NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|158120313|gb|ABW16858|]
View 

marmophin precursor [Conus marmoreus]

Protein Classification

conotoxin( domain architecture ID 10502995)

conotoxin is a small cysteine rich peptide that functions as a high affinity ligand for various receptors and ion channels

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
Conotoxin pfam02950
Conotoxin; Conotoxins are small snail toxins that block ion channels.
3-33 2.41e-04

Conotoxin; Conotoxins are small snail toxins that block ion channels.


:

Pssm-ID: 367269  Cd Length: 74  Bit Score: 35.45  E-value: 2.41e-04
                         10        20        30
                 ....*....|....*....|....*....|..
gi 158120313   3 SKLGVLLCIFLVLFPM-ATLQLDGDQTADRHA 33
Cdd:pfam02950  1 MKLTCVLIVALLLLTTlATADLDGDQPADRDA 32
 
Name Accession Description Interval E-value
Conotoxin pfam02950
Conotoxin; Conotoxins are small snail toxins that block ion channels.
3-33 2.41e-04

Conotoxin; Conotoxins are small snail toxins that block ion channels.


Pssm-ID: 367269  Cd Length: 74  Bit Score: 35.45  E-value: 2.41e-04
                         10        20        30
                 ....*....|....*....|....*....|..
gi 158120313   3 SKLGVLLCIFLVLFPM-ATLQLDGDQTADRHA 33
Cdd:pfam02950  1 MKLTCVLIVALLLLTTlATADLDGDQPADRDA 32
 
Name Accession Description Interval E-value
Conotoxin pfam02950
Conotoxin; Conotoxins are small snail toxins that block ion channels.
3-33 2.41e-04

Conotoxin; Conotoxins are small snail toxins that block ion channels.


Pssm-ID: 367269  Cd Length: 74  Bit Score: 35.45  E-value: 2.41e-04
                         10        20        30
                 ....*....|....*....|....*....|..
gi 158120313   3 SKLGVLLCIFLVLFPM-ATLQLDGDQTADRHA 33
Cdd:pfam02950  1 MKLTCVLIVALLLLTTlATADLDGDQPADRDA 32
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH