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Conserved domains on  [gi|156523733|gb|ABU68977|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Corythornis leucogaster]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 6.05e-157

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 443.49  E-value: 6.05e-157
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733   1 MNPHAKLISTLSLLLGTTITISSNHWMMAWTGLEINTLAIIPFISKTHHPRAIEATIKYFLVQATASALILFSSTINAWQ 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  81 TGQWDITQLTHPTSSALLTAAVAMKLGLVPFHFWFPEVLQGSPMTTALLLSTMMKFPPITLLLLTSHSLNHTLLTLMAVA 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 161 SAALGGWMGLNQTQLRKIMAFSSISHLGWMTIVILYHPKLTLMTFYLYTIMTSTVFLTFNTTKSLKLSTTMTSWTKTPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 241 NATLMLTLLSLAGLPPLTGFLPKWLITQELTKQEMTPTAMTIAMLSLLSLFFYLRLAYYSTITLPPNSTNHMKQWRTNKA 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 156523733 321 TNPSIALLATLSILLLPMSPMILTSI 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 6.05e-157

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 443.49  E-value: 6.05e-157
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733   1 MNPHAKLISTLSLLLGTTITISSNHWMMAWTGLEINTLAIIPFISKTHHPRAIEATIKYFLVQATASALILFSSTINAWQ 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  81 TGQWDITQLTHPTSSALLTAAVAMKLGLVPFHFWFPEVLQGSPMTTALLLSTMMKFPPITLLLLTSHSLNHTLLTLMAVA 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 161 SAALGGWMGLNQTQLRKIMAFSSISHLGWMTIVILYHPKLTLMTFYLYTIMTSTVFLTFNTTKSLKLSTTMTSWTKTPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 241 NATLMLTLLSLAGLPPLTGFLPKWLITQELTKQEMTPTAMTIAMLSLLSLFFYLRLAYYSTITLPPNSTNHMKQWRTNKA 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 156523733 321 TNPSIALLATLSILLLPMSPMILTSI 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-266 7.34e-33

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 127.15  E-value: 7.34e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  14 LLGTTITISSNHWMMAWTGLEINTLAIIPFIS-KTHHPRAIEATIKYFLVQATASALILFSSTINAWQTGQWDITQL--- 89
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAGIaaa 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  90 --THPTSSALLTAAVAM-------KLGLVPFHFWFPEVLQGSPMTTALLLSTMMK--------------FPPITLLLlts 146
Cdd:COG1007  192 laAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafaallrllveaFPGLAADW--- 268

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 147 hslnHTLLTLMAVASAALGGWMGLNQTQLRKIMAFSSISHLGWMTIVILYHPKLTL--MTFYL--YTIMTSTVFLTFNT- 221
Cdd:COG1007  269 ----QLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLl 344

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 156523733 222 TKSLKLSTTMTSW----TKTPMLNATLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:COG1007  345 SRKGGEAEEIEDLaglaRRSPLLALAMTIFLLSLAGIPPTAGFFGKFYV 393
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-266 3.51e-27

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 108.17  E-value: 3.51e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733   23 SNHWMMAWTGLEINTLAIIPFI-SKTHHPRAIEATIKYFLVQATASALILFSSTINAWQTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733   91 HPTSSALLTAAVAMKLGLVPFHFWFPEVLQGSPMT-TALLLSTMMKFPPITLLLLTSHSLN-----HTLLTLMAVASAAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLIRRSLLYLPsspfiQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  165 GGWMGLNQTQLRKIMAFSSISHLGWMTIVIL----YHPKLTLMTFYLYTIMTSTVFLTFN-----TTKSLKLSTTMTSWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLCAGsviyrRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|.
gi 156523733  236 KTPMLNATLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLI 271
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-275 4.07e-25

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 105.42  E-value: 4.07e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733   14 LLGTTITISSNHWMMAWTGLEINTLAIIPFIS-KTHHPRAIEATIKYFLVQATASALILFSSTINAWQTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733   93 TSS------------ALLTAAVAMKLGLVPFHFWFPEVLQGSPMTTALLLSTMMK---FPPIT----LLLLTSHSLNHTL 153
Cdd:TIGR01770 192 LSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLrlflYILFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  154 LTLMAVASAALGGWMGLNQTQLRKIMAFSSISHLGWMTIVILYHPKLTL--MTFYL--YTIMTSTVFLTFNTTKSLKLS- 228
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYIfiYALMSLGAFGVLSLLRSYKDEw 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 156523733  229 ----TTMTSWTKT-PMLNATLMLTLLSLAGLPPLTGFLPKWLITQELTKQEM 275
Cdd:TIGR01770 352 ieyiSDFAGLFKTnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 6.05e-157

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 443.49  E-value: 6.05e-157
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733   1 MNPHAKLISTLSLLLGTTITISSNHWMMAWTGLEINTLAIIPFISKTHHPRAIEATIKYFLVQATASALILFSSTINAWQ 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  81 TGQWDITQLTHPTSSALLTAAVAMKLGLVPFHFWFPEVLQGSPMTTALLLSTMMKFPPITLLLLTSHSLNHTLLTLMAVA 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 161 SAALGGWMGLNQTQLRKIMAFSSISHLGWMTIVILYHPKLTLMTFYLYTIMTSTVFLTFNTTKSLKLSTTMTSWTKTPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 241 NATLMLTLLSLAGLPPLTGFLPKWLITQELTKQEMTPTAMTIAMLSLLSLFFYLRLAYYSTITLPPNSTNHMKQWRTNKA 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 156523733 321 TNPSIALLATLSILLLPMSPMILTSI 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-344 1.27e-127

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 369.13  E-value: 1.27e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733   1 MNPHAKLISTLSLLLGTTITISSNHWMMAWTGLEINTLAIIPFISKTHHPRAIEATIKYFLVQATASALILFSSTINAWQ 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  81 TGQWDITQLTHPTSSALLTAAVAMKLGLVPFHFWFPEVLQGSPMTTALLLSTMMKFPPITLLLLTSHSlNHTLLTLMAVA 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 161 SAALGGWMGLNQTQLRKIMAFSSISHLGWMTIVILYHPKLTLMTFYLYTIMTSTVFLTFNTTKSLKLSTTMTSWTKTPML 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 241 NATLMLTLLSLAGLPPLTGFLPKWLITQELTKQEMTPTAMTIAMLSLLSLFFYLRLAYYSTITLPPNSTNHMKQWRT-NK 319
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLpST 319

                        330       340
                 ....*....|....*....|....*
gi 156523733 320 ATNPSIALLATLSILLLPMSPMILT 344
Cdd:MTH00135 320 QLTLPLAISTTATLMLLPLTPAILA 344
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-344 5.86e-124

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 360.01  E-value: 5.86e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733   1 MNPHAKLISTLSLLLGTTITISSNHWMMAWTGLEINTLAIIPFISKTHHPRAIEATIKYFLVQATASALILFSSTINAWQ 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  81 TGQWDITQLTHPTSSALLTAAVAMKLGLVPFHFWFPEVLQGSPMTTALLLSTMMKFPPITLLLLTSHSLNHTLLTLMAVA 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 161 SAALGGWMGLNQTQLRKIMAFSSISHLGWMTIVILYHPKLTLMTFYLYTIMTSTVFLTFNTTKSLKLSTTMTSWTKTPML 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 241 NATLMLTLLSLAGLPPLTGFLPKWLITQELTKQEMTPTAMTIAMLSLLSLFFYLRLAYYSTITLPPNSTNHMKQWRTNKA 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                        330       340
                 ....*....|....*....|....
gi 156523733 321 TNPSIALLATLSILLLPMSPMILT 344
Cdd:MTH00070 321 TNNLLSLTIILSLMLLPITPTILN 344
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-344 3.23e-107

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 317.17  E-value: 3.23e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733   1 MNPHAKLISTLSLLLGTTITISSNHWMMAWTGLEINTLAIIPFISKTHHPRAIEATIKYFLVQATASALILFSSTINAWQ 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  81 TGQWDITQLTHPTSSALLTAAVAMKLGLVPFHFWFPEVLQGSPMTTALLLSTMMKFPPITLLLLTSHSLNHTLLTLMAVA 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 161 SAALGGWMGLNQTQLRKIMAFSSISHLGWMTIVILYHPKLTLMTFYLYTIMTSTVFLTFNTTKSLKLSTTMTSWTKTPML 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 241 NATLMLTLLSLAGLPPLTGFLPKWLITQELTKQEMTPTAMTIAMLSLLSLFFYLRLAYYSTITLPPnSTNHMK-QWR-TN 318
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQfEN 319

                        330       340
                 ....*....|....*....|....*.
gi 156523733 319 KATNPSIALLATLSILLLPMSPMILT 344
Cdd:MTH00105 320 TKPMTLLPTLIILSTMLLPLTPMLSI 345
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-344 1.85e-94

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 284.94  E-value: 1.85e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733   1 MNPHAKLISTLSLLLGTTITISSNHWMMAWTGLEINTLAIIPFISKTHHPRAIEATIKYFLVQATASALILFSSTINAWQ 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  81 TGQWDITQLTHPTSSALLTAAVAMKLGLVPFHFWFPEVLQGSPMTTALLLSTMMKFPPITLLLLTSHSLNHTLLTLMAVA 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 161 SAALGGWMGLNQTQLRKIMAFSSISHLGWMTIVILYHPKLTLMTFYLYTIMTSTVFLTFNTTKSLKLSTTMTSWTKTPML 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 241 NATLMLTLLSLAGLPPLTGFLPKWLITQELTKQEMTPTAMTIAMLSLLSLFFYLRLAYYSTITLPPNSTNHMKQWRTNKA 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                        330       340
                 ....*....|....*....|....
gi 156523733 321 TNPSIALLATLSILLLPMSPMILT 344
Cdd:MTH00200 321 SNLLVGLLLLLSILGLPLTPQLLF 344
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-266 3.27e-84

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 258.71  E-value: 3.27e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733   1 MNPHAKLISTLSLLLGTTITISSNHWMMAWTGLEINTLAIIPFISKTHHPRAIEATIKYFLVQATASALILFSSTINAWQ 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  81 TGQWDITQLTHPTSSALLTAAVAMKLGLVPFHFWFPEVLQGSPMTTALLLSTMMKFPPITLLLLTSHSLNHTLLTLMAVA 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 161 SAALGGWMGLNQTQLRKIMAFSSISHLGWMTIVILYHPKLTLMTFYLYTIMTSTVFLTFNTTKSLKLSTTMTSWTKTPML 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260
                 ....*....|....*....|....*.
gi 156523733 241 NATLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFIS 266
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-319 7.38e-56

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 185.03  E-value: 7.38e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733   1 MNPHAKLISTLSLLLGTTITISSNHWMMAWTGLEINTLAIIPFISKTHHPRAIEATIKYFLVQATASALILFSSTINAWq 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  81 tgqwdITQLTHPTSSALLTAAVAMKLGLVPFHFWFPEVLQGSPMTTALLLSTMMKFPPITLLLLTShslNHTLLTLMAVA 160
Cdd:MTH00160  81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLI---NNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 161 SAALGGWMGLNQTQLRKIMAFSSISHLGWMTIVILYHPKLTLMTFYLYTIMTSTVFLTFNTTKSLKLSTTMTSWTKTPML 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 156523733 241 NATLMLTLLSLAGLPPLTGFLPKWLITQELTKQEMTPTAMTIAMLSLLSLFFYLRLAyYSTITLPPNSTNHMKQWRTNK 319
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRIS-YSSLMLNYNKNKWNLKKKKNK 310
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 13-275 2.73e-49

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 167.76  E-value: 2.73e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  13 LLLGTTITISSNHWMMAWTGLEINTLAIIPFISKTHHPRAIEATIKYFLVQATASALILFSSTINAWQTGQWDitqlthp 92
Cdd:MTH00144  13 MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWF------- 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  93 tSSALLTAAVAMKLGLVPFHFWFPEVLQGSPMTTALLLSTMMKFPPITLLLLTSHSLNH-TLLTLMAVASAALGGWMGLN 171
Cdd:MTH00144  86 -SMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSALVGSIGGLN 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 172 QTQLRKIMAFSSISHLGWMTIVILYHPKLTLMTFYLYtIMTSTVFLTFNTTKSLKLSTTMTSWTKTPMLNATLMLTLLSL 251
Cdd:MTH00144 165 QTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIY-IVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLSIISLLLSL 243

                        250       260
                 ....*....|....*....|....
gi 156523733 252 AGLPPLTGFLPKWLITQELTKQEM 275
Cdd:MTH00144 244 GGLPPFLGFCSKLLVLISSMESSP 267
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-275 4.18e-45

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 156.86  E-value: 4.18e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733   1 MNPHAKLISTlSLLLGTTITISSNHWMMAWTGLEINTLAIIPFISKTHHPRAIEATIKYFLVQATASALILFSSTInawq 80
Cdd:MTH00011   4 TFPTMFLFSS-TMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM---- 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  81 tgQWDITQLTHPTSSALLTAAVAMKLGLVPFHFWFPEVLQGSPMTTALLLSTMMKFPPITLLLLTSHSLNHTLLTLMAVA 160
Cdd:MTH00011  79 --MWSFPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAM 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 161 SAALGGWMGLNQTQLRKIMAFSSISHLGWMTIVILYHPKLTLMTFYLYTIMTSTVFLTFNTTKSLKLSTTMTSWTKTPML 240
Cdd:MTH00011 157 SALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTT 236

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 156523733 241 NATLMLTLLSLAGLPPLTGFLPKWLITQELTKQEM 275
Cdd:MTH00011 237 SMSLFIMLLSLGGLPPFTGFMPKLMAIETLTSNSM 271
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 11-270 3.05e-34

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 128.25  E-value: 3.05e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  11 LSLLLGTTITISSNHWMMAWTGLEINTLAIIPFISKTHHPRAIEATIKYFLVQATASALILFSSTINAWQTgqwditqLT 90
Cdd:MTH00197   5 FIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL-------YL 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  91 HPTSSALLTAAVAMKLGLVPFHFWFPEVLQGSPMTTALLLSTMMKFPPITLLLLTSHslNHTLLTLMAVASAALGGWMGL 170
Cdd:MTH00197  78 SLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGIGGM 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 171 NQTQLRKIMAFSSISHLGWMTIVILYHPKLTLMTFYLYTIMTSTVFLTFNTTKSLKLSTTMTSWTKTPMLNATLMLTLLS 250
Cdd:MTH00197 156 NQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLS 235

                        250       260
                 ....*....|....*....|
gi 156523733 251 LAGLPPLTGFLPKWLITQEL 270
Cdd:MTH00197 236 LGGLPPLSGFFLKWLILTSL 255
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-266 7.34e-33

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 127.15  E-value: 7.34e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  14 LLGTTITISSNHWMMAWTGLEINTLAIIPFIS-KTHHPRAIEATIKYFLVQATASALILFSSTINAWQTGQWDITQL--- 89
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLNLAGIaaa 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  90 --THPTSSALLTAAVAM-------KLGLVPFHFWFPEVLQGSPMTTALLLSTMMK--------------FPPITLLLlts 146
Cdd:COG1007  192 laAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafaallrllveaFPGLAADW--- 268

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 147 hslnHTLLTLMAVASAALGGWMGLNQTQLRKIMAFSSISHLGWMTIVILYHPKLTL--MTFYL--YTIMTSTVFLTFNT- 221
Cdd:COG1007  269 ----QLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLl 344

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 156523733 222 TKSLKLSTTMTSW----TKTPMLNATLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:COG1007  345 SRKGGEAEEIEDLaglaRRSPLLALAMTIFLLSLAGIPPTAGFFGKFYV 393
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-266 3.08e-30

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 118.21  E-value: 3.08e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  13 LLLGTTITISSNHWMMAWTGLEINTLAIIPFI-SKTHHPRAIEATIKYFLVQATASALILFS-------------STINA 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  79 WQTGQWDITQLTHPTSSALLTAAVAMKLGLVPFHFWFPEVLQGSPMTTALLLSTMMKFPPITLLLLTSHSLNhtLLTLMA 158
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 159 VASAALGGWMGLNQTQLRKIMAFSSISHLGWMTIVI----LYHPKLTLMTFYLYTIMTSTVF---LTFNTTKSLKLSTTM 231
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFsiiLALNVYKNLIIEFSG 239

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 156523733 232 TSwTKTPMLNATLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:MTH00196 240 LS-RRLPILAITLALTFLSIAGIPPLVGFLGKWLI 273
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 11-266 1.32e-28

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 115.11  E-value: 1.32e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  11 LSLLLGTTITISSNHWMMAWTGLEINTLAIIPFIS-KTHHPRAIEATIKYFLVQATASALILFSSTINAWQTGQWDI--- 86
Cdd:MTH00199 104 LIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqgi 183

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  87 -TQLTHPTSSALLTAAVAMKLGLVPFHFWFPEVLQGSPMTTALLLSTMMKFPPITLLLLTSHSLNHTLLTlmAVASAALG 165
Cdd:MTH00199 184 nSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYG 261

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 166 GWMGLNQTQLRKIMAFSSISHLGW----MTIVILYHPKLTLMTFYLYTIMTSTVF---LTFNTTKSLKLSTTMTSwTKTP 238
Cdd:MTH00199 262 AIGALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFsiiLSLKLTKGLIVEVSGLS-RKNP 340

                        250       260
                 ....*....|....*....|....*...
gi 156523733 239 MLNATLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:MTH00199 341 VIALTLALTFLSIAGIPPLAGFLSKWLI 368
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-266 3.51e-27

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 108.17  E-value: 3.51e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733   23 SNHWMMAWTGLEINTLAIIPFI-SKTHHPRAIEATIKYFLVQATASALILFSSTINAWQTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733   91 HPTSSALLTAAVAMKLGLVPFHFWFPEVLQGSPMT-TALLLSTMMKFPPITLLLLTSHSLN-----HTLLTLMAVASAAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLIRRSLLYLPsspfiQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  165 GGWMGLNQTQLRKIMAFSSISHLGWMTIVIL----YHPKLTLMTFYLYTIMTSTVFLTFN-----TTKSLKLSTTMTSWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLCAGsviyrRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|.
gi 156523733  236 KTPMLNATLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLI 271
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-279 4.87e-27

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 111.07  E-value: 4.87e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  14 LLGTTITISSNHWMMAWTGLEINTLA--IIPFISKtHHPRAIEATIKYFLVQATASALILFSSTINAWQTGQWDITQLTH 91
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPlyALAALRR-DRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAK 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  92 PTSS------------ALLTAAVAMKLGLVPFHFWFPEVLQGSPMTTALLLST--------------MMKFPPITLLllt 145
Cdd:PRK05777 192 ALADgsgnsllllfglVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATapkiaafavllrllVVAFGGLSED--- 268

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 146 shslNHTLLTLMAVASAALGGWMGLNQTQLRKIMAFSSISHLGWMTIVILYHPKLTL--MTFYL--YTIMTSTVFLTFNT 221
Cdd:PRK05777 269 ----WQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFGVISL 344

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 156523733 222 TKS-LKLSTTMTSWT----KTPMLNATLMLTLLSLAGLPPLTGFLPKWLITQELTKQEMTPTA 279
Cdd:PRK05777 345 LRRkGGEAESISDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLA 407
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-275 4.07e-25

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 105.42  E-value: 4.07e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733   14 LLGTTITISSNHWMMAWTGLEINTLAIIPFIS-KTHHPRAIEATIKYFLVQATASALILFSSTINAWQTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733   93 TSS------------ALLTAAVAMKLGLVPFHFWFPEVLQGSPMTTALLLSTMMK---FPPIT----LLLLTSHSLNHTL 153
Cdd:TIGR01770 192 LSNgmlnisllllgiVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLrlflYILFGFSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  154 LTLMAVASAALGGWMGLNQTQLRKIMAFSSISHLGWMTIVILYHPKLTL--MTFYL--YTIMTSTVFLTFNTTKSLKLS- 228
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYIfiYALMSLGAFGVLSLLRSYKDEw 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 156523733  229 ----TTMTSWTKT-PMLNATLMLTLLSLAGLPPLTGFLPKWLITQELTKQEM 275
Cdd:TIGR01770 352 ieyiSDFAGLFKTnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-284 3.36e-21

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 93.67  E-value: 3.36e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  13 LLLGTTITISSNHWMMAWTGLEINTLAIIPFISKTHHPRAIEATIKYFLVQATASALILFSSTINAWQTGQWDITQLTH- 91
Cdd:COG0651  116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAr 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  92 ---------PTSSALLTAAVAMKLGLVPFHFWFPEVLQGSPM-TTALLLSTMMK-------------FPPITLLLLtshs 148
Cdd:COG0651  196 laeldpgllLAAFALLLVGFGIKAALFPLHFWLPDAYPAAPSpVSALLSGLLTKvgvyailrvltllFGADPALFL---- 271

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 149 lnHTLLTLMAVASAALGGWMGLNQTQLRKIMAFSSISHLGWMTIVI-LYHPKLTLMTFYLY---TIMTSTVFLT----FN 220
Cdd:COG0651  272 --GTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLgLGTPLGLAGALFHLlnhALAKALLFLAagaiER 349

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 156523733 221 TTKSLKLSTTMTSWTKTPMLNATLMLTLLSLAGLPPLTGFLPKWLITQELTKQEMTPTAMTIAM 284
Cdd:COG0651  350 ATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLL 413
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-263 5.38e-18

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 84.67  E-value: 5.38e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  51 RAIEATIKYFLVQATASALIL--FSST--INAWQTGQWDI------TQLTHPTSS----ALLTAAVAMKLGLVPFHFWFP 116
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVygFSWLygLSGGEIELQEIvnglinTQMYNSPGIsialIFITVGIGFKLSLAPFHQWTP 238

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 117 EVLQGSPMTTALLLSTMMK--------------FPPITLLLltshslnHTLLTLMAVASAALGGWMGLNQTQLRKIMAFS 182
Cdd:CHL00049 239 DVYEGSPTPVVAFLSVTSKvaasalatrifdipFYFSSNEW-------HLLLEILAILSMILGNLIAITQTSMKRMLAYS 311

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 183 SISHLGWMTIVIL-------YHPKLTLMTFYLY----TIMTSTVFLTFNTTKSLKLSTTMtsWTKTPMLNATLMLTLLSL 251
Cdd:CHL00049 312 SIGQIGYVIIGIIvgdsndgYASMITYMLFYIFmnlgTFACIVLFGLRTGTDNIRDYAGL--YTKDPFLALSLALCLLSL 389

                        250
                 ....*....|..
gi 156523733 252 AGLPPLTGFLPK 263
Cdd:CHL00049 390 GGIPPLAGFFGK 401
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 8.04e-18

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 84.33  E-value: 8.04e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  50 PRAIEATIKYFLVQATASALILFSST----INAWQTGQWDITQ--LTHPTSSALLT-----AAVAMKLGLVPFHFWFPEV 118
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYGSSllygLSGGSTQLSAIALalITSPSLGLALAlvfviAGIAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 119 LQGSPMTTALLLSTMMK--------------FPPITLLLltshslnHTLLTLMAVASAALGGWMGLNQTQLRKIMAFSSI 184
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKaagfalairllvtaFPSFDEQW-------KLLFTALAILSMVLGNVVALAQTSMKRMLAYSSI 309

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 185 SHLGWMTI--VILYHPKLTLMTFYL--YTIMT----STVFLTFNTTKSLKLSTTMTSWTKTPMLNATLMLTLLSLAGLPP 256
Cdd:PRK02504 310 GQAGFVMIglVAGTEAGYASMVFYLlaYLFMNlgafACVILFSLRTGTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPP 389


                 ....*..
gi 156523733 257 LTGFLPK 263
Cdd:PRK02504 390 LAGFFGK 396
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 15-266 1.87e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 80.29  E-value: 1.87e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  15 LGTTITISSNHWMMAWTGLEINTLAIIPFISKTHHPRAI---------EATIKYFLVQATASALILFSSTINAWQTGQ-- 83
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  84 --WDITQLTHPTSSALL----------TAAVAMKLGLVPFHFWFPEVLQGSPMTTALLLSTMMKFppITLLLLTSHSLNH 151
Cdd:MTH00198 279 mlGTILSATLETTNIELrqgslgylfiTVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 152 TLLTLMAVASAALGGWMGLNQTQLRKIMAFSSISHLGWMTIVIL------YHPKLTLMTFYLYTIMTS-TVFLTF----- 219
Cdd:MTH00198 357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSagtyesLQASWTYAVTYLVSALASfTVICTLeefgt 436

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 220 -------------NTTKSLKLSTTMTSWTKTPMLNATLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:MTH00198 437 rtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFI 496
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 1.91e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 70.90  E-value: 1.91e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  33 LEINTLAIIPFIS-KTHHPRAIEATIKYFLVQATASALILFSSTINAWQTGQWDITQLTHPTSS----------ALLTAA 101
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGIALLYGQYGTLNMAYLAVKMSEnptvvakialALFIAG 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 102 VAMKLGLVPFHFWFPEVLQGSP--MTTALLLSTMMKFPPITLLLLTSHSLNHTLLTL------MAVASAALGGWMGLNQT 173
Cdd:PRK08376 230 LAMKSGAVPVHMWLPDAYPAAPssISAMLLVIKQAGLYALARVLFSIYGPAINLATVgwviiiLGCLTMFVGVAMAVVQK 309

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 174 QLRKIMAFSSISHLGWMTI---VILYHPKLTLMTFYLYTIMTSTVFLTFNTT--KSLKLSTT--------------MTSW 234
Cdd:PRK08376 310 DVKRLLAYHSVSQIGYMLLglgVGLAALGDPAMASYGEIALAGGIYHIVNHAlyKALLFLTAgaviyetgtrnlneLGGL 389

                        250       260       270
                 ....*....|....*....|....*....|...
gi 156523733 235 TKT-PMLNATLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376 390 ARTmPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-266 3.27e-11

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 63.95  E-value: 3.27e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  49 HPRAIEATIKYFLVQATASALILFSSTINAWQTGQW--DITQLTHPTSS--------ALLTAAVAMKLGLVPFHFWFPEV 118
Cdd:COG1008  156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAAPLPltaqlllfLAFFIAFAVKVPMFPFHTWLPDA 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 119 LQGSPMTTALLLS-TMMK-------------FPPITLLLLtshslnhTLLTLMAVASAALGGWMGLNQTQLRKIMAFSSI 184
Cdd:COG1008  236 HVEAPTAGSVLLAgVLLKmggygllrfalplFPEASAYFA-------PLLAALGVIGIIYGALVALAQTDLKRLIAYSSV 308

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 185 SHLGWMTIVI--LYHPKLTLMTFYL--YTIMTSTVFL----TFNTTKSLKLSTTMTSWTKTPMLNATLMLTLLSLAGLPP 256
Cdd:COG1008  309 SHMGFVLLGIfaLNPLGLQGAVLQMvsHGLITAALFLlvgvLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPG 388

                        250
                 ....*....|
gi 156523733 257 LTGFLPKWLI 266
Cdd:COG1008  389 TSGFVGEFLV 398
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-280 1.28e-10

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 62.32  E-value: 1.28e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733   2 NPHAKLISTLSLLLGTTITISSNHWMMAWTGLEINTLA---IIPFISKThhprAIEATIKYFLVQATASALILFSSTINA 78
Cdd:PRK08668  96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSsfmMVPMGKKE----SRKASLKYFVLSAIGAYAMLYAIFLIY 171

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  79 WQTGQWDITQ----LTHPTSSA-------LLTAAVAMKLGLVPFHFWFPEVLQGSPMT-TALL---LSTM---------- 133
Cdd:PRK08668 172 AKTGTFDFADisqgLINDTSTGfalivflFLLAFGVAKAGIFPLHVWAPDAYSEAPQSfSAVLsgqLSKLgaygfllvly 251

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 134 ----MKFPPITLLLLTSHSLNHTLLTLMAVaSAALGGWMGLNQTQLRKIMAFSSISHLGWMTIVILYHPKLT----LMTF 205
Cdd:PRK08668 252 vlpgTKLFSEFGTYRGVPLFNYILAWLGNI-SIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGfaggLFHV 330

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 156523733 206 YLYTIMTSTVFLTFNT----TKSLKLSTTMTSWTKTPMLNATLMLTLLSLAGLPPLTGFLPKWLITQELTKQEMTPTAM 280
Cdd:PRK08668 331 FNHALFKGLFFLIFAAviyrTGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAF 409
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-266 4.94e-09

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 57.26  E-value: 4.94e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733   50 PRAIEATIKYFLVQATASALILFSSTINAWQTGQ-WDITQL-THPTSSALLT-------AAVAMKLGLVPFHFWFPEV-- 118
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGtFDLLELlNLPLPFGVQTwlflaffIAFAVKVPLFPLHTWLPDAhv 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  119 ---LQGSPMTTALLLST----MMKFP-PITLLLLTSHSlnhTLLTLMAVASAALGGWMGLNQTQLRKIMAFSSISHLGWM 190
Cdd:TIGR01972 232 eapTAGSVILAGVLLKMgtygFLRFNlPLFPDASLYFA---PVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFV 308

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  191 TIVILYHPKLTLM--TFYLYT--IMTSTVFL----TFNTTKSLKLSTTMTSWTKTPMLNATLMLTLLSLAGLPPLTGFLP 262
Cdd:TIGR01972 309 LLGIFSFNELGISgaVFQMIShgLITAALFLlvgvLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVG 388


                  ....
gi 156523733  263 KWLI 266
Cdd:TIGR01972 389 EFLI 392
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 8.26e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 56.81  E-value: 8.26e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  33 LEINTLAIIPFISKTHHPRAIEATIKYFLVQATASALILFSSTINAWQTGQWDITQLTH--PTSSALLTA------AVAM 104
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGalAENPTVVTAfgfvllALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 105 KLGLVPFHFWFPEVLQG-SPMTTALLLSTMMKFP---------PITLLLLTSHSLNHTLLTLMAVASAALGGWMGLNQTQ 174
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAvyaliriyfTVFGGDFRFALGLGWLLAVLALLSMLVGSLAALGQDD 294

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 175 LRKIMAFSSISHLGWMT--IVILYHPKLTLMTFYL--YTIMTSTVFLT----FNTTKSLKLSTTMTSWTKTPMLNATLML 246
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILlgLALLTPLALAAGLLHLlhHALMKGALFLAagaiEVTYGTRRLSELSGLGRRMPLTAAAFAV 374

                        250       260
                 ....*....|....*....|
gi 156523733 247 TLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08375 375 ASLSLIGVPPTSGFVSKWYL 394
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-271 1.94e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 55.34  E-value: 1.94e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  33 LEINTLAIIPFISKTHHPRAIEATIKYFLVQATASALILFSSTINAWQTGQWDITQLTH--PTSSALLTAAVAMKLGLVP 110
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 111 FHFWFPEVLQGSPMTTALLLSTMMKFPPITLLLLTSHSLNHT--LLTLMAVASAALGGWMGLNQTQLRKIMAFSSISHLG 188
Cdd:PRK07234 203 SGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLdlIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLG 282

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 189 WMTIVILYHPKLTLMtfylYTIMTSTVFLTFNTTKSLklstTMTSWTKTPMLNAT-LMLTL--LSLAGLPPLTGFLPKWL 265
Cdd:PRK07234 283 FILAAPLVGGLYALA----HGLVKSTLFLCAGALPSR----NFTELISQMLGIGKwIPLTMasFSIAGFPLLAGFVSKVL 354


                 ....*.
gi 156523733 266 ITQELT 271
Cdd:PRK07234 355 TLKNLL 360
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-215 2.51e-08

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 55.15  E-value: 2.51e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  13 LLLGTTITISSNHWMMAWTGLEINTLAIIPFISKTHHPRAIEATIKYFLVQATA------SALILFSSTINAWQTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  87 TQLTHPT---SSALLTAA-------VAMKLGLVPFHFWFPEVLQGSPMTTALLLSTMMKFPPITLLLLTSHSLNHT---- 152
Cdd:PRK08676 191 TELAAHAsllSPSVLGASflfifigFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSgaae 270

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 156523733 153 ----LLTLMAVASAALGGWMGLNQTQLRKIMAFSSISHLGWMTIVILYHPKLTLMTFYLYTIMTSTV 215
Cdd:PRK08676 271 qfsnVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLV 337
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 93-284 4.07e-08

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 54.93  E-value: 4.07e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  93 TSSALLTAAVAMKLG-------LVPFHFWFPEVLQG-SPMTTALLLSTM--------MKFPPITLLLLTSHslnhTLLTL 156
Cdd:PRK12647 189 REHPLYLAILLLVLGgaftksaQFPFHFWLPNAMEApTPVSAYLHSATMvkagiyllARLNPVLGGTPLWQ----TILPL 264

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 157 MAVASAALGGWMGLNQTQLRKIMAFSSISHLGWMTIVILYHPKLTLMTFYLYTIMTS----TVFLTFNT----TKSLKLS 228
Cdd:PRK12647 265 FGGLTMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFLVAHSlykgALFMVAGIidheTGTRDIT 344

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 156523733 229 TTMTSWTKTPMLNATLMLTLLSLAGLPPLTGFLPKWLITQELTKQEMTPTAMTIAM 284
Cdd:PRK12647 345 KLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEALLEAPLWSLILTVAA 400
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 78-266 5.23e-08

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 54.39  E-value: 5.23e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  78 AWQTGQWDITQL----THPTSSALLTAAVAM-------KLGLVPFHFWFPEVLQGsPMTTALLL--STM--------MKF 136
Cdd:COG1009  186 GAIAGTLNFSELlaaaPTILSSPLLTLILLLlllgafgKSAQFPLHFWLPDAMEG-PTPVSALLhaATMvkagvyllARL 264

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 137 PPITLLLLTShslnHTLLTLMAVASAALGGWMGLNQTQLRKIMAFSSISHLGWMTIVI--------LYHpkltLMTFYLY 208
Cdd:COG1009  265 SPLFALSPVW----LTVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALgvgayvaaLFH----LLTHAFF 336

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 156523733 209 ---------TIM--TSTVFLTfnttkslKLSttmTSWTKTPMLNATLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:COG1009  337 kallflgagSVIhaTGTRDIR-------KMG---GLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAI 395
PRK12650 PRK12650
DUF4040 family protein;
29-263 3.05e-07

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 52.35  E-value: 3.05e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  29 AWtglEINTLAIIPFISKTHhPRAIEATIKYFLVQATASALILFSSTINAWQTGQWDITQLTHPTSSA---LLTAAVAM- 104
Cdd:PRK12650 138 AW---ELVSLASFFLIARSG-SGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGILHSDVWAekpGLTTVVAVl 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 105 -------KLGLVPFHFWFPEVLQG-SPMTTALLLSTMMK--------FPPITLLLLTShslnHTLLTLMAVASAALGGWM 168
Cdd:PRK12650 214 iavaaftKSAQFPFHFWLPEAMAAiTPVSAFLHAAAVVKagiylllrFSPVFHDVAVW----NWLLIIVGMITALMGAVF 289

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 169 GLNQTQLRKIMAFSSISHLGWMTIVILYHPKLTLMTFYLYTI----MTSTVFLTF----NTTKSLKLSTTMTSWTKTPML 240
Cdd:PRK12650 290 AVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLahalFKSSLFMLIgvvdHQAGTRDIRRLGSLWRRMPFT 369

                        250       260
                 ....*....|....*....|...
gi 156523733 241 NATLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12650 370 FVSVTIAALSMAAVPPLFGFVSK 392
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
53-268 8.47e-07

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 50.33  E-value: 8.47e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  53 IEATIKYFLVQATASALILFSSTINAWQTGQWDITQL-----------THPTSSALLTAAVAMKLGLVPFhFWFPEVLQG 121
Cdd:PRK12663 157 LRGAIKYVVLNLIGSWLFLLGIGLLYGTFGTLNMAHIamrlndmgdtaTLTTIALLFLLAFGMKAALFPF-MWLPAAYHT 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 122 SPMTTALLLSTMMK--------------FPPITLLLltshslnHTLLTLMAVASAALGGWMGLNQTQLRKIMAFSSISHL 187
Cdd:PRK12663 236 PNTEVAALFAALLTkvgiyalirvftllFPQERELL-------HPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSI 308

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 188 GWM--------------TIVILYHpKLTLMTFyLYTIMTSTVFLTfnttKSLKLSTTMTSWTKTPMLNATLMLTLLSLAG 253
Cdd:PRK12663 309 GFIllglalgtpagingAIFYLVH-DMVVKTA-LFLIAGSLVRLT----GYRSLQYLGGLYRKEPLFGALFLILIFAIGG 382

                        250
                 ....*....|....*
gi 156523733 254 LPPLTGFLPKWLITQ 268
Cdd:PRK12663 383 LPPFSGFWGKVLLVQ 397
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-268 1.19e-05

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 46.95  E-value: 1.19e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  34 EINTLAIIPFISKTHHPRAIEATIKYFLVQATASALILFSSTINAWQTGQWDITQ-----LTHPTSSALLTAAVAMKLGL 108
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGL 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 109 V------PFHFWFPEVLQGSPMTTALLLSTMMKFPPITLLLLTSHSLN--------HTLLTLMAVASAALGGWMGLNQTQ 174
Cdd:PRK06277 210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLVIFKLFGglsyfpsaQGVLIALSVLAMVFGVVMALLQTD 289

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 175 LRKIMAFSSISHLGWMTIVILYHPKLTLMTFYLYT----IMTSTVFLTFNT----TKSLKLSTTMTSWTKTPMLNATLML 246
Cdd:PRK06277 290 YKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAinhvIYKSALFLGAGIvsyrTKTSNLRKLGGLLPVMPVVAFMVLC 369

                        250       260
                 ....*....|....*....|..
gi 156523733 247 TLLSLAGLPPLTGFLPKWLITQ 268
Cdd:PRK06277 370 AKLAISGVPPFNGFQSKLMLAQ 391
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 20-266 5.85e-05

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 44.54  E-value: 5.85e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  20 TISSNHWMMAWTGLEINTLAIIPFISKTHHPRAIEATIKYFLVQATASALILFSS----------TINAWQTGQW-DITQ 88
Cdd:PRK06458 124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyanaatvMGDGEMAILWtELLK 203

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  89 LTHPTSSALLTAAVAM-------KLGLVPFHFWFPE-----------VLQGSPMTTALLLSTMMKfppITLLLLTSHSLN 150
Cdd:PRK06458 204 HASLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALYAVLRYY---ILIDAAIGSDFP 280

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 151 HTLLTLMAVASAALGGWMGLNQTQLRKIMAFSSISHLGWMTIVILYHPKLTLMTFYLYTIMTSTV----------FLTFN 220
Cdd:PRK06458 281 GRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTksaiffasgnVLQKY 360

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 156523733 221 TTKSLKLSTTMTswTKTPMLNATLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK06458 361 GTRDINVIRGLL--KVSPLTGWGLMLGALAIAGMPPFGVFISEFLI 404
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-194 1.18e-04

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 43.65  E-value: 1.18e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  50 PRAIEATIKYFLVQATASALILFS----STINAWQTGQWDITQL-THPTSSALLT-------AAVAMKLGLVPFHFWFPE 117
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAiiylVVVYYNATGTFDIADLlNLPLPPGVQYwlflaffIAFAVKMPMFPLHTWLPD 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 118 VLQ-----GSPMTTALLLST----MMKFP-PITLLLLTSHSlnhTLLTLMAVASAALGGWMGLNQTQLRKIMAFSSISHL 187
Cdd:PRK05846 237 AHVqaptaGSVLLAGILLKMgaygLLRFSlPLFPDASHEFA---PIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHM 313


                 ....*..
gi 156523733 188 GWMTIVI 194
Cdd:PRK05846 314 GFVTLGI 320
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 105-271 1.40e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 43.79  E-value: 1.40e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 105 KLGLvpfHFWFPEVLQGSPMTTALLLSTMMKFPPITLLLLTSHSLNHTLLTLMAVA-----SAALGGWMGLNQTQLRKIM 179
Cdd:MTH00032 241 QLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIITifgalTAFFAATVGLVQNDLKKVI 317

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 180 AFSSISHLGWMTIVI---------LYHpkLTLMTFYLYTIMTSTVFLTFNTTKSLKLSTTMTSWTKTPMLNATLMLT-LL 249
Cdd:MTH00032 318 AYSTCSQLGYMVLIIgiegshnvgLFH--LVNHAFFKALLFLSAGSVIHSTTVDEQDMRKMGGLIHSIPFTYTMMLIgSF 395

                        170       180
                 ....*....|....*....|..
gi 156523733 250 SLAGLPPLTGFLPKWLITqELT 271
Cdd:MTH00032 396 SIMGLPYLTGFYSKDLIL-ELT 416
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 59-270 2.87e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 42.80  E-value: 2.87e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  59 YFLVQATASALILFSSTINAW-QTGQWDITQLTHPTSS-----ALLTAAVAMKLGLVPFHFWFPEVLQGSPMTTALLLST 132
Cdd:PRK08667 166 FYFVMTQLSTVFLMLGIIVLFiQTGSFELSPLGASAGIlslvfLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSALMSG 245

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 133 MM------KFPPITLLLLTSHSLNHTLLTLMAVASAALGGWMGLNQTQLRKIMAFSSISHLGWMTIVI-LY-------HP 198
Cdd:PRK08667 246 VMlkvavyGLVRFLMDVLSPELWWGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGIgLYvifgvygLD 325

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 199 KLTLMTF--YLYTIMTSTVF--LTFNTTKSLKLST------TMTSWTKT-PMLNATLMLTLLSLAGLPPLTGFLPKWLIT 267
Cdd:PRK08667 326 TLALLALggALFHSLNHALFksLLFLTAGSVVHATgtrnieKMGGLVKLmPYTSALFLVGAVSIAALPPFNGFASELLLY 405


                 ...
gi 156523733 268 QEL 270
Cdd:PRK08667 406 ESF 408
PRK12646 PRK12646
DUF4040 family protein;
86-272 6.10e-04

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 41.66  E-value: 6.10e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  86 ITQLTHPTSSALLTAAVAM-------KLGLVPFHFWFPEVLQGSPMTTALLLSTMM---------KFPPITLLLLTSHSl 149
Cdd:PRK12646 197 LGQADHIKNHGLFIPMIFMfllgaftKSAQFPFHIWLPRAMAAPTPVSAYLHSATMvkagifllfRFTPLLGLSNMYIY- 275

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 150 nhtLLTLMAVASAALGGWMGLNQTQLRKIMAFSSISHLGW-MTIV-----ILYHPKLTLMTFY-------LYTIMTSTVF 216
Cdd:PRK12646 276 ---IVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMiMAMVgigggYAQHQQDAIASIYvfvlfaaLFHLMNHAIF 352

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 156523733 217 LTF-----------NTTKSLKLSTTMTSWtkTPMLNATLMLTLLSLAGLPPLTGFLPKWLITQELTK 272
Cdd:PRK12646 353 KCAlfmgvgiidheAGTRDIRILSGMRQL--FPKMNLVMTIAALSMAGVPFLNGFLSKEMFLDALTQ 417
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 104-266 6.50e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 41.26  E-value: 6.50e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 104 MKLGLVPFHFWFPEVLQGSPMTTALLLS---TMMKFPPITLLLLTSHSLNHTLLTL--------MAVASAALGGWMGLNQ 172
Cdd:PRK12662 221 IKAALFPFHKWLIQAYSEAPSFISVFFSgtsTKVMIYLIIRIVYDVFKANFVFTTLpfnnvfmiLAALAIVFGSVLAILS 300

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 173 TQLRKIMAFSSISHLGWMTIVILYHPKLTLMTFYLY----TIMTSTVFLT-------FNTTKSLKLSTTmtsWTKTPMLN 241
Cdd:PRK12662 301 KDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVsgsisyhFGTTKLEDCLNL---WKSMPKIT 377

                        170       180
                 ....*....|....*....|....*
gi 156523733 242 ATLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK12662 378 LAFVLLSLSLIGMPPTSGFVAKWYI 402
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-268 6.64e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 41.24  E-value: 6.64e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  55 ATIKYFLVQATASALILFSSTINAWQTGQWD------ITQ-LTHPTSSALLTAAV---AMKLGLVPFHFWFPEV-LQGSP 123
Cdd:PRK07363 158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQnLSLNTQLILLTGLLlgfGIKIPLVPLHTWLPDAyTEASP 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 124 MTTALLLSTMMKFPPITLLLLTSHSLNHTL------LTLMAVASAALGGWMGLNQTQLRKIMAFSSISHLGWMTIV---- 193
Cdd:PRK07363 238 AVAILLGGVLAKLGTYGLLRFGLQLFPQTWslvapgLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAaaag 317

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 194 -----------ILYHPKLTLMTFYLYTIMTSTVfltfnTTKSL-KLSTTMTSWTKTPMLNATLMLTLLSLAGLPPLTGFL 261
Cdd:PRK07363 318 tqlsllgavaqMISHGLILALLFHLVGIVERKV-----GTRDLdVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFV 392


                 ....*..
gi 156523733 262 PKWLITQ 268
Cdd:PRK07363 393 AEFIVFQ 399
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
10-190 8.38e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 41.22  E-value: 8.38e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  10 TLSLLLGTTITISSNHW---MMAWTGLEINTLAIIPFISKthHPRAIEATIKYFLVQATASALILFSSTINAWQTGQWDI 86
Cdd:PRK08168 106 LAGVLAAVHLLVLSDHLlvlIAAWAAISLALHRLLCFYPD--RPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSLSL 183

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  87 TQL-----THPTSSA------LLTAAVAMKLGLVPFHFWFPEVLQGSPMTTALLLS--------TMMKFPPITLLLLTSH 147
Cdd:PRK08168 184 SALwahlaAQGASPSlqaaalLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAgvvnlggfVLIRFAPLLEQAPPAR 263

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 156523733 148 slnhTLLTLMAVASAALGGWMGLNQTQLRKIMAFSSISHLGWM 190
Cdd:PRK08168 264 ----WLLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFM 302
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
 7-270 1.04e-03

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 40.93  E-value: 1.04e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733   7 LISTLSL-LLGTTITISSNHWMMAWTGLEINTLAiiPFISKTHHPRAIEATIKYFLVQATASALILFSSTINAWQTGQWD 85
Cdd:PRK06459  74 LSSLYILtILGMAIVLTSDNYLLFLAGWEIMTIP--SYVAIALTKKNKRPAFVFMAFGELSTVLILAGFAWAFIISGTTN 151

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  86 ITQLTHPTSSALLTAAVAMKLGLVPFHF--WFPEVLQGSPMTTALLLSTMMKFPPI-----TLLLLTSHSLNHTLLTLMA 158
Cdd:PRK06459 152 FSYLPSPVPLILASFGFIIKMGMMPFLVseWLPIAHGNAPSNFSAILSATMTLMGVygilkMTILTQTIPIGYFGLTILA 231

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 159 VA--SAALGGWMGLNQTQLRKIMAFSSISHLGWM-----TIVILYHPKLTLMTFYLYTIMT---------STVFLTFNTT 222
Cdd:PRK06459 232 IGafSILFGALYAYVSENVKGLLAFSTIENNGAIlvalgLYMVTKQLITSIEHFSLITVILysfahsvakTGLFLSSGLQ 311

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 156523733 223 KSLKLSTTMTSWTKTPMLNATLMLtlLSLAGLPPLTGFLPKWLITQEL 270
Cdd:PRK06459 312 EKQSITYSKKIRNRWIELGLTLLA--SSLSGLLPNIGGVASWLLLESL 357
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 3.01e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 39.43  E-value: 3.01e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  48 HHPRAIEATIKYFLVQATASALILFSSTINAWQTGQWDITQLTHptSSALLTAAVAMKLGLV----------------PF 111
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQ--DSELIENIKGHPLFLItlilifigaaaksaqgPF 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 112 HFWFPEVLQGSPMTTALLLSTMMKFPPITLLLLTSHSLNHT-----LLTLMAVASAALGGWMGLNQTQLRKIMAFSSISH 186
Cdd:PRK12649 234 YIWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQ 313

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 187 LGWMTIVILY----HPKLTLM--TFYL--YTIMTSTVFLTFN------TTKSLKLSTTMTSwtKTPMLNATLMLTLLSLA 252
Cdd:PRK12649 314 LAYLMTMYGYttyhEPGLGVAaaTFHLlnHATFKACLFLVAGivaheaATRDIRKLGGLRK--EMPITFIVASIAALAMA 391

                        250
                 ....*....|.
gi 156523733 253 GLPPLTGFLPK 263
Cdd:PRK12649 392 GIPPLNGFLSK 402
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 107-272 3.59e-03

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 39.04  E-value: 3.59e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 107 GLVPFHFWFPEVLQGSPMTTALLLSTM-MKFPPITLLLLTSHSLNHTL-----LTLMAVASAALGGWMGLNQTQLRKIMA 180
Cdd:PRK08042 195 GIIPLHGWVPQAHANASAPAAALFSTVvMKIGLLGILTLSLLGGNAPLwwgvaLLVLGMITAFVGGLYALMEHNIQRLLA 274

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 181 FSSISHLG--------WMTIVILYHPKLTLMTFY--LY-----TIMTSTVFL----TFNTTKSLKLSTTMTSWTKTPMLN 241
Cdd:PRK08042 275 YHTLENIGiillglgaGVTGIALEQPALIALGLVggLYhllnhSLFKSVLFLgagsVWFRTGHRDIEKLGGIGKKMPVIS 354

                        170       180       190
                 ....*....|....*....|....*....|.
gi 156523733 242 ATLMLTLLSLAGLPPLTGFLPKWLITQELTK 272
Cdd:PRK08042 355 IAMLVGLMAMAALPPLNGFAGEWVIYQSFFK 385
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 56-268 4.98e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 38.78  E-value: 4.98e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733  56 TIKYFLVQATASAL------ILFS--STINAWQTGQwDITQLTHPTSSALLTAAV------AMKLGLVPFHFWFPEVLQG 121
Cdd:PRK07691 160 SIKYVLINVVSSAFfvvavaILYSvvGTLNMADISV-KIAELSAGQTGLITVVAIlflfvfATKAGLFPLYFWLPGSYYA 238

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 122 SPMTTALL---LSTMMKFPPITLLLLTSHSLN----HTLLTLMAVASAALGGWMGLNQTQLRKIMAFSSISHLGWMTIVI 194
Cdd:PRK07691 239 PPIAIAALfgaLLTKVGVYAIARTFTLFFSHDtsftHYLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGV 318

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 195 LYHPKLTLMTFYLYT----IMTSTVFL----TFNTTKSLKLSTtMTSWTKT-PMLNATLMLTLLSLAGLPPLTGFLPKWL 265
Cdd:PRK07691 319 AMMTESGMIGAIYYLihdmIVKAALFLligiMIKITGTTDLKK-MGGLIKRyPVLGWMFFIAALSLAGIPPLSGFYGKFF 397


                 ...
gi 156523733 266 ITQ 268
Cdd:PRK07691 398 IVE 400
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-265 8.83e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 37.98  E-value: 8.83e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 101 AVAMKLGLVPFHFWFPEVLQGSPMTTALLLSTMM----KFPPITLLLLTSHSLNHTL---LTLMAVASAALGGWMGLNQT 173
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGILlklgGYGLVRLSWPILPLGAQNLapaVIAMGIVGIVYGSFATCRQI 318

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156523733 174 QLRKIMAFSSISHLGWMTIVILYHPKL----TLMTFYLYTIMTSTVFLTFNT------TKSLK----LSTTMTSWtktpm 239
Cdd:MTH00226 319 DVKRLVAYSSVAHMGLVSITLVTHDIIgltgSIFIMLAHGIVSSLLFILVTIlydrhhTRLIKyyrgLSITMPIW----- 393

                        170       180
                 ....*....|....*....|....*..
gi 156523733 240 lnATLML-TLLSLAGLPPLTGFLPKWL 265
Cdd:MTH00226 394 --GTIMIvTSLANVAVPPSGNFIGEYL 418
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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