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Conserved domains on  [gi|157275768|gb|ABV28486|]
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cytochrome b, partial (mitochondrion) [Crocidura suaveolens suaveolens]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-130 1.34e-100

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 292.31  E-value: 1.34e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157275768   1 RKTHPLMKIVNSSFIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHA 80
Cdd:MTH00100   5 RKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHA 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 157275768  81 NGASMFFICLFLHVGRGLYYGSYMYLETWNIGVLLLFAVMATAFMGYVLP 130
Cdd:MTH00100  85 NGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLP 134
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-130 1.34e-100

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 292.31  E-value: 1.34e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157275768   1 RKTHPLMKIVNSSFIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHA 80
Cdd:MTH00100   5 RKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHA 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 157275768  81 NGASMFFICLFLHVGRGLYYGSYMYLETWNIGVLLLFAVMATAFMGYVLP 130
Cdd:MTH00100  85 NGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLP 134
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 5-130 2.88e-54

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 168.70  E-value: 2.88e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157275768   5 PLMKIVNSSFIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGAS 84
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 157275768  85 MFFICLFLHVGRGLYYGSYM--YLETWNIGVLLLFAVMATAFMGYVLP 130
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLP 128
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
14-130 6.31e-48

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 152.15  E-value: 6.31e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157275768   14 FIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLH 93
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 157275768   94 VGRGLYYG--SYMYLETWNIGVLLLFAVMATAFMGYVLP 130
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLP 119
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
5-130 5.17e-45

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 150.33  E-value: 5.17e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157275768   5 PLMKIVNSsFIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGAS 84
Cdd:COG1290   19 PLASLVRE-HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 157275768  85 MFFICLFLHVGRGLYYGSYMY---LeTWNIGVLLLFAVMATAFMGYVLP 130
Cdd:COG1290   98 LFFAAVYLHMFRGFFYGAYKKpreL-NWIIGVLLLLLTMAEAFTGYSLP 145
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-130 1.34e-100

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 292.31  E-value: 1.34e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157275768   1 RKTHPLMKIVNSSFIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHA 80
Cdd:MTH00100   5 RKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHA 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 157275768  81 NGASMFFICLFLHVGRGLYYGSYMYLETWNIGVLLLFAVMATAFMGYVLP 130
Cdd:MTH00100  85 NGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLP 134
CYTB MTH00131
cytochrome b; Provisional
 1-130 1.71e-88

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 261.51  E-value: 1.71e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157275768   1 RKTHPLMKIVNSSFIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHA 80
Cdd:MTH00131   5 RKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHA 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 157275768  81 NGASMFFICLFLHVGRGLYYGSYMYLETWNIGVLLLFAVMATAFMGYVLP 130
Cdd:MTH00131  85 NGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLP 134
CYTB MTH00074
cytochrome b; Provisional
 1-130 2.13e-88

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 261.54  E-value: 2.13e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157275768   1 RKTHPLMKIVNSSFIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHA 80
Cdd:MTH00074   6 RKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHA 85

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 157275768  81 NGASMFFICLFLHVGRGLYYGSYMYLETWNIGVLLLFAVMATAFMGYVLP 130
Cdd:MTH00074  86 NGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLP 135
CYTB MTH00119
cytochrome b; Provisional
 1-130 2.48e-87

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 258.68  E-value: 2.48e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157275768   1 RKTHPLMKIVNSSFIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHA 80
Cdd:MTH00119   6 RKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHA 85

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 157275768  81 NGASMFFICLFLHVGRGLYYGSYMYLETWNIGVLLLFAVMATAFMGYVLP 130
Cdd:MTH00119  86 NGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLP 135
CYTB MTH00191
cytochrome b; Provisional
 1-130 1.33e-84

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 251.37  E-value: 1.33e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157275768   1 RKTHPLMKIVNSSFIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHA 80
Cdd:MTH00191   2 RKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHA 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 157275768  81 NGASMFFICLFLHVGRGLYYGSYMYLETWNIGVLLLFAVMATAFMGYVLP 130
Cdd:MTH00191  82 NGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLP 131
CYTB MTH00156
cytochrome b; Provisional
 7-130 2.21e-80

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 240.07  E-value: 2.21e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157275768   7 MKIVNSSFIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMF 86
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 157275768  87 FICLFLHVGRGLYYGSYMYLETWNIGVLLLFAVMATAFMGYVLP 130
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLP 124
CYTB MTH00034
cytochrome b; Validated
 1-130 4.20e-78

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 234.99  E-value: 4.20e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157275768   1 RKTHPLMKIVNSSFIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHA 80
Cdd:MTH00034   5 RKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHA 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 157275768  81 NGASMFFICLFLHVGRGLYYGSYMYLETWNIGVLLLFAVMATAFMGYVLP 130
Cdd:MTH00034  85 NGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLP 134
CYTB MTH00145
cytochrome b; Provisional
 1-130 3.26e-77

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 232.87  E-value: 3.26e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157275768   1 RKTHPLMKIVNSSFIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHA 80
Cdd:MTH00145   6 RKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHA 85

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 157275768  81 NGASMFFICLFLHVGRGLYYGSYMYLETWNIGVLLLFAVMATAFMGYVLP 130
Cdd:MTH00145  86 NGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLP 135
CYTB MTH00016
cytochrome b; Validated
 1-130 2.38e-74

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 225.71  E-value: 2.38e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157275768   1 RKTHPLMKIVNSSFIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHA 80
Cdd:MTH00016   6 RKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHA 85

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 157275768  81 NGASMFFICLFLHVGRGLYYGSYMYLETWNIGVLLLFAVMATAFMGYVLP 130
Cdd:MTH00016  86 NGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLP 135
CYTB MTH00224
cytochrome b; Provisional
 1-130 1.59e-65

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 203.23  E-value: 1.59e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157275768   1 RKTHPLMKIVNSSFIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHA 80
Cdd:MTH00224   6 RTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHA 85

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 157275768  81 NGASMFFICLFLHVGRGLYYGSYMYLETWNIGVLLLFAVMATAFMGYVLP 130
Cdd:MTH00224  86 NGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLP 135
CYTB MTH00022
cytochrome b; Validated
 1-130 2.07e-63

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 197.62  E-value: 2.07e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157275768   1 RKTHPLMKIVNSSFIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHA 80
Cdd:MTH00022   4 RKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHA 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 157275768  81 NGASMFFICLFLHVGRGLYYGSYMYLETWNIGVLLLFAVMATAFMGYVLP 130
Cdd:MTH00022  84 NGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLP 133
CYTB MTH00053
cytochrome b; Provisional
 1-130 1.93e-60

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 189.92  E-value: 1.93e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157275768   1 RKTHPLMKIVNSSFIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHA 80
Cdd:MTH00053   6 RKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHA 85

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 157275768  81 NGASMFFICLFLHVGRGLYYGSYMYLETWNIGVLLLFAVMATAFMGYVLP 130
Cdd:MTH00053  86 NGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLP 135
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 5-130 2.88e-54

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 168.70  E-value: 2.88e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157275768   5 PLMKIVNSSFIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGAS 84
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 157275768  85 MFFICLFLHVGRGLYYGSYM--YLETWNIGVLLLFAVMATAFMGYVLP 130
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLP 128
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
14-130 6.31e-48

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 152.15  E-value: 6.31e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157275768   14 FIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLH 93
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 157275768   94 VGRGLYYG--SYMYLETWNIGVLLLFAVMATAFMGYVLP 130
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLP 119
CYTB MTH00033
cytochrome b; Provisional
 12-130 1.40e-47

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 157.02  E-value: 1.40e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157275768  12 SSFIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLF 91
Cdd:MTH00033  13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 157275768  92 LHVGRGLYYGSYMYLETWNIGVLLLFAVMATAFMGYVLP 130
Cdd:MTH00033  93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLP 131
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
5-130 5.17e-45

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 150.33  E-value: 5.17e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157275768   5 PLMKIVNSsFIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGAS 84
Cdd:COG1290   19 PLASLVRE-HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 157275768  85 MFFICLFLHVGRGLYYGSYMY---LeTWNIGVLLLFAVMATAFMGYVLP 130
Cdd:COG1290   98 LFFAAVYLHMFRGFFYGAYKKpreL-NWIIGVLLLLLTMAEAFTGYSLP 145
CYTB MTH00086
cytochrome b; Provisional
 8-130 7.90e-39

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 133.53  E-value: 7.90e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157275768   8 KIVNSSFIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFF 87
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 157275768  88 ICLFLHVGRGLYYGSYMYLETWNIGVLLLFAVMATAFMGYVLP 130
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLV 123
CYTB MTH00046
cytochrome b; Validated
 6-130 7.20e-27

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 101.98  E-value: 7.20e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157275768   6 LMKIVNSSFIDLPAPSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASM 85
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 157275768  86 FFICLFLHVGRGLYYGSYMYLETWNIGVLLLFAVMATAFMGYVLP 130
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILP 125
PRK03735 PRK03735
cytochrome b6; Provisional
 29-130 6.22e-22

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 86.69  E-value: 6.22e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157275768  29 FGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGLYYGSYMYLE- 107
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100
                 ....*....|....*....|....
gi 157275768 108 -TWNIGVLLLFAVMATAFMGYVLP 130
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLP 147
petB CHL00070
cytochrome b6
 20-130 3.54e-14

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 65.90  E-value: 3.54e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 157275768  20 PSNISSWWNFGSLLGICLIMQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWLIRYLHANGASMFFICLFLHVGRGLY 99
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110
                 ....*....|....*....|....*....|...
gi 157275768 100 YGSYMYLE--TWNIGVLLLFAVMATAFMGYVLP 130
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLP 139
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
84-130 1.70e-08

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 49.93  E-value: 1.70e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 157275768   84 SMFFICLFLHVGRGLYYGSYMYLE--TWNIGVLLLFAVMATAFMGYVLP 130
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLP 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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