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Conserved domains on  [gi|156152631|gb|ABU54567|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Oligosoma suteri]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 super family cl33352
NADH dehydrogenase subunit 2; Provisional
 1-183 1.51e-91

NADH dehydrogenase subunit 2; Provisional


The actual alignment was detected with superfamily member MTH00112:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 270.54  E-value: 1.51e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631   1 PVILSLMLTSLAMGTIITMSSTHWLMAWVGLELNTLSIIPIITKHHYPRSTEAATKYFLTQAAASAMLLFASTTNAWHTG 80
Cdd:MTH00112   3 PHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  81 TWDISQLTNHPACIMLTMALAMKLGLAPLHFWLPEVLQGAPLSTALIITTWQKLAPMALMLLTHSSLNPAILMTLGLLSA 160
Cdd:MTH00112  83 QWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILST 162

                        170       180
                 ....*....|....*....|...
gi 156152631 161 LVGGWGGLNQTQTRKIMAFSSIA 183
Cdd:MTH00112 163 LIGGWGGLNQTQLRKIMAFSSIA 185
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-183 1.51e-91

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 270.54  E-value: 1.51e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631   1 PVILSLMLTSLAMGTIITMSSTHWLMAWVGLELNTLSIIPIITKHHYPRSTEAATKYFLTQAAASAMLLFASTTNAWHTG 80
Cdd:MTH00112   3 PHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  81 TWDISQLTNHPACIMLTMALAMKLGLAPLHFWLPEVLQGAPLSTALIITTWQKLAPMALMLLTHSSLNPAILMTLGLLSA 160
Cdd:MTH00112  83 QWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILST 162

                        170       180
                 ....*....|....*....|...
gi 156152631 161 LVGGWGGLNQTQTRKIMAFSSIA 183
Cdd:MTH00112 163 LIGGWGGLNQTQLRKIMAFSSIA 185
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 5-183 8.75e-22

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 91.33  E-value: 8.75e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631   5 SLMLTSLAmGTIITMSSTHWLMAWVGLELNTLSIIPIIT-KHHYPRSTEAATKYFLTQAAASAMLLFASTTNAWHTGTWD 83
Cdd:COG1007  106 ALLLFATL-GMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLN 184

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  84 ISQLTNH------------PACIMLTMALAMKLGLAPLHFWLPEVLQGAPLSTALIITTWQKLAPMALML-LTHSSLNPA 150
Cdd:COG1007  185 LAGIAAAlaaggansplllLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLrLLVEAFPGL 264

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 156152631 151 ------ILMTLGLLSALVGGWGGLNQTQTRKIMAFSSIA 183
Cdd:COG1007  265 aadwqlLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIA 303
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 21-183 7.74e-20

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 84.29  E-value: 7.74e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631   21 STHWLMAWVGLELNTLSIIPIITKHHY-PRSTEAATKYFLTQAAASAMLLFASTTNAWHTGTWDISQLTNHP-------- 91
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKsPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALtgglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631   92 ---ACIMLTMALAMKLGLAPLHFWLPEVLQGAPLS-TALIITTWQKLAPMALM---LLTHSSLNPA--ILMTLGLLSALV 162
Cdd:pfam00361  81 lllLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLIrrsLLYLPSSPFIqqILLILAIISMLL 160

                         170       180
                  ....*....|....*....|.
gi 156152631  163 GGWGGLNQTQTRKIMAFSSIA 183
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSIS 181
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 5-183 3.11e-17

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 78.07  E-value: 3.11e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631    5 SLMLTSLAmGTIITMSSTHWLMAWVGLELNTLSIIPIIT-KHHYPRSTEAATKYFLTQAAASAMLLFASTTNAWHTGTWD 83
Cdd:TIGR01770 106 ILLLFALL-GIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLN 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631   84 ISQLTNHPACIMLT------------MALAMKLGLAPLHFWLPEVLQGAPLSTALIITTWQKLAPMALML-------LTH 144
Cdd:TIGR01770 185 FEDLLLFLSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGF 264

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 156152631  145 SSLNPAILMTLGLLSALVGGWGGLNQTQTRKIMAFSSIA 183
Cdd:TIGR01770 265 SEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSIS 303
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-183 1.51e-91

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 270.54  E-value: 1.51e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631   1 PVILSLMLTSLAMGTIITMSSTHWLMAWVGLELNTLSIIPIITKHHYPRSTEAATKYFLTQAAASAMLLFASTTNAWHTG 80
Cdd:MTH00112   3 PHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  81 TWDISQLTNHPACIMLTMALAMKLGLAPLHFWLPEVLQGAPLSTALIITTWQKLAPMALMLLTHSSLNPAILMTLGLLSA 160
Cdd:MTH00112  83 QWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILST 162

                        170       180
                 ....*....|....*....|...
gi 156152631 161 LVGGWGGLNQTQTRKIMAFSSIA 183
Cdd:MTH00112 163 LIGGWGGLNQTQLRKIMAFSSIA 185
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-183 6.71e-88

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 261.28  E-value: 6.71e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631   1 PVILSLMLTSLAMGTIITMSSTHWLMAWVGLELNTLSIIPIITKHHYPRSTEAATKYFLTQAAASAMLLFASTTNAWHTG 80
Cdd:MTH00135   3 PYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  81 TWDISQLTNHPACIMLTMALAMKLGLAPLHFWLPEVLQGAPLSTALIITTWQKLAPMALMLLTHSSlNPAILMTLGLLSA 160
Cdd:MTH00135  83 QWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTST 161

                        170       180
                 ....*....|....*....|...
gi 156152631 161 LVGGWGGLNQTQTRKIMAFSSIA 183
Cdd:MTH00135 162 LVGGWGGLNQTQLRKILAYSSIA 184
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-183 4.08e-87

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 259.47  E-value: 4.08e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631   1 PVILSLMLTSLAMGTIITMSSTHWLMAWVGLELNTLSIIPIITKHHYPRSTEAATKYFLTQAAASAMLLFASTTNAWHTG 80
Cdd:MTH00070   3 PYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  81 TWDISQLTNHPACIMLTMALAMKLGLAPLHFWLPEVLQGAPLSTALIITTWQKLAPMALMLLTHSSLNPAILMTLGLLSA 160
Cdd:MTH00070  83 EWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLST 162

                        170       180
                 ....*....|....*....|...
gi 156152631 161 LVGGWGGLNQTQTRKIMAFSSIA 183
Cdd:MTH00070 163 LIGGWGGLNQTQLRKIMAYSSIA 185
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-183 1.87e-81

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 245.14  E-value: 1.87e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631   1 PVILSLMLTSLAMGTIITMSSTHWLMAWVGLELNTLSIIPIITKHHYPRSTEAATKYFLTQAAASAMLLFASTTNAWHTG 80
Cdd:MTH00105   3 PLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  81 TWDISQLTNHPACIMLTMALAMKLGLAPLHFWLPEVLQGAPLSTALIITTWQKLAPMALMLLTHSSLNPAILMTLGLLSA 160
Cdd:MTH00105  83 QWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSI 162

                        170       180
                 ....*....|....*....|...
gi 156152631 161 LVGGWGGLNQTQTRKIMAFSSIA 183
Cdd:MTH00105 163 LIGGWGGLNQTQLRKILAYSSIA 185
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 3-183 1.37e-69

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 214.79  E-value: 1.37e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631   3 ILSLMLTSLAMGTIITMSSTHWLMAWVGLELNTLSIIPIITKHHYPRSTEAATKYFLTQAAASAMLLFASTTNAWHTGTW 82
Cdd:MTH00041   5 VLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSW 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  83 DISQLTNHPACIMLTMALAMKLGLAPLHFWLPEVLQGAPLSTALIITTWQKLAPMALMLLTHSSLNPAILMTLGLLSALV 162
Cdd:MTH00041  85 SINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLV 164

                        170       180
                 ....*....|....*....|.
gi 156152631 163 GGWGGLNQTQTRKIMAFSSIA 183
Cdd:MTH00041 165 GGWGGLNQTQTRKILAFSSIA 185
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-183 5.56e-65

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 202.89  E-value: 5.56e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631   1 PVILSLMLTSLAMGTIITMSSTHWLMAWVGLELNTLSIIPIITKHHYPRSTEAATKYFLTQAAASAMLLFASTTNAWHTG 80
Cdd:MTH00200   3 PLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  81 TWDISQLTNHPACIMLTMALAMKLGLAPLHFWLPEVLQGAPLSTALIITTWQKLAPMALMLLTHSSLNPAILMTLGLLSA 160
Cdd:MTH00200  83 QWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSV 162

                        170       180
                 ....*....|....*....|...
gi 156152631 161 LVGGWGGLNQTQTRKIMAFSSIA 183
Cdd:MTH00200 163 LVGGWGGLNQTQLRKILAYSSIA 185
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 6-182 2.38e-42

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 144.20  E-value: 2.38e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631   6 LMLTSLAMGTIITMSSTHWLMAWVGLELNTLSIIPIITKHHYPRSTEAATKYFLTQAAASAMLLFASTTNAWhtgtwdIS 85
Cdd:MTH00160   9 LFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML------NL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  86 QLTNHPACIMLTMALAMKLGLAPLHFWLPEVLQGAPLSTALIITTWQKLAPMALMLLTHSSLnpaILMTLGLLSALVGGW 165
Cdd:MTH00160  83 MLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNN---FIIIIIILSAIIGAI 159

                        170
                 ....*....|....*..
gi 156152631 166 GGLNQTQTRKIMAFSSI 182
Cdd:MTH00160 160 GGLNQTSLRKILAYSSI 176
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 3-183 2.76e-41

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 141.18  E-value: 2.76e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631   3 ILSLMLtsLAMGTIITMSSTHWLMAWVGLELNTLSIIPIITKHHYPRSTEAATKYFLTQAAASAMLLFASTTNAWHTGTW 82
Cdd:MTH00144   7 LLFLFL--MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  83 DISqltnhpacIMLTMALAMKLGLAPLHFWLPEVLQGAPLSTALIITTWQKLAPMALMLLTHSSLNPA-ILMTLGLLSAL 161
Cdd:MTH00144  85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAyLLCVISVLSAL 156

                        170       180
                 ....*....|....*....|..
gi 156152631 162 VGGWGGLNQTQTRKIMAFSSIA 183
Cdd:MTH00144 157 VGSIGGLNQTQVRALLAYSSIS 178
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 4-182 1.01e-33

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 121.81  E-value: 1.01e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631   4 LSLMLTSLAMGTIITMSSTHWLMAWVGLELNTLSIIPIITKHHYPRSTEAATKYFLTQAAASAMLLFASTTnawhtgTWD 83
Cdd:MTH00011   8 MFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWS 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  84 ISQLTNHPACIMLTMALAMKLGLAPLHFWLPEVLQGAPLSTALIITTWQKLAPMALMLLTHSSLNPAILMTLGLLSALVG 163
Cdd:MTH00011  82 FPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAG 161

                        170
                 ....*....|....*....
gi 156152631 164 GWGGLNQTQTRKIMAFSSI 182
Cdd:MTH00011 162 GLGGMNQTQLRPLLAYSSI 180
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 5-182 1.08e-27

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 105.52  E-value: 1.08e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631   5 SLMLTSLAMGTIITMSSTHWLMAWVGLELNTLSIIPIITKHHYPRSTEAATKYFLTQAAASAMLLFASTTNAWHTGTWDI 84
Cdd:MTH00197   1 FLFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLSLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  85 SqltnhpaCIMLTMALAMKLGLAPLHFWLPEVLQGAPLSTALIITTWQKLAPmaLMLLTHSSLNPAILMTLGLLSALVGG 164
Cdd:MTH00197  81 S-------VVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAP--LLILAFNSSSFMGLLICSVLSSLIGG 151

                        170
                 ....*....|....*...
gi 156152631 165 WGGLNQTQTRKIMAFSSI 182
Cdd:MTH00197 152 IGGMNQSNIRQLLAYSSI 169
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 5-183 8.75e-22

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 91.33  E-value: 8.75e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631   5 SLMLTSLAmGTIITMSSTHWLMAWVGLELNTLSIIPIIT-KHHYPRSTEAATKYFLTQAAASAMLLFASTTNAWHTGTWD 83
Cdd:COG1007  106 ALLLFATL-GMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLN 184

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  84 ISQLTNH------------PACIMLTMALAMKLGLAPLHFWLPEVLQGAPLSTALIITTWQKLAPMALML-LTHSSLNPA 150
Cdd:COG1007  185 LAGIAAAlaaggansplllLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLrLLVEAFPGL 264

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 156152631 151 ------ILMTLGLLSALVGGWGGLNQTQTRKIMAFSSIA 183
Cdd:COG1007  265 aadwqlLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIA 303
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
5-183 3.18e-21

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 89.49  E-value: 3.18e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631   5 SLMLTSLAmGTIITMSSTHWLMAWVGLELNTLSIIPIITKH-HYPRSTEAATKYFLTQAAASAMLLFASTTNAWHTGTWD 83
Cdd:PRK05777 107 LLVLFALL-GMMVMVSANDLLTLFLGLELLSLPLYALAALRrDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLS 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  84 ISQL--------TNHP----ACIMLTMALAMKLGLAPLHFWLPEVLQGAPLSTALIITTWQKLAPMALML-LTHSSLNPA 150
Cdd:PRK05777 186 FAGIakaladgsGNSLlllfGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLrLLVVAFGGL 265

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 156152631 151 ------ILMTLGLLSALVGGWGGLNQTQTRKIMAFSSIA 183
Cdd:PRK05777 266 sedwqqVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIA 304
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 11-183 2.77e-20

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 86.24  E-value: 2.77e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  11 LAMGTIITMSSTHWLMAWVGLELNTLSI-IPIITKHHYPRSTEAATKYFLTQAAASAMLLFASTTNAWHTGTWDIS--QL 87
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLfILIAQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLSyiNL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  88 TNHPAC-----------IMLTMALAMKLGLAPLHFWLPEVLQGAPLSTALIITTWQKLAPMALMLLTHSSLNpaILMTLG 156
Cdd:MTH00196  82 VLNSGQsfssvsvpigyLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGG 159

                        170       180
                 ....*....|....*....|....*..
gi 156152631 157 LLSALVGGWGGLNQTQTRKIMAFSSIA 183
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIG 186
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 21-183 7.74e-20

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 84.29  E-value: 7.74e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631   21 STHWLMAWVGLELNTLSIIPIITKHHY-PRSTEAATKYFLTQAAASAMLLFASTTNAWHTGTWDISQLTNHP-------- 91
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKsPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALtgglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631   92 ---ACIMLTMALAMKLGLAPLHFWLPEVLQGAPLS-TALIITTWQKLAPMALM---LLTHSSLNPA--ILMTLGLLSALV 162
Cdd:pfam00361  81 lllLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLIrrsLLYLPSSPFIqqILLILAIISMLL 160

                         170       180
                  ....*....|....*....|.
gi 156152631  163 GGWGGLNQTQTRKIMAFSSIA 183
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSIS 181
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 11-182 1.71e-19

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 84.68  E-value: 1.71e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  11 LAMGTIITMSSTHWLMAWVGLELNTLSI-IPIITKHHYPRSTEAATKYFLTQAAASAMLLFASTTNAWHTGTWDI----S 85
Cdd:MTH00199 106 VALGSLLLVSSINWLSIYLAIELQTLTLfILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginS 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  86 QLTNHPACIMLTMALAMKLGLAPLHFWLPEVLQGAPLSTALIITTWQKLAPMALMLLTHSSLNpaILMTLGLLSALVGGW 165
Cdd:MTH00199 186 ILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLSIIYGAI 263

                        170
                 ....*....|....*..
gi 156152631 166 GGLNQTQTRKIMAFSSI 182
Cdd:MTH00199 264 GALNQTKIKRLLAYSGI 280
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 5-183 3.11e-17

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 78.07  E-value: 3.11e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631    5 SLMLTSLAmGTIITMSSTHWLMAWVGLELNTLSIIPIIT-KHHYPRSTEAATKYFLTQAAASAMLLFASTTNAWHTGTWD 83
Cdd:TIGR01770 106 ILLLFALL-GIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLN 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631   84 ISQLTNHPACIMLT------------MALAMKLGLAPLHFWLPEVLQGAPLSTALIITTWQKLAPMALML-------LTH 144
Cdd:TIGR01770 185 FEDLLLFLSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGF 264

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 156152631  145 SSLNPAILMTLGLLSALVGGWGGLNQTQTRKIMAFSSIA 183
Cdd:TIGR01770 265 SEAWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSIS 303
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 11-182 5.33e-14

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 69.12  E-value: 5.33e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  11 LAMGTIITMSSTHWLMAWVGLELNTLSIIPIITKHHYPRST---------EAATKYFLTQAAASAMLLFASTTNAWHTG- 80
Cdd:MTH00198 197 VGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGn 276

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  81 -------------TWDISQLTNHPACIMLTMALAMKLGLAPLHFWLPEVLQGAPLSTALIITTWQKLapMALMLLTHSSL 147
Cdd:MTH00198 277 egmlgtilsatleTTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVI 354

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 156152631 148 NPAILMTLGLLSALVGGWGGLNQTQTRKIMAFSSI 182
Cdd:MTH00198 355 TSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGI 389
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 28-183 1.02e-13

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 67.86  E-value: 1.02e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  28 WVGLELNTLSIIPIITKHHYPRSTEAATKYFLTQAAASAMLLFASTTNAWHTGTWDISQLTN----------HPACIMLT 97
Cdd:COG0651  133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAArlaeldpgllLAAFALLL 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  98 MALAMKLGLAPLHFWLPEVLQGAP------LSTAL-------IITTWQKLAPMALMLLTHsslnpAILMTLGLLSALVGG 164
Cdd:COG0651  213 VGFGIKAALFPLHFWLPDAYPAAPspvsalLSGLLtkvgvyaILRVLTLLFGADPALFLG-----TLLLVLGLLTMLVGA 287

                        170
                 ....*....|....*....
gi 156152631 165 WGGLNQTQTRKIMAFSSIA 183
Cdd:COG0651  288 LGALAQRDLKRLLAYSSVS 306
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 47-183 2.97e-08

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 52.39  E-value: 2.97e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  47 YPRSTEAATKYFLTQAAASAMLLFASTTNAWHTG--TWDISQLTNHP--------ACIMLTMALAMKLGLAPLHFWLPEV 116
Cdd:COG1008  156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGalTFDIAELAAAPlpltaqllLFLAFFIAFAVKVPMFPFHTWLPDA 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631 117 LQGAPLSTALIittwqkLAP------------MALMLLTHSSLNPA-ILMTLGLLSALVGGWGGLNQTQTRKIMAFSSIA 183
Cdd:COG1008  236 HVEAPTAGSVL------LAGvllkmggygllrFALPLFPEASAYFApLLAALGVIGIIYGALVALAQTDLKRLIAYSSVS 309
ndhB CHL00049
NADH dehydrogenase subunit 2
 49-183 1.06e-07

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 50.77  E-value: 1.06e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  49 RSTEAATKYFLTQAAASAMLLFASTtnaW-------HTGTWDI------SQLTNHPAC----IMLTMALAMKLGLAPLHF 111
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVYGFS---WlyglsggEIELQEIvnglinTQMYNSPGIsialIFITVGIGFKLSLAPFHQ 235

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 156152631 112 WLPEVLQGAPLSTALIITTWQKLAPMALMLLTHSSLNPA-------ILMTLGLLSALVGGWGGLNQTQTRKIMAFSSIA 183
Cdd:CHL00049 236 WTPDVYEGSPTPVVAFLSVTSKVAASALATRIFDIPFYFssnewhlLLEILAILSMILGNLIAITQTSMKRMLAYSSIG 314
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
48-183 1.83e-07

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 50.05  E-value: 1.83e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  48 PRSTEAATKYFLTQAAASAMLLFAST----TNAWHTGTWDISQ-LTNHP---ACIMLTMALA---MKLGLAPLHFWLPEV 116
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYGSSllygLSGGSTQLSAIALaLITSPslgLALALVFVIAgiaFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 156152631 117 LQGAPLSTALIITTWQKLAPMALMLLTHSSLNPA-------ILMTLGLLSALVGGWGGLNQTQTRKIMAFSSIA 183
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAGFALAIRLLVTAFPSfdeqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIG 310
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 53-183 1.36e-06

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 47.24  E-value: 1.36e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631   53 AATKYFLTQAAASAMLLFASTTNAW-HTGTWDISQLTNHP--------ACIMLTMALAMKLGLAPLHFWLPEVLQGAPLS 123
Cdd:TIGR01972 157 AAMKFFLYTLAGSLLMLLAILGLYFlGGGTFDLLELLNLPlpfgvqtwLFLAFFIAFAVKVPLFPLHTWLPDAHVEAPTA 236

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 156152631  124 TALIIT-TWQKLAPMALM-----LLTHSSLNPA-ILMTLGLLSALVGGWGGLNQTQTRKIMAFSSIA 183
Cdd:TIGR01972 237 GSVILAgVLLKMGTYGFLrfnlpLFPDASLYFApVLAALGVIAIIYGALIALAQTDIKRLIAYSSIS 303
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 28-182 2.10e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 47.01  E-value: 2.10e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  28 WVGLELNTLSIIPIITKHHY-PRSTEAATKYFLTQAAASAMLLFASTTNAWHTGTWDISQL----------TNHPACIML 96
Cdd:PRK08376 147 FVFLEIMSIASYALVAFRNDtWEAIEAGIKYMFVGSLASSMVLLGIALLYGQYGTLNMAYLavkmsenptvVAKIALALF 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  97 TMALAMKLGLAPLHFWLPEVLQGAP--LSTALIITTWQKLAPMALMLLT--HSSLNPA----ILMTLGLLSALVGGWGGL 168
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPDAYPAAPssISAMLLVIKQAGLYALARVLFSiyGPAINLAtvgwVIIILGCLTMFVGVAMAV 306

                        170
                 ....*....|....
gi 156152631 169 NQTQTRKIMAFSSI 182
Cdd:PRK08376 307 VQKDVKRLLAYHSV 320
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 29-183 2.19e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 46.80  E-value: 2.19e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  29 VGLELNTLSIIPIITKHHYPRSTEAATKYFLTQAAASAMLLFASTTNAWHTGTWDISQLTNHP--------ACIMLTMAL 100
Cdd:PRK08375 133 VFLEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGALaenptvvtAFGFVLLAL 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631 101 AMKLGLAPLHFWLPEVLQGA-PLSTALIITTWQKLAPMALMLLTHSSLNPA---------ILMTLGLLSALVGGWGGLNQ 170
Cdd:PRK08375 213 ALKAAVFPLHTWLPRAYPAApPVVTALLSGLVTKVAVYALIRIYFTVFGGDfrfalglgwLLAVLALLSMLVGSLAALGQ 292

                        170
                 ....*....|...
gi 156152631 171 TQTRKIMAFSSIA 183
Cdd:PRK08375 293 DDVKRVLAYSTVS 305
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 4-183 3.76e-05

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 43.06  E-value: 3.76e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631   4 LSLMLTSlamGTIITMSSTHWLMAWVGLELNTLS---IIPIITKhhypRSTEAATKYFLTQAAASAMLLFASTTNAWHTG 80
Cdd:PRK08668 103 FALMSLA---GVLGVFLANDLLTLYIFWEIMTFSsfmMVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTG 175

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  81 TWDISQLTNH-----------PACIMLTMALAMKLGLAPLHFWLPEVLQGAP--------------------LSTALIIT 129
Cdd:PRK08668 176 TFDFADISQGlindtstgfalIVFLFLLAFGVAKAGIFPLHVWAPDAYSEAPqsfsavlsgqlsklgaygflLVLYVLPG 255

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 156152631 130 TwqKLAPMALMLLTHSSLNpAILMTLGLLSALVGGWGGLNQTQTRKIMAFSSIA 183
Cdd:PRK08668 256 T--KLFSEFGTYRGVPLFN-YILAWLGNISIIVGTLMAILQEDIKKLIAYSSVA 306
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 36-183 4.99e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 42.88  E-value: 4.99e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  36 LSIIP---IITKHHYPRSTEAATKYFLTQAAASAMLLFA----STTNAWHTGTWDISQLTNHPAC------IMLT--MAL 100
Cdd:PRK05846 142 AMLIPmyfLIGVWGGKNRIYAATKFFLYTLLGSLLMLVAiiylVVVYYNATGTFDIADLLNLPLPpgvqywLFLAffIAF 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631 101 AMKLGLAPLHFWLPEVLQGAPLSTALIittwqkLAPMALMLLTH-------------SSLNPAILMTLGLLSALVGGWGG 167
Cdd:PRK05846 222 AVKMPMFPLHTWLPDAHVQAPTAGSVL------LAGILLKMGAYgllrfslplfpdaSHEFAPIIITLGVIAIIYGALVA 295

                        170
                 ....*....|....*.
gi 156152631 168 LNQTQTRKIMAFSSIA 183
Cdd:PRK05846 296 LAQTDIKKLIAYSSIS 311
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 45-183 9.83e-05

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 42.06  E-value: 9.83e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  45 HHYPRSTEAATKYFLTQAAASAMLLFASTTNAWHTGTWDISQLTNH-----------PACIMLTMALAMKLGLAPLHFWL 113
Cdd:COG1009  155 YEKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAAaptilssplltLILLLLLLGAFGKSAQFPLHFWL 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631 114 PEVLQG-APLS---------TA---LIIttwqKLAPmalmLLTHSSLNPAILMTLGLLSALVGGWGGLNQTQTRKIMAFS 180
Cdd:COG1009  235 PDAMEGpTPVSallhaatmvKAgvyLLA----RLSP----LFALSPVWLTVVAIIGAITALFAALIALAQTDIKRVLAYS 306


                 ...
gi 156152631 181 SIA 183
Cdd:COG1009  307 TVS 309
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
 4-182 7.00e-04

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 39.39  E-value: 7.00e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631   4 LSLMLTSLAMGTIITMSSTHWLMAWVGLELNTLSIIPIITKHhypRSTEAATKYFLTQAAASAMLLFASTTNAWH-TGTW 82
Cdd:PRK06459  74 LSSLYILTILGMAIVLTSDNYLLFLAGWEIMTIPSYVAIALT---KKNKRPAFVFMAFGELSTVLILAGFAWAFIiSGTT 150

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  83 DISQLTNHPACIMLTMALAMKLGLAPLHF--WLPEVLQGAPLSTALIITTWQKLAPMALML--LTHSSLNPA-----ILM 153
Cdd:PRK06459 151 NFSYLPSPVPLILASFGFIIKMGMMPFLVseWLPIAHGNAPSNFSAILSATMTLMGVYGILkmTILTQTIPIgyfglTIL 230

                        170       180
                 ....*....|....*....|....*....
gi 156152631 154 TLGLLSALVGGWGGLNQTQTRKIMAFSSI 182
Cdd:PRK06459 231 AIGAFSILFGALYAYVSENVKGLLAFSTI 259
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 36-182 8.62e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 39.33  E-value: 8.62e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  36 LSIIPIITKHHYPRSTEAATKYFLTQAAASAMLLFASTTNAWHTGTWDISQLTNHPACIMLT-----MALAMKLGLAPLH 110
Cdd:PRK08667 146 SSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAGILSLVflllfLGFGIKAGIIPFH 225

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 156152631 111 FWLPEVLQGAPLS-TALIITTWQKLAPMALMLLTHSSLNPAI-----LMTLGLLSALVGGWGGLNQTQTRKIMAFSSI 182
Cdd:PRK08667 226 KWLPYAHPASPSNvSALMSGVMLKVAVYGLVRFLMDVLSPELwwgvlILLAGSISALLGVIYALKEHDLKGLLAYSSI 303
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 7-182 1.10e-03

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 38.76  E-value: 1.10e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631   7 MLTSLAMGTIITMssthwlmaWVGLELNTLSIIPIITKHHYPRSTEAATKYFLTQAAASAMLLF--------ASTTNAWH 78
Cdd:PRK06458 121 MLLALTSNNLGLM--------WVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFgtilvyanAATVMGDG 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  79 TGTWDISQLTNH-----PACIMLTMALAM-----KLGLAPLHFWLPE-----------VLQGAPLSTAL-IITTWQKLAP 136
Cdd:PRK06458 193 EMAILWTELLKHaslldPTLMKLAFVFLLigfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALyAVLRYYILID 272

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 156152631 137 MALmlltHSSLNPAILMTLGLLSALVGGWGGLNQTQTRKIMAFSSI 182
Cdd:PRK06458 273 AAI----GSDFPGRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSI 314
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 94-179 1.55e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 38.41  E-value: 1.55e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  94 IMLTMALAMKLGLAPLHFWLPEVLQGAP-LSTALIITTWQKLAPMAlMLLTHSSLNPA-----ILMTLGLLSALVGGWGG 167
Cdd:PRK12665 213 AVLLVAFGIKAAVFPLSFWLPDSYPTAPaPVTAVFAGLLTKVGVYA-IIRTHTLLFPGggldtLLMVVALLTMVVGILGA 291

                         90
                 ....*....|..
gi 156152631 168 LNQTQTRKIMAF 179
Cdd:PRK12665 292 IAQSDIKRLLSF 303
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 53-183 1.71e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 38.09  E-value: 1.71e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  53 AATKYFLTQAAASAMLLFASTTNAWHTG--TWDISQLTNHPACIMLTM--------ALAMKLGLAPLHFWLPEV--LQGA 120
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDtfTFDLAELGAKSYPLALELllyagfliAFGVKLPIFPLHTWLPDAhgEASA 217

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631 121 PLSTaLIITTWQKLAPMALMLL-------THSSLNPAiLMTLGLLSALVGGWGGLNQTQTRKIMAFSSIA 183
Cdd:PRK12561 218 PVSM-ILAGVLLKMGGYALIRFnvqmlpdAHVYFAPA-LAILGVVNIIYGALNAFAQDNVKRRLAYSSVS 285
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 28-182 1.93e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 38.20  E-value: 1.93e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  28 WVGLELNTLSIIPIITKHHYPRSTEAATKYFLTqaAASAML--------LFASTTNAWHTGTWDISQLTNHPACI---ML 96
Cdd:PRK08676 128 WIFAELTTVFSAMLIAILSARENIDAALKYIFI--ASTAMIfafiglifLFSLTRQALGTGTLNWTELAAHASLLspsVL 205

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  97 TMA-------LAMKLGLAPLHFWLPEVLQGAP-LSTALIITTWQKLAPMALM----LLTHSSLNP---AILMTLGLLSAL 161
Cdd:PRK08676 206 GASflfifigFLAKSGLVPFHTWLPAAYAKAPsVVSALLSGTVLNIGIYGILrlsaLLRQSGAAEqfsNVLIGLGIFSIA 285

                        170       180
                 ....*....|....*....|.
gi 156152631 162 VGGWGGLNQTQTRKIMAFSSI 182
Cdd:PRK08676 286 VAAFSMLSQRNLKKLIAFSSI 306
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 78-179 2.09e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 37.98  E-value: 2.09e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  78 HTGTWDISQLTNHP-------ACIMLTMALAM-KLGLAPLHFWLPEVLQG-APLSTALIITTWQK-----LAPMALMLLT 143
Cdd:PRK12644 183 AAGTYRLSELLADPptgpavsVAVVLILVGALsKSAIVPFHFWLPGAMAApTPVSAYLHAAAMVKagiylVARLAPGFAD 262

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 156152631 144 HSSLNPAILmTLGLLSALVGGWGGLNQTQTRKIMAF 179
Cdd:PRK12644 263 VPVWRPTVL-VLGLATMLLGGWRALRQHDLKLILAY 297
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
2-182 3.86e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 37.32  E-value: 3.86e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631   2 VILSLMLTSLAMGTIITMSSTHWLMaWVGLELNTLSIIPIITKHHYPRSTEAATKYFLTQAAASAMLLFASTTNAWHTGT 81
Cdd:PRK06277 101 LYVFLMLMGLASVSAIVLADDIFNL-YVFFEIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGT 179

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  82 WDISQ----LTNHPACIMLTMALAMKL-------GLAPLHFWLPEVLQGAPLSTALIITTWQKLAPMALML--------L 142
Cdd:PRK06277 180 LNITDihnaLLVNPTSPVIYGGLLLLIfgllygsGLPPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLvifklfggL 259

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 156152631 143 THSSLNPAILMTLGLLSALVGGWGGLNQTQTRKIMAFSSI 182
Cdd:PRK06277 260 SYFPSAQGVLIALSVLAMVFGVVMALLQTDYKRLLAYHAI 299
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 98-183 8.94e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 36.05  E-value: 8.94e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156152631  98 MALAMKLGLAPLHFWLPEVLQGAPLS-TALIITTWQKLAPMALMLLT-------HSSLNPAILmTLGLLSALVGGWGGLN 169
Cdd:MTH00226 238 LAMAVKIPIFPFHIWLPKAHVEAPVAgSVLLAGILLKLGGYGLVRLSwpilplgAQNLAPAVI-AMGIVGIVYGSFATCR 316

                         90
                 ....*....|....
gi 156152631 170 QTQTRKIMAFSSIA 183
Cdd:MTH00226 317 QIDVKRLVAYSSVA 330
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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