVVHLHIFRGLYHASYSSPREFVWCLGVVIFLLMILTAFTGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWG 166
Cdd:COG1290   98 LFFAAVYLHMFRGFFYGAYKKPRELNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096 167 GFSVDNATLNRFFSLH-HLLPFILVGASLLHLAALHQYGSNNPLGVHSE----MDKIAFYPYFYVKDLVGWVAFAIFFSI 241
Cdd:COG1290  178 GEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKktekVDGVPFHPYYTVKDGFGFFVFLGVFAL 257

                        250
                 ....*....|....
gi 151368096 242 WIFYAPNvlGHPDN 255
Cdd:COG1290  258 LAFFFPI--NPPPN 269
CYTB MTH00224
cytochrome b; Provisional
 1-255 2.10e-104

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 307.62  E-value: 2.10e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096   1 FSPLKQ--PISSILNQHLIDYPTPSNLSYWWGFGSLAGICLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLR 78
Cdd:MTH00224   2 FKPFRTthPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096  79 YMHANGASMFLIVVHLHIFRGLYHASYSSPRefVWCLGVVIFLLMILTAFTGYVLPWGQMSFWGATVITSLASAIPVVGD 158
Cdd:MTH00224  82 SIHANGASMFFLFIYLHVGRGLYYGSFNLSE--TWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGK 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096 159 TIVTWLWGGFSVDNATLNRFFSLHHLLPFILVGASLLHLAALHQYGSNNPLGVHSEMDKIAFYPYFYVKDLVGWVAFAIF 238
Cdd:MTH00224 160 DLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILL 239

                        250
                 ....*....|....*..
gi 151368096 239 FSIWIFYAPNVLGHPDN 255
Cdd:MTH00224 240 LSLMVLFEPNLFTDPEN 256
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 7-206 3.69e-96

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 280.02  E-value: 3.69e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096   7 PISSILNQHLIDYPTPSNLSYWWGFGSLAGICLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLRYMHANGAS 86
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096  87 MFLIVVHLHIFRGLYHASYSSPREFVWCLGVVIFLLMILTAFTGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWG 166
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKKPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 151368096 167 GFSVDNATLNRFFSLHHLLPFILVGASLLHLAALHQYGSN 206
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
16-204 7.93e-86

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 253.46  E-value: 7.93e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096   16 LIDYPTPSNLSYWWGFGSLAGICLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLRYMHANGASMFLIVVHLH 95
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096   96 IFRGLYHASYSSPREFVWCLGVVIFLLMILTAFTGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATL 175
Cdd:pfam00033  81 IFRGLYYGGFSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 151368096  176 NRFFSLHHLLPFILVGASLLHLAALHQYG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
CYTB MTH00033
cytochrome b; Provisional
 16-241 9.35e-86

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 260.26  E-value: 9.35e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096  16 LIDYPTPSNLSYWWGFGSLAGICLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLRYMHANGASMFLIVVHLH 95
Cdd:MTH00033  15 IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCH 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096  96 IFRGLYHASYSspREFVWCLGVVIFLLMILTAFTGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATL 175
Cdd:MTH00033  95 IGRGLYYGGYS--RVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 151368096 176 NRFFSLHHLLPFILVGASLLHLAALHQYGSNNPLGVHSEMDKIAFYPYFYVKDLVGWVAFAIFFSI 241
Cdd:MTH00033 173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVI 238
CYTB MTH00086
cytochrome b; Provisional
 10-255 6.67e-82

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 249.47  E-value: 6.67e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096  10 SILNQHLIDYPTPSNLSYWWGFGSLAGICLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLRYMHANGASMFL 89
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096  90 IVVHLHIFRGLYHASYSspREFVWCLGVVIFLLMILTAFTGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFS 169
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYR--LKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFG 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096 170 VDNATLNRFFSLHHLLPFILVGASLLHLAALHQYGSNNPLGVHSEMDKIAFYPYFYVKDLVGWVAFAIFFsIWIFYAPNV 249
Cdd:MTH00086 159 VSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLVFI-IFSLFYPFN 237


                 ....*.
gi 151368096 250 LGHPDN 255
Cdd:MTH00086 238 LGDPEM 243
CYTB MTH00046
cytochrome b; Validated
 10-250 6.29e-59

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 190.58  E-value: 6.29e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096  10 SILNQHLIDYPTPSNLSYWWGFGSLAGICLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLRYMHANGASMFL 89
Cdd:MTH00046   3 SLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096  90 IVVHLHIFRGLYHASYSspREFVWCLGVVIFLLMILTAFTGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFS 169
Cdd:MTH00046  83 ILLFIHMGRALYYSSYS--KKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096 170 VDNATLNRFFSLHHLLPFILVGASLLHLAALHQYGSNNPLGV-HSEMDKIAFYPYFYVKDLVGWVAFAIFFSIWIFYAPN 248
Cdd:MTH00046 161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240


                 ..
gi 151368096 249 VL 250
Cdd:MTH00046 241 LV 242
PRK03735 PRK03735
cytochrome b6; Provisional
 31-209 3.27e-48

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 158.72  E-value: 3.27e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096  31 FGSLAGICLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLRYMHANGASMFLIVVHLHIFRGLYHASYSSPRE 110
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRE 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096 111 FVWCLGVVIFLLMILTAFTGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLH-HLLPFIL 189
Cdd:PRK03735 124 LNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                        170       180
                 ....*....|....*....|
gi 151368096 190 VGASLLHLAALHQYGSNNPL 209
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGPL 223
cytb_ExtP NF040969
selenite/tellurite reduction operon b-type cytochrome ExtP;
26-196 1.50e-45

selenite/tellurite reduction operon b-type cytochrome ExtP;


Pssm-ID: 468899  Cd Length: 205  Bit Score: 151.29  E-value: 1.50e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096  26 SYWWGFGSLAGICLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLRYMHANGASMFLIVVHLHIFRGLYHASY 105
Cdd:NF040969  22 SYTWCLGGLTFLLFVILTVTGIFLMFYYVPTPEAAYESVQYLQNEVAFGQLVRNMHHWAANLMVVMVFLHMLRVFYTGSY 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096 106 SSPREFVWCLGVVIFLLMILTAFTGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSLH-HL 184
Cdd:NF040969 102 KPPREFNWVVGVGLLVLTLGLSFTGYLLPWDQLAYWAVTVGTNIAGSIPVVGTLLQLLQLGGSEVGAATLTRFYALHvFV 181

                        170
                 ....*....|..
gi 151368096 185 LPFILVGASLLH 196
Cdd:NF040969 182 LPAALIILMAAH 193
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
86-253 7.52e-44

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 145.85  E-value: 7.52e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096   86 SMFLIVVHLHIFRGLYHASYSSPREFVWCLGVVIFLLMILTAFTGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLW 165
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRELNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096  166 GGFSVDNATLNRFFSLH-HLLPFILVGASLLHLAALHQYGSNNPLGVHSEMDKIAFYPYFYVKDLVGWVAFAIFFSIWIF 244
Cdd:pfam13631  81 GGPFPGTATIPRFYALHiLLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 151368096  245 YAPNVLGHP 253
Cdd:pfam13631 161 INPIWLGGP 169
petB CHL00070
cytochrome b6
 22-209 2.51e-40

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 138.31  E-value: 2.51e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096  22 PSNLSYWWGFGSLAGICLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLRYMHANGASMFLIVVHLHIFRGLY 101
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 151368096 102 HASYSSPREFVWCLGVVIFLLMILTAFTGYVLPWGQMSFWGATVITSLASAIPVVGDTIVTWLWGGFSVDNATLNRFFSL 181
Cdd:CHL00070 107 TGGFKKPRELTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                        170       180
                 ....*....|....*....|....*....
gi 151368096 182 H-HLLPFILVGASLLHLAALHQYGSNNPL 209
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 207-255 1.93e-13

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 65.74  E-value: 1.93e-13
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 151368096 207 NPLGVHSEMDKIAFYPYFYVKDLVGWVAFAIFFSIWIFYAPNVLGHPDN 255
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDN 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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