|
Name |
Accession |
Description |
Interval |
E-value |
| rfc |
PRK00440 |
replication factor C small subunit; Reviewed |
1-317 |
0e+00 |
|
replication factor C small subunit; Reviewed
Pssm-ID: 234763 [Multi-domain] Cd Length: 319 Bit Score: 538.30 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 1 MEEIWVEKYRPATLAEVVGQSVVTTRLASYVREKSMPHLLFAGPPGTGKTTCSLALAREMFGEHWQHNLHELNASDERGI 80
Cdd:PRK00440 3 MEEIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 81 DVVRGKIKEFARTAPIGGGGFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNYSSKIIEPIQSRCAVFRFRPLQ 160
Cdd:PRK00440 83 DVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLK 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 161 GEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAINSLQMAAAADKDITSEVVYQAVSAARPGEVREVLELALQGN 240
Cdd:PRK00440 163 KEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAATGKEVTEEAVYKITGTARPEEIREMIELALNGD 242
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 167045379 241 FAGARERLDALIITYGLAGEDILRQMHRTVRELEIPDEAKVQLIEKLAEVDFRLSEGATARIQIEAAIAHFIVVGRH 317
Cdd:PRK00440 243 FTEAREKLRDLMIDYGLSGEDIIKQIHREVWSLDIPEELKVELIDAIGEADFRITEGANERIQLEALLAKLALLGKK 319
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
50-316 |
6.84e-122 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 369.55 E-value: 6.84e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 50 TTCSLALAREMFGEHWQHNLHELNASDERGIDVVRGKIKEFARTAPIGGGGFKIIFLDEADALTSAAQAALRRTMEKYSR 129
Cdd:PRK04132 580 TTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSS 659
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 130 TCRFVLSCNYSSKIIEPIQSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAINSLQMAAAAD 209
Cdd:PRK04132 660 NVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALD 739
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 210 KDITSEVVYQAVSAARPGEVREVLELALQGNFAGARERLDALIITYGLAGEDILRQMHRTVRELEIPDEAKVQLIEKLAE 289
Cdd:PRK04132 740 DKITDENVFLVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHREVFNLPIDEPKKVELADKIGE 819
|
250 260
....*....|....*....|....*..
gi 167045379 290 VDFRLSEGATARIQIEAAIAHFIVVGR 316
Cdd:PRK04132 820 YNFRLVEGANEMIQLEALLAQFTLMGK 846
|
|
| PRK12402 |
PRK12402 |
replication factor C small subunit 2; Reviewed |
1-309 |
1.49e-100 |
|
replication factor C small subunit 2; Reviewed
Pssm-ID: 237090 [Multi-domain] Cd Length: 337 Bit Score: 299.21 E-value: 1.49e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 1 MEEIWVEKYRPATLAEVVGQSVVTTRLASYVREKSMPHLLFAGPPGTGKTTCSLALAREMFGEHWQHNLHELNASD--ER 78
Cdd:PRK12402 1 DAPLWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADffDQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 79 G------------------------IDVVRGKIKEFARTAPIGGGgFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFV 134
Cdd:PRK12402 81 GkkylvedprfahflgtdkrirsskIDNFKHVLKEYASYRPLSAD-YKTILLDNAEALREDAQQALRRIMEQYSRTCRFI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 135 LSCNYSSKIIEPIQSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAINSLQMAAAADKDITS 214
Cdd:PRK12402 160 IATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAALAAGEITM 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 215 EVVYQAVSAARPGE-VREVLELALQGNFAGARERLDALIITYGLAGEDILRQMHRTVRELEIPDEAkVQLIEKLAEVDFR 293
Cdd:PRK12402 240 EAAYEALGDVGTDEvIESLLDAAEAGDFTDARKTLDDLLIDEGLSGGEVLEELLRVARSRYRGDNL-ARLHRLAADADAR 318
|
330
....*....|....*.
gi 167045379 294 LSEGATARIQIEAAIA 309
Cdd:PRK12402 319 LTDGANDRIQLEALLA 334
|
|
| PLN03025 |
PLN03025 |
replication factor C subunit; Provisional |
5-314 |
4.32e-96 |
|
replication factor C subunit; Provisional
Pssm-ID: 178596 [Multi-domain] Cd Length: 319 Bit Score: 287.01 E-value: 4.32e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 5 WVEKYRPATLAEVVGQSVVTTRLASYVREKSMPHLLFAGPPGTGKTTCSLALAREMFGEHWQHNLHELNASDERGIDVVR 84
Cdd:PLN03025 3 WVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 85 GKIKEFAR---TAPIGGggFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNYSSKIIEPIQSRCAVFRFRPLQG 161
Cdd:PLN03025 83 NKIKMFAQkkvTLPPGR--HKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 162 EDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAINSLQMAAAADKDITSEVVYQAVSAARPGEVREVLELALQGNF 241
Cdd:PLN03025 161 QEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNCLKGKF 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 167045379 242 AGARERLDALIITyGLAGEDILRQMHRTVRELEIPDEAKVQLIEKLAEVDFRLSEGATARIQIEAAIAHFIVV 314
Cdd:PLN03025 241 DDACDGLKQLYDL-GYSPTDIITTLFRVVKNYDMPEFLKLEYLREIGFAHMRICDGVGSLLQLSGLLAKLCLV 312
|
|
| HolB |
COG0470 |
DNA polymerase III, delta prime subunit [Replication, recombination and repair]; |
20-311 |
8.40e-69 |
|
DNA polymerase III, delta prime subunit [Replication, recombination and repair];
Pssm-ID: 440238 [Multi-domain] Cd Length: 289 Bit Score: 216.38 E-value: 8.40e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 20 QSVVTTRLASYVREKSMPH-LLFAGPPGTGKTTCSLALAREMFGEHWQH------------------NLHELNA---SDE 77
Cdd:COG0470 1 QEEAWEQLLAAAESGRLPHaLLLHGPPGIGKTTLALALARDLLCENPEGgkacgqchsrlmaagnhpDLLELNPeekSDQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 78 RGIDVVRgKIKEFARTAPIGGGgFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNYSSKIIEPIQSRCAVFRFR 157
Cdd:COG0470 81 IGIDQIR-ELGEFLSLTPLEGG-RKVVIIDEADAMNEAAANALLKTLEEPPKNTPFILIANDPSRLLPTIRSRCQVIRFR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 158 PLQGEDVQRYLKfiagreKLKVNDDAYEALAYLAQGDLRRAINSLQMAAAADKDItsEVVYQAVSAARPgevrevLELAL 237
Cdd:COG0470 159 PPSEEEALAWLR------EEGVDEDALEAILRLAGGDPRAAINLLQALAGRKELL--EDLAALLSRDRA------LELLD 224
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 167045379 238 QGNFAGARERLDALiityglagediLRQMHRTVReLEIPDEAKVQLIEKLAEVDFRLSEGATARIQIEAAIAHF 311
Cdd:COG0470 225 ALLKAEALELLDWL-----------LKWLLDNLP-LEYAGEDLARAYEALSEADRRLGRYANDRLLLEALLAKL 286
|
|
| 44 |
PHA02544 |
clamp loader, small subunit; Provisional |
2-289 |
1.11e-47 |
|
clamp loader, small subunit; Provisional
Pssm-ID: 222866 [Multi-domain] Cd Length: 316 Bit Score: 162.47 E-value: 1.11e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 2 EEIWVEKYRPATLAEVVGQSVVTTRLASYVREKSMPH-LLFAGPPGTGKTTCSLALARE-----MFgehwqhnlheLNAS 75
Cdd:PHA02544 8 EFMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNmLLHSPSPGTGKTTVAKALCNEvgaevLF----------VNGS 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 76 DERgIDVVRGKIKEFARTAPIGGGGfKIIFLDEAD-ALTSAAQAALRRTMEKYSRTCRFVLSCNYSSKIIEPIQSRCAVF 154
Cdd:PHA02544 78 DCR-IDFVRNRLTRFASTVSLTGGG-KVIIIDEFDrLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVI 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 155 RFR--------PLQGEDVQRyLKFIAGREKLKVNDDAYEALAYLAQGDLRRAINSLQMAAAA---DKDITSEVVyqavsa 223
Cdd:PHA02544 156 DFGvptkeeqiEMMKQMIVR-CKGILEAEGVEVDMKVLAALVKKNFPDFRRTINELQRYASTgkiDAGILSEVT------ 228
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 167045379 224 arPGEVREVLELALQGNFAGARerldALIITYGLAGEDILRQMHRTVRElEIPDEAKVQLIEKLAE 289
Cdd:PHA02544 229 --NSDIDDVVEALKAKDFKAVR----ALAPNYANDYASFVGKLYDELYP-QVTPPSIIRLIEIIGE 287
|
|
| PRK04195 |
PRK04195 |
replication factor C large subunit; Provisional |
5-217 |
5.07e-44 |
|
replication factor C large subunit; Provisional
Pssm-ID: 235250 [Multi-domain] Cd Length: 482 Bit Score: 157.00 E-value: 5.07e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 5 WVEKYRPATLAEVVGQSVVTTRLASYVRE--KSMPH--LLFAGPPGTGKTTCSLALAREMFGEhwqhnLHELNASDERGI 80
Cdd:PRK04195 4 WVEKYRPKTLSDVVGNEKAKEQLREWIESwlKGKPKkaLLLYGPPGVGKTSLAHALANDYGWE-----VIELNASDQRTA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 81 DVVRGKIKEFARTAPIGGGGFKIIFLDEADAL-----TSAAQAALRrtMEKYSRTcRFVLSCN-YSSKIIEPIQSRCAVF 154
Cdd:PRK04195 79 DVIERVAGEAATSGSLFGARRKLILLDEVDGIhgnedRGGARAILE--LIKKAKQ-PIILTANdPYDPSLRELRNACLMI 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 167045379 155 RFRPLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAINSLQMAAAADKDITSEVV 217
Cdd:PRK04195 156 EFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDV 218
|
|
| DnaX |
COG2812 |
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair]; |
11-273 |
8.24e-37 |
|
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];
Pssm-ID: 442061 [Multi-domain] Cd Length: 340 Bit Score: 134.55 E-value: 8.24e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 11 PATLAEVVGQSVVTTRLASYVREKSMPH-LLFAGPPGTGKTTCSLALAREMFGEHWQ------------------H-NLH 70
Cdd:COG2812 6 PQTFDDVVGQEHVVRTLKNALASGRLAHaYLFTGPRGVGKTTLARILAKALNCENGPtgepcgecescraiaagsHpDVI 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 71 EL--NASdERGIDVVRgKIKEFARTAPIGGGgFKIIFLDEADALTSAAQAALRRTME------KysrtcrFVLSCNYSSK 142
Cdd:COG2812 86 EIdaEAS-NIGVDDIR-ELIEKVSYAPVEGR-YKVYIIDEAHMLTTEAFNALLKTLEeppphvV------FILATTEPQK 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 143 IIEPIQSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAInSLqmaaaADKDITSEVVyqavs 222
Cdd:COG2812 157 LLPTILSRCQRFDFRRLPPEEIAEHLAKIAEREGIEIEPEALALIARAADGSMRDAL-SL-----LDQAIAFGLL----- 225
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 167045379 223 aARPGEVREVLELALQGNFAGARERLDALiITYGLAGEDILRQMHRTVREL 273
Cdd:COG2812 226 -DRRELLLDLLEALLAGDVAALLALAEEL-AKRGRDLKRFLDDLLSLLRDL 274
|
|
| PRK14953 |
PRK14953 |
DNA polymerase III subunits gamma and tau; Provisional |
1-251 |
4.74e-35 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237867 [Multi-domain] Cd Length: 486 Bit Score: 132.64 E-value: 4.74e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 1 MEEIWVEKYRPATLAEVVGQSVVTTRLASYVREKSMPH-LLFAGPPGTGKTTCSLALAREMFGEHWQH------------ 67
Cdd:PRK14953 2 MYIPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHaYIFAGPRGTGKTTIARILAKVLNCLNPQEgepcgkcencve 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 68 -------NLHELNASDERGIDVVRGkIKEFARTAPIGGGgFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNYS 140
Cdd:PRK14953 82 idkgsfpDLIEIDAASNRGIDDIRA-LRDAVSYTPIKGK-YKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEY 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 141 SKIIEPIQSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAINSL-QMAAAADKDITSEVVYQ 219
Cdd:PRK14953 160 DKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLdQASTYGEGKVTIKVVEE 239
|
250 260 270
....*....|....*....|....*....|..
gi 167045379 220 AVSAARPGEVREVLELALQGNFAGARERLDAL 251
Cdd:PRK14953 240 FLGIVSQESVRKFLNLLLESDVDEAIKFLRTL 271
|
|
| PRK14970 |
PRK14970 |
DNA polymerase III subunits gamma and tau; Provisional |
1-200 |
2.35e-32 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184934 [Multi-domain] Cd Length: 367 Bit Score: 123.45 E-value: 2.35e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 1 MEEIWV--EKYRPATLAEVVGQSVVTTRLASYVREKSMPH-LLFAGPPGTGKTTCSLALAREMF-------GEHWQHNLH 70
Cdd:PRK14970 1 MENFVVsaRKYRPQTFDDVVGQSHITNTLLNAIENNHLAQaLLFCGPRGVGKTTCARILARKINqpgyddpNEDFSFNIF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 71 ELNASDERGIDVVRGKIKEfARTAPiGGGGFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNYSSKIIEPIQSR 150
Cdd:PRK14970 81 ELDAASNNSVDDIRNLIDQ-VRIPP-QTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSR 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 167045379 151 CAVFRFRPLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAIN 200
Cdd:PRK14970 159 CQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALS 208
|
|
| PRK14962 |
PRK14962 |
DNA polymerase III subunits gamma and tau; Provisional |
1-235 |
2.52e-31 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237869 [Multi-domain] Cd Length: 472 Bit Score: 122.18 E-value: 2.52e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 1 MEEIWvEKYRPATLAEVVGQSVVTTRLASYVREKSMPH-LLFAGPPGTGKTTCSLALAREMFGEHWQH------------ 67
Cdd:PRK14962 1 MEALY-RKYRPKTFSEVVGQDHVKKLIINALKKNSISHaYIFAGPRGTGKTTVARILAKSLNCENRKGvepcnecracrs 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 68 -------NLHELNASDERGIDVVRgKIKEFARTAPIGGGgFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNYS 140
Cdd:PRK14962 80 idegtfmDVIELDAASNRGIDEIR-KIRDAVGYRPMEGK-YKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 141 SKIIEPIQSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAINSL-QMAAAADKDITSEVVYQ 219
Cdd:PRK14962 158 EKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLeQVWKFSEGKITLETVHE 237
|
250 260
....*....|....*....|....*...
gi 167045379 220 A------------VSAARPGEVREVLEL 235
Cdd:PRK14962 238 AlglipievvrdyINAIFNGDVKRVFTV 265
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
8-221 |
4.71e-31 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 122.96 E-value: 4.71e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 8 KYRPATLAEVVGQSVVTTRLASYVREKSMPH-LLFAGPPGTGKTTCSLALAREM--------------------FGEHWQ 66
Cdd:PRK14971 10 KYRPSTFESVVGQEALTTTLKNAIATNKLAHaYLFCGPRGVGKTTCARIFAKTIncqnltadgeacnecescvaFNEQRS 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 67 HNLHELNASDERGIDVVRGKIkEFARTAPiGGGGFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNYSSKIIEP 146
Cdd:PRK14971 90 YNIHELDAASNNSVDDIRNLI-EQVRIPP-QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPT 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 167045379 147 IQSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAINSL-QMAAAADKDITsevvYQAV 221
Cdd:PRK14971 168 ILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFdQVVSFTGGNIT----YKSV 239
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
7-221 |
2.36e-30 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 118.65 E-value: 2.36e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 7 EKYRPATLAEVVGQSVVT---TRLASYVREKSMPHLLFAGPPGTGKTTCSLALAREMfgehwqhNLH--ELNASDErGID 81
Cdd:PRK13342 4 ERMRPKTLDEVVGQEHLLgpgKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT-------DAPfeALSAVTS-GVK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 82 VVRGKIKEfARTAPIGGGGFkIIFLDEADALTSAAQAALRRTMEkySRTCRFVLSC--NYSSKIIEPIQSRCAVFRFRPL 159
Cdd:PRK13342 76 DLREVIEE-ARQRRSAGRRT-ILFIDEIHRFNKAQQDALLPHVE--DGTITLIGATteNPSFEVNPALLSRAQVFELKPL 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 167045379 160 QGEDVQRYLKFI---AGREKLKVNDDAYEALAYLAQGDLRRAINSLQMAAAADKDITSEVVYQAV 221
Cdd:PRK13342 152 SEEDIEQLLKRAledKERGLVELDDEALDALARLANGDARRALNLLELAALGVDSITLELLEEAL 216
|
|
| PRK05896 |
PRK05896 |
DNA polymerase III subunits gamma and tau; Validated |
1-251 |
4.32e-29 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235638 [Multi-domain] Cd Length: 605 Bit Score: 117.25 E-value: 4.32e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 1 MEEIWVEKYRPATLAEVVGQSVVTTRLASYVREKSMPH-LLFAGPPGTGKTTCSLALAR-------------------EM 60
Cdd:PRK05896 2 SEITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHaYIFSGPRGIGKTSIAKIFAKainclnpkdgdccnscsvcES 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 61 FGEHWQHNLHELNASDERGIDVVRgKIKEFARTAPIGGGgFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNYS 140
Cdd:PRK05896 82 INTNQSVDIVELDAASNNGVDEIR-NIIDNINYLPTTFK-YKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 141 SKIIEPIQSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAINSL-QMAAAADKDITSEVVYQ 219
Cdd:PRK05896 160 QKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILdQLSTFKNSEIDIEDINK 239
|
250 260 270
....*....|....*....|....*....|..
gi 167045379 220 AVSAARPGEVREVLELALQGNFAGARERLDAL 251
Cdd:PRK05896 240 TFGLVDNNKKINLIELIQKNDIEELRNLINEL 271
|
|
| Rep_fac_C |
pfam08542 |
Replication factor C C-terminal domain; This is the C-terminal domain of RFC (replication ... |
224-310 |
1.16e-26 |
|
Replication factor C C-terminal domain; This is the C-terminal domain of RFC (replication factor-C) protein of the clamp loader complex which binds to the DNA sliding clamp (proliferating cell nuclear antigen, PCNA). The five modules of RFC assemble into a right-handed spiral, which results in only three of the five RFC subunits (RFC-A, RFC-B and RFC-C) making contact with PCNA, leaving a wedge-shaped gap between RFC-E and the PCNA clamp-loader complex. The C-terminal is vital for the correct orientation of RFC-E with respect to RFC-A.
Pssm-ID: 462513 [Multi-domain] Cd Length: 87 Bit Score: 100.63 E-value: 1.16e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 224 ARPGEVREVLELALQGNFAGARERLDALIITYGLAGEDILRQMHRTVRELEIPDEAKVQLIEKLAEVDFRLSEGATARIQ 303
Cdd:pfam08542 1 PHPEDIEEILNSCLNGDFDEAYKKVRELLVEKGYSLQDIITQLHRVVKSLDLPEEVKLELLEKLGEIEYRLSEGASEKLQ 80
|
....*..
gi 167045379 304 IEAAIAH 310
Cdd:pfam08542 81 LSALLAA 87
|
|
| PRK07133 |
PRK07133 |
DNA polymerase III subunits gamma and tau; Validated |
5-217 |
5.20e-23 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235943 [Multi-domain] Cd Length: 725 Bit Score: 99.51 E-value: 5.20e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 5 WVEKYRPATLAEVVGQSVVTTRLASYVREKSMPH-LLFAGPPGTGKTTCSLALAREMFGEH--------------WQHNL 69
Cdd:PRK07133 8 LYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHaYLFSGPRGTGKTSVAKIFANALNCSHktdllepcqecienVNNSL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 70 H--ELNASDERGIDVVRgKIKEFARTAPIgGGGFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNYSSKIIEPI 147
Cdd:PRK07133 88 DiiEMDAASNNGVDEIR-ELIENVKNLPT-QSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTI 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 167045379 148 QSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAINSL-QMAAAADKDITSEVV 217
Cdd:PRK07133 166 LSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAeQVSIFGNNKITLKNV 236
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
18-151 |
2.99e-22 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 91.05 E-value: 2.99e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 18 VGQSVVTTRLASYVREKSMPHLLFAGPPGTGKTTCSLALAREMFgeHWQHNLHELNASDERGIDVVRGKIKEFARTAPIG 97
Cdd:cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFE 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 167045379 98 ---GGGFKIIFLDEADALTSAAQAALRRTMEKYSRT------CRFVLSCNYSS--KIIEPIQSRC 151
Cdd:cd00009 79 laeKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLridrenVRVIGATNRPLlgDLDRALYDRL 143
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
8-272 |
1.45e-21 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 95.26 E-value: 1.45e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 8 KYRPATLAEVVGQSVVTTRLASYVREKSMPH-LLFAGPPGTGKTTCSLALAREMFGEHWQHNLH---------------- 70
Cdd:PRK14950 9 KWRSQTFAELVGQEHVVQTLRNAIAEGRVAHaYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRpcgtcemcraiaegsa 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 71 ----ELNASDERGIDVVRgKIKEFARTAPiGGGGFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNYSSKIIEP 146
Cdd:PRK14950 89 vdviEMDAASHTSVDDAR-EIIERVQFRP-ALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPAT 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 147 IQSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAINSL-QMAAAADKDITSEVVYQAVSAAR 225
Cdd:PRK14950 167 ILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLqQLATTYGGEISLSQVQSLLGISG 246
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 167045379 226 PGEVREVLELALQGNFAGARERLDALIItyglAGEDiLRQMHRTVRE 272
Cdd:PRK14950 247 DEEVKALAEALLAKDLKAALRTLNAVAA----DGAD-LRQFTRDLVE 288
|
|
| RarA |
COG2256 |
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ... |
10-221 |
1.64e-21 |
|
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];
Pssm-ID: 441857 [Multi-domain] Cd Length: 439 Bit Score: 94.35 E-value: 1.64e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 10 RPATLAEVVGQSVVTTR---LASYVREKSMPHLLFAGPPGTGKTTCSLALAREMfgehwQHNLHELNASDErGIDVVRGK 86
Cdd:COG2256 20 RPRTLDEVVGQEHLLGPgkpLRRAIEAGRLSSMILWGPPGTGKTTLARLIANAT-----DAEFVALSAVTS-GVKDIREV 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 87 IKEfARTAPIGGGGFkIIFLDEADALTSAAQAALRRTMEKysRTCRFVLSC--NYSSKIIEPIQSRCAVFRFRPLQGED- 163
Cdd:COG2256 94 IEE-ARERRAYGRRT-ILFVDEIHRFNKAQQDALLPHVED--GTITLIGATteNPSFEVNSALLSRCRVFVLKPLSEEDl 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 167045379 164 ---VQRYLKFIA---GREKLKVNDDAYEALAYLAQGDLRRAINSLQMAAAADKD-----ITSEVVYQAV 221
Cdd:COG2256 170 eqlLERALADDErglGGYKLELDDEALEALARLADGDARRALNALELAVLSAPPdgvieITLELVEEAL 238
|
|
| PRK06305 |
PRK06305 |
DNA polymerase III subunits gamma and tau; Validated |
8-246 |
6.67e-21 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180523 [Multi-domain] Cd Length: 451 Bit Score: 92.53 E-value: 6.67e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 8 KYRPATLAEVVGQSVVTTRLASYVREKSMPH-LLFAGPPGTGKTTCSLALAREMFGEHWQHNLH---------------- 70
Cdd:PRK06305 10 KYRPQTFSEILGQDAVVAVLKNALRFNRAAHaYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEpcnqcasckeissgts 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 71 ----ELNASDERGIDVVRgKIKEFARTAPIGGGgFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNYSSKIIEP 146
Cdd:PRK06305 90 ldvlEIDGASHRGIEDIR-QINETVLFTPSKSR-YKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGT 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 147 IQSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAiNSL--QMAAAADKDITSEVVYQAVSAA 224
Cdd:PRK06305 168 ILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDA-ESLydYVVGLFPKSLDPDSVAKALGLL 246
|
250 260
....*....|....*....|..
gi 167045379 225 RPGEVREVLELALQGNFAGARE 246
Cdd:PRK06305 247 SQDSLYTLDEAITTQNYAQALE 268
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
3-207 |
7.53e-21 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 93.23 E-value: 7.53e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 3 EIWVEKYRPATLAEVVGQSVVTTRLASYVREKSMPH-LLFAGPPGTGKTTCSLALAREMFGEHWQH-------------- 67
Cdd:PRK08691 4 QVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHaYLLTGTRGVGKTTIARILAKSLNCENAQHgepcgvcqsctqid 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 68 -----NLHELNASDERGIDVVRgKIKEFARTAPIGGGgFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNYSSK 142
Cdd:PRK08691 84 agryvDLLEIDAASNTGIDNIR-EVLENAQYAPTAGK-YKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHK 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 167045379 143 IIEPIQSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAINSLQMAAA 207
Cdd:PRK08691 162 VPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIA 226
|
|
| PRK14960 |
PRK14960 |
DNA polymerase III subunit gamma/tau; |
1-302 |
1.86e-20 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237868 [Multi-domain] Cd Length: 702 Bit Score: 92.03 E-value: 1.86e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 1 MEEIWVEKYRPATLAEVVGQSVVTTRLASYVREKSMPH-LLFAGPPGTGKTTCSLALAREMFGEHWQHNLH-ELNAS--- 75
Cdd:PRK14960 1 MYQVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHaYLFTGTRGVGKTTIARILAKCLNCETGVTSTPcEVCATcka 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 76 --DERGIDVV------RGKI---KEFARTAPIG--GGGFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNYSSK 142
Cdd:PRK14960 81 vnEGRFIDLIeidaasRTKVedtRELLDNVPYAptQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 143 IIEPIQSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAINslqmaaaadkdITSEVVYQAVS 222
Cdd:PRK14960 161 LPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALS-----------LTDQAIAYGQG 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 223 AARPGEVREVLEL-----------ALQGNfagARERLDALIITYGLAGED---ILRQMHRTVRELeipdeakvQLIEKLA 288
Cdd:PRK14960 230 AVHHQDVKEMLGLidrtiiydlilAVHQN---QREKVSQLLLQFRYQALDvslVLDQLISTLHEL--------ALLQYLP 298
|
330
....*....|....
gi 167045379 289 EVDFRLSEGATARI 302
Cdd:PRK14960 299 ELGLKYSEEINAKI 312
|
|
| PRK06645 |
PRK06645 |
DNA polymerase III subunits gamma and tau; Validated |
5-234 |
1.88e-20 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180643 [Multi-domain] Cd Length: 507 Bit Score: 91.46 E-value: 1.88e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 5 WVEKYRPATLAEVVGQSVVTTRLA-SYVREKSMPHLLFAGPPGTGKTTCSLALAREM----------------------- 60
Cdd:PRK06645 11 FARKYRPSNFAELQGQEVLVKVLSyTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVncsalitenttiktceqctncis 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 61 FGEHWQHNLHELNASDERGIDVVRgKIKEFARTAPIGGGgFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNYS 140
Cdd:PRK06645 91 FNNHNHPDIIEIDAASKTSVDDIR-RIIESAEYKPLQGK-HKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEV 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 141 SKIIEPIQSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAINSLQ----MAAAADKDITSEV 216
Cdd:PRK06645 169 QKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDqaasMSAKSDNIISPQV 248
|
250
....*....|....*...
gi 167045379 217 VYQAVSAARPGEVREVLE 234
Cdd:PRK06645 249 INQMLGLVDSSVIIEFVE 266
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
8-273 |
7.35e-20 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 90.12 E-value: 7.35e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 8 KYRPATLAEVVGQSVVTTRLASYVRE-KSMPHLLFAGPPGTGKTTCSLALAREM---------------------FGEHW 65
Cdd:PRK14959 9 RYRPQTFAEVAGQETVKAILSRAAQEnRVAPAYLFSGTRGVGKTTIARIFAKALncetaptgepcntceqcrkvtQGMHV 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 66 qhNLHELNASDERGIDVVRgKIKEFARTAPIGGGgFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNYSSKIIE 145
Cdd:PRK14959 89 --DVVEIDGASNRGIDDAK-RLKEAIGYAPMEGR-YKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPV 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 146 PIQSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAINSL-QMAAAADKDITSEVVYQAVSAA 224
Cdd:PRK14959 165 TIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLgQVLALGESRLTIDGARGVLGLA 244
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 167045379 225 RPGEVREVLE-LALQGNFAGA---RERLDaliityglAGEDI---LRQMHRTVREL 273
Cdd:PRK14959 245 GQELFLRLMEaLAAQDCLGVAnvvRELLD--------RGVDMgffLRELVATWRNL 292
|
|
| PRK14955 |
PRK14955 |
DNA polymerase III subunits gamma and tau; Provisional |
8-222 |
3.86e-19 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184919 [Multi-domain] Cd Length: 397 Bit Score: 87.26 E-value: 3.86e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 8 KYRPATLAEVVGQSVVTTRLASYVREKSMPH-LLFAGPPGTGKTTCSLALAREM-------------------------- 60
Cdd:PRK14955 9 KYRPKKFADITAQEHITRTIQNSLRMGRVGHgYIFSGLRGVGKTTAARVFAKAVncqrmiddadylqevtepcgecescr 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 61 -FGEHWQHNLHELNASDERGIDVVRgKIKEFARTAPiGGGGFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNY 139
Cdd:PRK14955 89 dFDAGTSLNISEFDAASNNSVDDIR-LLRENVRYGP-QKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTE 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 140 SSKIIEPIQSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAINSLQ--MAAAADKDITSEVV 217
Cdd:PRK14955 167 LHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDqvIAFSVESEGEGSIR 246
|
....*
gi 167045379 218 YQAVS 222
Cdd:PRK14955 247 YDKVA 251
|
|
| PRK14963 |
PRK14963 |
DNA polymerase III subunits gamma and tau; Provisional |
7-310 |
6.48e-19 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184927 [Multi-domain] Cd Length: 504 Bit Score: 87.20 E-value: 6.48e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 7 EKYRPATLAEVVGQSVVTTRLASYVREKSMPH-LLFAGPPGTGKTTCS--LALAREMFGE---------------HWQH- 67
Cdd:PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQGRLGHaYLFSGPRGVGKTTTArlIAMAVNCSGEdpkpcgecesclavrRGAHp 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 68 NLHELNASDERGIDVVRgKIKEFARTAPIGGGGfKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNYSSKIIEPI 147
Cdd:PRK14963 86 DVLEIDAASNNSVEDVR-DLREKVLLAPLRGGR-KVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTI 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 148 QSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAINSLQMAAAADKDITSEVVYQAVSAArPG 227
Cdd:PRK14963 164 LSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLALGTPVTRKQVEEALGLP-PQ 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 228 E-VREVLELALQGNFAGARERLDALiITYGLAGEDILRQMHRTVRE-------------LEIPDEAKVQLIEKLAEVDFR 293
Cdd:PRK14963 243 ErLRGIAAALAQGDAAEALSGAAQL-YRDGFAARTLVEGLLEAFRAalyaelglgggprLEGAEPRLLAAMTALDEQMER 321
|
330
....*....|....*..
gi 167045379 294 LSEGATArIQIEAAIAH 310
Cdd:PRK14963 322 FARRSDA-LSLELALLH 337
|
|
| PRK14948 |
PRK14948 |
DNA polymerase III subunit gamma/tau; |
8-198 |
3.48e-18 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 85.01 E-value: 3.48e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 8 KYRPATLAEVVGQSVVTTRLASYVR-EKSMPHLLFAGPPGTGKT------------------------TCSL-------- 54
Cdd:PRK14948 9 KYRPQRFDELVGQEAIATTLKNALIsNRIAPAYLFTGPRGTGKTssarilakslnclnsdkptpepcgKCELcraiaagn 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 55 ALaremfgehwqhNLHELNASDERGIDVVRGKIkEFARTAPIGGGgFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFV 134
Cdd:PRK14948 89 AL-----------DVIEIDAASNTGVDNIRELI-ERAQFAPVQAR-WKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFV 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 167045379 135 LSCNYSSKIIEPIQSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRA 198
Cdd:PRK14948 156 LATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDA 219
|
|
| HLD_clamp_RFC |
cd18140 |
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein ... |
159-221 |
4.89e-18 |
|
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein clamp loader complex that forms a stable ATP-dependent complex with the sliding clamp, PCNA, which binds specifically to primed DNA. RFC subunits belong to the clamp loader clade of the AAA+ superfamily.
Pssm-ID: 350842 [Multi-domain] Cd Length: 63 Bit Score: 76.80 E-value: 4.89e-18
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 167045379 159 LQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAINSLQMAAAADKDITSEVVYQAV 221
Cdd:cd18140 1 LSKEQIVKRLREICKKEGVKIDEEALEAIAEKSEGDMRKAINDLQAAAAGGGVITEEDVYEVA 63
|
|
| PRK14956 |
PRK14956 |
DNA polymerase III subunits gamma and tau; Provisional |
3-205 |
7.01e-18 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184920 [Multi-domain] Cd Length: 484 Bit Score: 83.84 E-value: 7.01e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 3 EIWVEKYRPATLAEVVGQSVVTTRLASYVREKSMPH-LLFAGPPGTGKTTCSLALAREMFGEHWQHN------------- 68
Cdd:PRK14956 6 EVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHaYIFFGPRGVGKTTIARILAKRLNCENPIGNepcnectscleit 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 69 ------LHELNASDERGIDVVRgKIKEFARTAPIGGGgFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNYSSK 142
Cdd:PRK14956 86 kgissdVLEIDAASNRGIENIR-ELRDNVKFAPMGGK-YKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHK 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 167045379 143 IIEPIQSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAINSLQMA 205
Cdd:PRK14956 164 IPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQA 226
|
|
| PRK06647 |
PRK06647 |
DNA polymerase III subunits gamma and tau; Validated |
8-308 |
1.31e-17 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235845 [Multi-domain] Cd Length: 563 Bit Score: 83.28 E-value: 1.31e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 8 KYRPATLAEVVGQSVVTTRLASYVREKSMPH-LLFAGPPGTGKTTCSLALAR----------EMFGEHWQ---------H 67
Cdd:PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIESNKIANaYIFSGPRGVGKTSSARAFARclncvngptpMPCGECSScksidndnsL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 68 NLHELNASDERGIDVVRgKIKEFARTAPiGGGGFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNYSSKIIEPI 147
Cdd:PRK06647 89 DVIEIDGASNTSVQDVR-QIKEEIMFPP-ASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATI 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 148 QSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAINSL-QMAAAADKDITSEVVYQAVSAARP 226
Cdd:PRK06647 167 KSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFdQVVSFSDSDITLEQIRSKMGLTGD 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 227 GEVREVLELALQGNFAGARERLDALIITyGLAGEDILRQMHRTVREL-----EIPDEAKV-----QLIEKLAEvdFRLSe 296
Cdd:PRK06647 247 EFLEKLASSILNEDAKELLCVLDSVFLS-GVSVEQFLLDCIEFFRELlflkhGIKNEAFIgikaeRLPEKLRE--FDLS- 322
|
330
....*....|..
gi 167045379 297 gatariQIEAAI 308
Cdd:PRK06647 323 ------QIERAI 328
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
39-159 |
1.40e-17 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 77.63 E-value: 1.40e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 39 LLFAGPPGTGKTTCSLALAREMfgehwQHNLHELNASDERG--IDVVRGKIKEFARTAPIGGGgfKIIFLDEADALTSA- 115
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKEL-----GAPFIEISGSELVSkyVGESEKRLRELFEAAKKLAP--CVIFIDEIDALAGSr 73
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 167045379 116 ----------AQAALRRTMEKYSRTCR---FVLSCNYSSKIIEPIQSRCAVFRFRPL 159
Cdd:pfam00004 74 gsggdsesrrVVNQLLTELDGFTSSNSkviVIAATNRPDKLDPALLGRFDRIIEFPL 130
|
|
| PRK08451 |
PRK08451 |
DNA polymerase III subunits gamma and tau; Validated |
8-251 |
2.07e-17 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236267 [Multi-domain] Cd Length: 535 Bit Score: 82.77 E-value: 2.07e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 8 KYRPATLAEVVGQSVVTTRLASYVREKSMPH-LLFAGPPGTGKTTCSLALAREMFGE------------HWQ---HNLH- 70
Cdd:PRK08451 7 KYRPKHFDELIGQESVSKTLSLALDNNRLAHaYLFSGLRGSGKTSSARIFARALVCEqgpsstpcdtciQCQsalENRHi 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 71 ---ELNASDERGIDVVRGKIkEFARTAPiGGGGFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNYSSKIIEPI 147
Cdd:PRK08451 87 diiEMDAASNRGIDDIRELI-EQTKYKP-SMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 148 QSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAINSLQMAAA-ADKDITSEVVYQAVSAARP 226
Cdd:PRK08451 165 LSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIyCKNAITESKVADMLGLLDP 244
|
250 260
....*....|....*....|....*
gi 167045379 227 GEVREVLELALQGNFAGARERLDAL 251
Cdd:PRK08451 245 SKLEDFFQAILNQDKEKLFELLKEL 269
|
|
| PRK05563 |
PRK05563 |
DNA polymerase III subunits gamma and tau; Validated |
8-264 |
1.15e-16 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235505 [Multi-domain] Cd Length: 559 Bit Score: 80.30 E-value: 1.15e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 8 KYRPATLAEVVGQSVVTTRLASYVREKSMPH-LLFAGPPGTGKTTCSLALAREMFGEHWQH------------------- 67
Cdd:PRK05563 9 KWRPQTFEDVVGQEHITKTLKNAIKQGKISHaYLFSGPRGTGKTSAAKIFAKAVNCLNPPDgepcneceickaitngslm 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 68 NLHELNASDERGIDVVRgKIKEFARTAPIgGGGFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNYSSKIIEPI 147
Cdd:PRK05563 89 DVIEIDAASNNGVDEIR-DIRDKVKYAPS-EAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATI 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 148 QSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAInSL--QMAAAADKDITSEVVYQAVSAAR 225
Cdd:PRK05563 167 LSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDAL-SIldQAISFGDGKVTYEDALEVTGSVS 245
|
250 260 270
....*....|....*....|....*....|....*....
gi 167045379 226 PGEVREVLELALQGNFAGARERLDALIitygLAGEDILR 264
Cdd:PRK05563 246 QEALDDLVDAIVEGDVAKALKILEELL----DEGKDPNR 280
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
8-222 |
1.47e-16 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 80.37 E-value: 1.47e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 8 KYRPATLAEVVGQSVVTTRLASYVREKSMPH-LLFAGPPGTGKTTCSLALAREM-------------------------- 60
Cdd:PRK14954 9 KYRPSKFADITAQEHITHTIQNSLRMDRVGHgYIFSGLRGVGKTTAARVFAKAVncqrmiddpvylqevtepcgecescr 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 61 -FGEHWQHNLHELNASDERGIDVVRgKIKEFARTAPiGGGGFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNY 139
Cdd:PRK14954 89 dFDAGTSLNISEFDAASNNSVDDIR-QLRENVRYGP-QKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTE 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 140 SSKIIEPIQSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAINSLQ--MAAAADKDITSEVV 217
Cdd:PRK14954 167 LHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDqvIAFSVGSEAEKVIA 246
|
....*
gi 167045379 218 YQAVS 222
Cdd:PRK14954 247 YQGVA 251
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
8-266 |
1.57e-16 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 80.14 E-value: 1.57e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 8 KYRPATLAEVVGQSVVTTRLASYVREKSMPH-LLFAGPPGTGKTTCSLALAREM--FGEHWQHNLH-------------- 70
Cdd:PRK14951 9 KYRPRSFSEMVGQEHVVQALTNALTQQRLHHaYLFTGTRGVGKTTVSRILAKSLncQGPDGQGGITatpcgvcqacrdid 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 71 --------ELNASDERGIDVVRGKIkEFARTAPIGGGgFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNYSSK 142
Cdd:PRK14951 89 sgrfvdytELDAASNRGVDEVQQLL-EQAVYKPVQGR-FKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 143 IIEPIQSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAInSL--QMAAAADKDITSEVVYQA 220
Cdd:PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDAL-SLtdQAIAFGSGQLQEAAVRQM 245
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 167045379 221 VSAARPGEVREVLELALQGNFAGARERLDALiITYGLAGEDILRQM 266
Cdd:PRK14951 246 LGSVDRSHVFRLIDALAQGDGRTVVETADEL-RLNGLSAASTLEEM 290
|
|
| PRK14952 |
PRK14952 |
DNA polymerase III subunits gamma/tau; |
8-215 |
1.87e-16 |
|
DNA polymerase III subunits gamma/tau;
Pssm-ID: 237866 [Multi-domain] Cd Length: 584 Bit Score: 79.92 E-value: 1.87e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 8 KYRPATLAEVVGQSVVTTRLASYVREKSMPH-LLFAGPPGTGKTTCSLALAREM-------------------FGEHWQH 67
Cdd:PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALDAGRINHaYLFSGPRGCGKTSSARILARSLncaqgptatpcgvcescvaLAPNGPG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 68 NLH--ELNASDERGIDVVRgKIKEFARTAPiGGGGFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNYSSKIIE 145
Cdd:PRK14952 86 SIDvvELDAASHGGVDDTR-ELRDRAFYAP-AQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLP 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 167045379 146 PIQSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAINSLQ--MAAAADKDITSE 215
Cdd:PRK14952 164 TIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDqlLAGAADTHVTYQ 235
|
|
| PRK14961 |
PRK14961 |
DNA polymerase III subunits gamma and tau; Provisional |
3-217 |
2.84e-16 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184925 [Multi-domain] Cd Length: 363 Bit Score: 78.31 E-value: 2.84e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 3 EIWVEKYRPATLAEVVGQSVVTTRLASYVREKSMPHL-LFAGPPGTGKTTCSLALAREM----------------FGEHW 65
Cdd:PRK14961 4 QILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAwLLSGTRGVGKTTIARLLAKSLncqngitsnpcrkciiCKEIE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 66 QHN---LHELNASDERGIDVVRgKIKEFARTAPIGGGgFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNYSSK 142
Cdd:PRK14961 84 KGLcldLIEIDAASRTKVEEMR-EILDNIYYSPSKSR-FKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEK 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 167045379 143 IIEPIQSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAINSL-QMAAAADKDITSEVV 217
Cdd:PRK14961 162 IPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLeHAINLGKGNINIKNV 237
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
1-49 |
4.47e-16 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 79.11 E-value: 4.47e-16
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 167045379 1 MEEIWVEKYRPATLAEVVGQSVVTTRLASYVREKSMPHLLFAGPPGTGK 49
Cdd:PRK04132 5 LEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGK 53
|
|
| PRK14957 |
PRK14957 |
DNA polymerase III subunits gamma and tau; Provisional |
8-205 |
6.13e-16 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184921 [Multi-domain] Cd Length: 546 Bit Score: 78.20 E-value: 6.13e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 8 KYRPATLAEVVGQSVVTTRLASYVREKSMPH-LLFAGPPGTGKTTCSLALAREM-------------------FGEHWQH 67
Cdd:PRK14957 9 KYRPQSFAEVAGQQHALNSLVHALETQKVHHaYLFTGTRGVGKTTLGRLLAKCLncktgvtaepcnkcencvaINNNSFI 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 68 NLHELNASDERGIDVVRgKIKEFARTAPiGGGGFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNYSSKIIEPI 147
Cdd:PRK14957 89 DLIEIDAASRTGVEETK-EILDNIQYMP-SQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTI 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 167045379 148 QSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAINSLQMA 205
Cdd:PRK14957 167 LSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQA 224
|
|
| PRK14964 |
PRK14964 |
DNA polymerase III subunits gamma and tau; Provisional |
8-215 |
5.40e-15 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237870 [Multi-domain] Cd Length: 491 Bit Score: 75.21 E-value: 5.40e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 8 KYRPATLAEVVGQSVVTTRLASYVREKSMPH-LLFAGPPGTGKTTC----SLALAREmFG---------------EHWQH 67
Cdd:PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFTLNKIPQsILLVGASGVGKTTCariiSLCLNCS-NGptsdpcgtchncisiKNSNH 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 68 -NLHELNASDERGIDVVRgKIKEFARTAPIGGGgFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNYSSKIIEP 146
Cdd:PRK14964 85 pDVIEIDAASNTSVDDIK-VILENSCYLPISSK-FKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVT 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 167045379 147 IQSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAINSLQMAAAADKDITSE 215
Cdd:PRK14964 163 IISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISE 231
|
|
| PRK14965 |
PRK14965 |
DNA polymerase III subunits gamma and tau; Provisional |
8-223 |
1.07e-14 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 74.39 E-value: 1.07e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 8 KYRPATLAEVVGQSVVTTRLASYVREKSMPH-LLFAGPPGTGKTTCSLALAREMFGEHWQH------------------- 67
Cdd:PRK14965 9 KYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHaFLFTGARGVGKTSTARILAKALNCEQGLTaepcnvcppcveitegrsv 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 68 NLHELNASDERGIDVVRgKIKEFARTAPiGGGGFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNYSSKIIEPI 147
Cdd:PRK14965 89 DVFEIDGASNTGVDDIR-ELRENVKYLP-SRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITI 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 167045379 148 QSRCAVFRFR--PLQgEDVQRyLKFIAGREKLKVNDDAYEALAYLAQGDLRRAINSL-QMAAAADKDITSEVVYQAVSA 223
Cdd:PRK14965 167 LSRCQRFDFRriPLQ-KIVDR-LRYIADQEGISISDAALALVARKGDGSMRDSLSTLdQVLAFCGDAVGDDDVAELLGV 243
|
|
| HolA |
COG1466 |
DNA polymerase III, delta subunit [Replication, recombination and repair]; |
55-273 |
1.46e-13 |
|
DNA polymerase III, delta subunit [Replication, recombination and repair];
Pssm-ID: 441075 [Multi-domain] Cd Length: 305 Bit Score: 69.90 E-value: 1.46e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 55 ALAREMFGEHWQHNLHELNASDergIDVvrGKIKEFARTAPIGGGGfKIIFLDEADALT--SAAQAALRRTMEKYSRTCR 132
Cdd:COG1466 23 ALRAAALAEDDGFNRTRLDGAE---TDW--AELLDEAQTLSLFGER-RLVIVRNAEFLKkpGEGLEALEAYLANPPPDTV 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 133 FVLSCN---YSSKIIEPIQSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRA---INSLQMAA 206
Cdd:COG1466 97 LVLTAGkldKRKKLFKALEKAGVVVECYPLKERELPAWIRQRLKAAGLRIDPDAAQLLAERVGGDLLALaqeLEKLALYA 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 207 AADKDITSEVVYQAVSAARPGEVREVLELALQGNFAGARERLDALIitygLAGED---ILRQMHRTVREL 273
Cdd:COG1466 177 GDGGTITLEDVEALVGDSAEFNVFDLADALLAGDAARALRILRRLL----AEGEEpvlILAALARQFRLL 242
|
|
| PRK14969 |
PRK14969 |
DNA polymerase III subunits gamma and tau; Provisional |
8-207 |
6.12e-13 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237873 [Multi-domain] Cd Length: 527 Bit Score: 69.01 E-value: 6.12e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 8 KYRPATLAEVVGQSVVTTRLASYVREKSMPH-LLFAGPPGTGKTTCSLALAREMFGEHWQH------------------- 67
Cdd:PRK14969 9 KWRPKSFSELVGQEHVVRALTNALEQQRLHHaYLFTGTRGVGKTTLARILAKSLNCETGVTatpcgvcsacleidsgrfv 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 68 NLHELNASDERGIDVVRgKIKEFARTAPIGGGgFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNYSSKIIEPI 147
Cdd:PRK14969 89 DLIEVDAASNTQVDAMR-ELLDNAQYAPTRGR-FKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTV 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 148 QSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAINSLQMAAA 207
Cdd:PRK14969 167 LSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIA 226
|
|
| PRK09112 |
PRK09112 |
DNA polymerase III subunit delta'; Validated |
11-199 |
1.51e-12 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 169667 [Multi-domain] Cd Length: 351 Bit Score: 67.37 E-value: 1.51e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 11 PATLAEVVGQSVVTTRLASYVREKSMPH-LLFAGPPGTGKTTCSLALAREMF---------------------------G 62
Cdd:PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHaLLFEGPEGIGKATLAFHLANHILshpdpaeapetladpdpaspvwrqiaqG 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 63 EHwqHN-LHELNASDERG--------IDVVRGKIKEFARTApiGGGGFKIIFLDEADALTSAAQAALRRTMEKYSRTCRF 133
Cdd:PRK09112 99 AH--PNlLHITRPFDEKTgkfktaitVDEIRRVGHFLSQTS--GDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALF 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 167045379 134 VLSCNYSSKIIEPIQSRCAVFRFRPLQGEDVQRYLKFIAgrEKLKVNDDAYEALAYLAQGDLRRAI 199
Cdd:PRK09112 175 ILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLG--SSQGSDGEITEALLQRSKGSVRKAL 238
|
|
| PRK13341 |
PRK13341 |
AAA family ATPase; |
7-205 |
1.58e-12 |
|
AAA family ATPase;
Pssm-ID: 237354 [Multi-domain] Cd Length: 725 Bit Score: 68.16 E-value: 1.58e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 7 EKYRPATLAEVVGQ------------SVVTTRLASyvreksmphLLFAGPPGTGKTTcslaLAReMFGEHWQHNLHELNA 74
Cdd:PRK13341 20 DRLRPRTLEEFVGQdhilgegrllrrAIKADRVGS---------LILYGPPGVGKTT----LAR-IIANHTRAHFSSLNA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 75 -----SDERG-IDVVRGKIKEFA-RTapiggggfkIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNYSSKIIEPI 147
Cdd:PRK13341 86 vlagvKDLRAeVDRAKERLERHGkRT---------ILFIDEVHRFNKAQQDALLPWVENGTITLIGATTENPYFEVNKAL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 167045379 148 QSRCAVFRFRPLQGEDVQRYLK-------FIAGREKLKVNDDAYEALAYLAQGDLRRAINSLQMA 205
Cdd:PRK13341 157 VSRSRLFRLKSLSDEDLHQLLKralqdkeRGYGDRKVDLEPEAEKHLVDVANGDARSLLNALELA 221
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
8-290 |
4.56e-12 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 66.82 E-value: 4.56e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 8 KYRPATLAEVVGQSVVTTRLASYVREKSMPH-LLFAGPPGTGKTTCSLALAREM--FGEHWQHNLH-------------- 70
Cdd:PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQQRLHHaYLFTGTRGVGKTTLSRILAKSLncTGADGEGGITaqpcgqcracteid 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 71 --------ELNASDERGIDVVrGKIKEFARTAPiGGGGFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNYSSK 142
Cdd:PRK12323 89 agrfvdyiEMDAASNRGVDEM-AQLLDKAVYAP-TAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQK 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 143 IIEPIQSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAInSL--QMAAAADKDITSEVVYQA 220
Cdd:PRK12323 167 IPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDAL-SLtdQAIAYSAGNVSEEAVRGM 245
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 167045379 221 VSAARPGEVREVLELALQGNFAGARERLDALI---ITYGLAGEDILRQMHRTVRELEIP-----DEAKVQLIEKLAEV 290
Cdd:PRK12323 246 LGAIDQSYLVRLLDALAAEDGAALLAIADEMAgrsLSFAGALQDLASLLQKIALAQVVPaavqdDWPEADDIRRLAGR 323
|
|
| PRK14958 |
PRK14958 |
DNA polymerase III subunits gamma and tau; Provisional |
3-289 |
1.18e-11 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184922 [Multi-domain] Cd Length: 509 Bit Score: 65.14 E-value: 1.18e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 3 EIWVEKYRPATLAEVVGQSVVTTRLASYVREKSMPH-LLFAGPPGTGKTTCSLALAREM-------------------FG 62
Cdd:PRK14958 4 QVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHaYLFTGTRGVGKTTISRILAKCLncekgvsanpcndcencreID 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 63 EHWQHNLHELNASDERGIDVVRGKIKEFArTAPIGGGgFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNYSSK 142
Cdd:PRK14958 84 EGRFPDLFEVDAASRTKVEDTRELLDNIP-YAPTKGR-FKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHK 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 143 IIEPIQSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAINSL-QMAAAADKDITSEVVYQAV 221
Cdd:PRK14958 162 LPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLdQSIAYGNGKVLIADVKTML 241
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 167045379 222 SAARPGEVREVLE-LALQGN--FAGARERLDALIITYGLAGEDILRQMHRTVRELEIPDeakvQLIEKLAE 289
Cdd:PRK14958 242 GTIEPLLLFDILEaLAAKAGdrLLGCVTRLVEQGVDFSNALADLLSLLHQIAIIQTVPE----ALIENDSE 308
|
|
| DNA_pol3_delta2 |
pfam13177 |
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required ... |
19-159 |
1.54e-11 |
|
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA.
Pssm-ID: 433013 [Multi-domain] Cd Length: 161 Bit Score: 61.84 E-value: 1.54e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 19 GQSVVTTRLASYVREKSMPH-LLFAGPPGTGKTTCSLALAREMF---------------------GEHwqHNLHELNASD 76
Cdd:pfam13177 1 GQPEAIQLLQNSLENGRLSHaYLFSGPEGVGKLELALAFAKALFceepgddlpcgqcrscrriesGNH--PDLVIIEPEG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 77 ER-GIDVVRGKIKEFARTApiGGGGFKIIFLDEADALTSAAQAALRRTMEK-YSRTCRFVLSCNYsSKIIEPIQSRCAVF 154
Cdd:pfam13177 79 QSiKIDQIRELQKEFSKSP--YEGKKKVYIIEDAEKMTASAANSLLKFLEEpPGNTVIILLTENP-SRLLPTIRSRCQII 155
|
....*
gi 167045379 155 RFRPL 159
Cdd:pfam13177 156 RFKPL 160
|
|
| ruvB |
PRK00080 |
Holliday junction branch migration DNA helicase RuvB; |
10-60 |
4.44e-11 |
|
Holliday junction branch migration DNA helicase RuvB;
Pssm-ID: 234619 [Multi-domain] Cd Length: 328 Bit Score: 62.84 E-value: 4.44e-11
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 167045379 10 RPATLAEVVGQSVVTTRL-----ASYVREKSMPHLLFAGPPGTGKTTCSLALAREM 60
Cdd:PRK00080 20 RPKSLDEFIGQEKVKENLkifieAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM 75
|
|
| PRK07399 |
PRK07399 |
DNA polymerase III subunit delta'; Validated |
15-236 |
5.18e-11 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236011 [Multi-domain] Cd Length: 314 Bit Score: 62.61 E-value: 5.18e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 15 AEVVGQSVVTTRLASYVREKSM-PHLLFAGPPGTGKTTCSLALAREMFGE-------------------HW-----QHNL 69
Cdd:PRK07399 4 ANLIGQPLAIELLTAAIKQNRIaPAYLFAGPEGVGRKLAALCFIEGLLSQgspsknirrrleegnhpdlLWveptyQHQG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 70 HELNASD--ERG----------IDVVRGkIKEFARTAPIGGGGfKIIFLDEADALTSAAQAALRRTMEKYSRtCRFVLSC 137
Cdd:PRK07399 84 KLITASEaeEAGlkrkappqirLEQIRE-IKRFLSRPPLEAPR-KVVVIEDAETMNEAAANALLKTLEEPGN-GTLILIA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 138 NYSSKIIEPIQSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVNDdayEALAYLAQGDLRRAINSLQMAAAADKDITSEVV 217
Cdd:PRK07399 161 PSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILNINF---PELLALAQGSPGAAIANIEQLQSIPPELLQKLE 237
|
250
....*....|....*....
gi 167045379 218 YqavsaaRPGEVREVLELA 236
Cdd:PRK07399 238 Q------PPKSPLEALELA 250
|
|
| RuvB_N |
pfam05496 |
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the ... |
10-60 |
6.23e-11 |
|
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Pssm-ID: 398900 [Multi-domain] Cd Length: 159 Bit Score: 59.82 E-value: 6.23e-11
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 167045379 10 RPATLAEVVGQSVVTTRLASYV-----REKSMPHLLFAGPPGTGKTTCSLALAREM 60
Cdd:pfam05496 2 RPRTLDEYIGQEKVKENLKIFIeaakqRGEALDHVLLYGPPGLGKTTLANIIANEM 57
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
8-222 |
1.96e-10 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 61.79 E-value: 1.96e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 8 KYRPATLAEVVGQSVVTTRLASYVREKSMPH-LLFAGPPGTGKTTCSLALA--------------------REMfGEHWQ 66
Cdd:PRK07003 9 KWRPKDFASLVGQEHVVRALTHALDGGRLHHaYLFTGTRGVGKTTLSRIFAkalncetgvtsqpcgvcracREI-DEGRF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 67 HNLHELNASDERGIDVVrGKIKEFARTAPIGGGgFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNYSSKIIEP 146
Cdd:PRK07003 88 VDYVEMDAASNRGVDEM-AALLERAVYAPVDAR-FKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVT 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 167045379 147 IQSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAINSLQMAAAADkdiTSEVVYQAVS 222
Cdd:PRK07003 166 VLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYS---ANEVTETAVS 238
|
|
| PRK05564 |
PRK05564 |
DNA polymerase III subunit delta'; Validated |
16-169 |
2.56e-10 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180132 [Multi-domain] Cd Length: 313 Bit Score: 60.43 E-value: 2.56e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 16 EVVGQSVVTTRLASYVREKSMPHL-LFAGPPGTGKTTCSLALAREMFGEHWQHN---LHELNASDER--GIDVVRGKIKE 89
Cdd:PRK05564 5 TIIGHENIKNRIKNSIIKNRFSHAhIIVGEDGIGKSLLAKEIALKILGKSQQREyvdIIEFKPINKKsiGVDDIRNIIEE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 90 fARTAPIGGGGfKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNYSSKIIEPIQSRCAVFRFRPLQGEDVQRYLK 169
Cdd:PRK05564 85 -VNKKPYEGDK-KVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFIS 162
|
|
| RuvB |
COG2255 |
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, ... |
10-60 |
4.54e-10 |
|
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, recombination and repair];
Pssm-ID: 441856 [Multi-domain] Cd Length: 337 Bit Score: 59.71 E-value: 4.54e-10
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 167045379 10 RPATLAEVVGQSVVTTRLASYV-----REKSMPHLLFAGPPGTGKTTCSLALAREM 60
Cdd:COG2255 23 RPKRLDEYIGQEKVKENLKIFIeaakkRGEALDHVLLYGPPGLGKTTLAHIIANEM 78
|
|
| rad24 |
TIGR00602 |
checkpoint protein rad24; All proteins in this family for which functions are known are ... |
3-207 |
5.00e-10 |
|
checkpoint protein rad24; All proteins in this family for which functions are known are involved in DNA damage tolerance (likely cell cycle checkpoints).This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129690 [Multi-domain] Cd Length: 637 Bit Score: 60.36 E-value: 5.00e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 3 EIWVEKYRPATLAEVVGQ----SVVTTRLASYVREkSMPH--LLFAGPPGTGKTTCSLALAREMfGEHWQHNLHELN--- 73
Cdd:TIGR00602 72 EPWVEKYKPETQHELAVHkkkiEEVETWLKAQVLE-NAPKriLLITGPSGCGKSTTIKILSKEL-GIQVQEWSNPTLpdf 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 74 -ASDERGIDVVRGKI----------KEFARTAPIGG--------GGFKIIFLDEADALTSAAQAALRRTME-KYSRTCRF 133
Cdd:TIGR00602 150 qKNDHKVTLSLESCFsnfqsqievfSEFLLRATNKLqmlgddlmTDKKIILVEDLPNQFYRDTRALHEILRwKYVSIGRC 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 134 VL-----------------SCNYSSKIIEPIQSRCAVFR--FRPLQGEDVQRYLKFIAGRE------KLKVND-DAYEAL 187
Cdd:TIGR00602 230 PLvfiiteslegdnnqrrlLFPAETIMNKEILEEPRVSNisFNPIAPTIMKKFLNRIVTIEakkngeKIKVPKkTSVELL 309
|
250 260
....*....|....*....|
gi 167045379 188 AYLAQGDLRRAINSLQMAAA 207
Cdd:TIGR00602 310 CQGCSGDIRSAINSLQFSSS 329
|
|
| PRK07471 |
PRK07471 |
DNA polymerase III subunit delta'; Validated |
15-199 |
6.51e-10 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236022 [Multi-domain] Cd Length: 365 Bit Score: 59.66 E-value: 6.51e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 15 AEVVGQSVVTTRLASYVREKSMPH-LLFAGPPGTGKTTCSLALAR--------------------EMFGEH--WQH---- 67
Cdd:PRK07471 19 TALFGHAAAEAALLDAYRSGRLHHaWLIGGPQGIGKATLAYRMARfllatpppggdgavppptslAIDPDHpvARRiaag 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 68 ---NLHELNAS-DERG--------IDVVRGKIKEFARTApiGGGGFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVL 135
Cdd:PRK07471 99 ahgGLLTLERSwNEKGkrlrtvitVDEVRELISFFGLTA--AEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 167045379 136 SCNYSSKIIEPIQSRCAVFRFRPLQGEDVQRylkfIAGREKLKVNDDAYEALAYLAQGDLRRAI 199
Cdd:PRK07471 177 VSHAPARLLPTIRSRCRKLRLRPLAPEDVID----ALAAAGPDLPDDPRAALAALAEGSVGRAL 236
|
|
| HLD_clamp |
cd18133 |
helical lid domain of clamp loader-like AAA+ proteins; Clamp loader complexes are multisubunit ... |
162-221 |
7.38e-09 |
|
helical lid domain of clamp loader-like AAA+ proteins; Clamp loader complexes are multisubunit complexes that play an important role in DNA replication. They open sliding clamps for assembly and close them around DNA, specifically targeting them to sites where DNA synthesis is initiated and orienting them correctly for replication. The subunits belong to the clamp loader clade of AAA+ superfamily.
Pssm-ID: 350838 [Multi-domain] Cd Length: 65 Bit Score: 51.32 E-value: 7.38e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 167045379 162 EDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAINSLQMAAAA--DKDITSEVVYQAV 221
Cdd:cd18133 4 EQLKRRLAAIAEQEKLKLDDAALQALAYISEGDLRKALNALQRAAALgdDGKISLDRVYQAV 65
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
38-162 |
1.74e-08 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 52.76 E-value: 1.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 38 HLLFAGPPGTGKTTCSLALAREMFGEHwqHNLHELNASDERGIDVVRGKIKEFARTAPIGGGG--------------FKI 103
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGElrlrlalalarklkPDV 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 167045379 104 IFLDEADALTSAAQAALRR--------TMEKYSRTCRFVLSCNYSSKIIEPIQSRCAVFRFRPLQGE 162
Cdd:smart00382 82 LILDEITSLLDAEQEALLLlleelrllLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLIL 148
|
|
| PRK08058 |
PRK08058 |
DNA polymerase III subunit delta'; Validated |
20-168 |
2.93e-08 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181214 [Multi-domain] Cd Length: 329 Bit Score: 54.16 E-value: 2.93e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 20 QSVVTTRLASYVREKSMPH-LLFAGPPGTGKTTCSLALAREMFGEHWQHNLHELNASDERGI------DVVR-----GKI 87
Cdd:PRK08058 11 QPVVVKMLQNSIAKNRLSHaYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIdsgnhpDVHLvapdgQSI 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 88 K---------EFARTAPIGGGgfKIIFLDEADALT-SAAQAALRRTMEKYSRTCRFVLSCNYSsKIIEPIQSRCAVFRFR 157
Cdd:PRK08058 91 KkdqirylkeEFSKSGVESNK--KVYIIEHADKMTaSAANSLLKFLEEPSGGTTAILLTENKH-QILPTILSRCQVVEFR 167
|
170
....*....|.
gi 167045379 158 PLQGEDVQRYL 168
Cdd:PRK08058 168 PLPPESLIQRL 178
|
|
| ruvB |
TIGR00635 |
Holliday junction DNA helicase, RuvB subunit; All proteins in this family for which functions ... |
13-256 |
6.00e-08 |
|
Holliday junction DNA helicase, RuvB subunit; All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129721 [Multi-domain] Cd Length: 305 Bit Score: 53.07 E-value: 6.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 13 TLAEVVGQSVVTTRL-----ASYVREKSMPHLLFAGPPGTGKTTCSLALAREMfgehwqhnlhelnasdERGIDVVRG-- 85
Cdd:TIGR00635 2 LLAEFIGQEKVKEQLqlfieAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM----------------GVNLKITSGpa 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 86 --KIKEFAR--TAPIGGggfKIIFLDEADALTSAAQAALRRTMEKY-----------SRTCR-----FVL--SCNYSSKI 143
Cdd:TIGR00635 66 leKPGDLAAilTNLEEG---DVLFIDEIHRLSPAVEELLYPAMEDFrldivigkgpsARSVRldlppFTLvgATTRAGML 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 144 IEPIQSRCA-VFRFRPLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAINSLQ-----MAAAADKDITSEVV 217
Cdd:TIGR00635 143 TSPLRDRFGiILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRrvrdfAQVRGQKIINRDIA 222
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 167045379 218 YQAVSAARPGEV------REVLElALQGNFAGARERLDALIITYG 256
Cdd:TIGR00635 223 LKALEMLMIDELgldeidRKLLS-VLIEQFQGGPVGLKTLAAALG 266
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
8-58 |
1.19e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 53.07 E-value: 1.19e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 167045379 8 KYRPATLAEVVGQSVVTTRLASYVREKSMPH-LLFAGPPGTGKTTCSLALAR 58
Cdd:PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALDSGRINHaYLFSGPRGCGKTSSARILAR 59
|
|
| PRK06090 |
PRK06090 |
DNA polymerase III subunit delta'; Validated |
99-195 |
1.75e-07 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180394 [Multi-domain] Cd Length: 319 Bit Score: 51.73 E-value: 1.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 99 GGFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNYSSKIIEPIQSRCAVFRFRPLQGEDVQRYLK---FIAGRE 175
Cdd:PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKgqgITVPAY 186
|
90 100
....*....|....*....|.
gi 167045379 176 KLKVNDDA-YEALAYLAQGDL 195
Cdd:PRK06090 187 ALKLNMGSpLKTLAMMKEGGL 207
|
|
| PRK09111 |
PRK09111 |
DNA polymerase III subunits gamma and tau; Validated |
8-251 |
3.49e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236382 [Multi-domain] Cd Length: 598 Bit Score: 51.44 E-value: 3.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 8 KYRPATLAEVVGQ-SVVTTrLASYVREKSMPH-LLFAGPPGTGKTTCSLALAREM-----------------FGEHWQ-- 66
Cdd:PRK09111 17 KYRPQTFDDLIGQeAMVRT-LTNAFETGRIAQaFMLTGVRGVGKTTTARILARALnyegpdgdggptidlcgVGEHCQai 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 67 ----H-NLHELNASDERGIDVVRgKIKEFARTAPIgGGGFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNYSS 141
Cdd:PRK09111 96 megrHvDVLEMDAASHTGVDDIR-EIIESVRYRPV-SARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIR 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 142 KIIEPIQSRCAVFRFRPLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAInSL--QMAAAADKDITSEVVYQ 219
Cdd:PRK09111 174 KVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGL-SLldQAIAHGAGEVTAEAVRD 252
|
250 260 270
....*....|....*....|....*....|..
gi 167045379 220 AVSAARPGEVREVLELALQGNFAGARERLDAL 251
Cdd:PRK09111 253 MLGLADRARVIDLFEALMRGDVAAALAEFRAQ 284
|
|
| holA |
TIGR01128 |
DNA polymerase III, delta subunit; DNA polymerase III delta (holA) and delta prime (holB) ... |
70-273 |
3.73e-07 |
|
DNA polymerase III, delta subunit; DNA polymerase III delta (holA) and delta prime (holB) subunits are distinct proteins encoded by separate genes. The delta prime subunit (holB) exhibits sequence homology to the tau and gamma subunits (dnaX), but the delta subunit (holA) does not demonstrate this same homology with dnaX. The delta, delta prime, gamma, chi and psi subunits form the gamma complex subassembly of DNA polymerase III holoenzyme, which couples ATP to assemble the ring-shaped beta subunit around DNA forming a DNA sliding clamp. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273455 [Multi-domain] Cd Length: 302 Bit Score: 50.72 E-value: 3.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 70 HELNASDERGIDVVRGKIKEFARTAPIGGGGfKIIFLDEADALTSAAQA-ALRRTMEKYSRTCRFVLSCNY------SSK 142
Cdd:TIGR01128 17 DEFNVFRIDGEEFDWNQLLEEAQTLPLFSER-RLVELRNPEGKPGAKGLkALEEYLANPPPDTLLLIEAPKldkrkkLTK 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 143 IIEPIQSRCAVfRFRPLQGEDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAINSLQMAA--AADKDITSEVVYQA 220
Cdd:TIGR01128 96 WLKALKNAEIV-ECKTPKEQELPRWIQARLKKLGLRIDPDAVQLLAELVEGNLLAIAQELEKLAlyAPDGKITLEDVEEA 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 167045379 221 VSAARPGEVREVLELALQGNFAGARERLDALIitygLAGED---ILRQMHRTVREL 273
Cdd:TIGR01128 175 VSDSARFNVFDLTDALLEGKAARALRILKGLL----GEGEEpliLLALLQRQLRLL 226
|
|
| COG1223 |
COG1223 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
26-215 |
4.01e-07 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440836 [Multi-domain] Cd Length: 246 Bit Score: 50.27 E-value: 4.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 26 RLASYVREKSmPHLLFAGPPGTGKTTCSLALARE------------MFGEHW---QHNLHELnasdergidvvrgkiKEF 90
Cdd:COG1223 26 NLRKFGLWPP-RKILFYGPPGTGKTMLAEALAGElklplltvrldsLIGSYLgetARNLRKL---------------FDF 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 91 ARTAPIggggfkIIFLDEADALtsaaqaALRRT------------------MEKYSRTCRFVLSCNYSSKIIEPIQSRC- 151
Cdd:COG1223 90 ARRAPC------VIFFDEFDAI------AKDRGdqndvgevkrvvnallqeLDGLPSGSVVIAATNHPELLDSALWRRFd 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 167045379 152 AVFRFRPLQGEDVQRYLKFIAGREKLKVNDDAyEALAYLAQG----DLRRA-INSLQMAAAADKDITSE 215
Cdd:COG1223 158 EVIEFPLPDKEERKEILELNLKKFPLPFELDL-KKLAKKLEGlsgaDIEKVlKTALKKAILEDREKVTK 225
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
38-223 |
4.54e-07 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 51.07 E-value: 4.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 38 HLLFAGPPGTGKTTCSLALAREmfgehWQHNLHELNASD---------ERGIdvvRGKIKEFARTAPIggggfkIIFLDE 108
Cdd:COG0464 193 GLLLYGPPGTGKTLLARALAGE-----LGLPLIEVDLSDlvskyvgetEKNL---REVFDKARGLAPC------VLFIDE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 109 ADAL----TSAAQAALRRT-------MEKYSRTCRFVLSCNYSSKIIEPIQSRCA-VFRFRPLQGEDVQRYLKFIAGREK 176
Cdd:COG0464 259 ADALagkrGEVGDGVGRRVvntllteMEELRSDVVVIAATNRPDLLDPALLRRFDeIIFFPLPDAEERLEIFRIHLRKRP 338
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 167045379 177 LKVNDDaYEALAYLAQG----DLRRAINS--LQMAAAADKDITSEVVYQAVSA 223
Cdd:COG0464 339 LDEDVD-LEELAEATEGlsgaDIRNVVRRaaLQALRLGREPVTTEDLLEALER 390
|
|
| PRK06871 |
PRK06871 |
DNA polymerase III subunit delta'; Validated |
68-153 |
6.19e-07 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180738 [Multi-domain] Cd Length: 325 Bit Score: 50.12 E-value: 6.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 68 NLHELNASDER--GIDVVR---GKIKEFARTapiggGGFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNYSSK 142
Cdd:PRK06871 75 DFHILEPIDNKdiGVDQVReinEKVSQHAQQ-----GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAA 149
|
90
....*....|.
gi 167045379 143 IIEPIQSRCAV 153
Cdd:PRK06871 150 LLPTIYSRCQT 160
|
|
| RecA-like_protease |
cd19481 |
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
39-112 |
1.93e-06 |
|
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 46.89 E-value: 1.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 39 LLFAGPPGTGKTTCSLALAREmfgehwqHNLHELNASDERGIDVVRG-------KIKEFARTAPiggggFKIIFLDEADA 111
Cdd:cd19481 29 ILLYGPPGTGKTLLAKALAGE-------LGLPLIVVKLSSLLSKYVGeseknlrKIFERARRLA-----PCILFIDEIDA 96
|
.
gi 167045379 112 L 112
Cdd:cd19481 97 I 97
|
|
| HLD_clamp_RarA |
cd18139 |
helical lid domain of recombination factor protein RarA; Recombination factor RarA ... |
173-221 |
2.15e-06 |
|
helical lid domain of recombination factor protein RarA; Recombination factor RarA (Replication associated recombination gene/protein A, also known as MgsA (Maintenance of genome stability A) or Mgs1 in yeast and WRNIP1 in mammals) is a member of the clamp-loader clade of the AAA+ superfamily. It functions as a tetramer. RarA co-localize with the replication fork throughout the cell cycle and may play a role in the rescue of stalled replication forks.
Pssm-ID: 350841 [Multi-domain] Cd Length: 75 Bit Score: 44.93 E-value: 2.15e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 167045379 173 GREKLKVNDDAYEALAYLAQGDLRRAINSLQMAAAADKD-----ITSEVVYQAV 221
Cdd:cd18139 21 GDRKVTIDDEALELLAEAADGDARSALNLLELAVLSAEEdggivITLEDLEEVL 74
|
|
| HLD_clamp_pol_III_gamma_tau |
cd18137 |
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit ... |
162-220 |
6.95e-06 |
|
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit gamma/tau is part of the DNA polymerase III holoenzyme. Gamma and tau subunits are isoforms, both containing the helical lid domain. Gamma interacts with the delta subunit to transfer the beta subunit on the DNA while tau serves as a scaffold to help in the dimerization of the core complex. Both are members of the clamp-loader clade of the AAA+ superfamily.
Pssm-ID: 350839 [Multi-domain] Cd Length: 65 Bit Score: 42.88 E-value: 6.95e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 162 EDVQRYLKFIAGREKLKVNDDAYEALAYLAQGDLRRAINSL-QMAAAADKDITSEVVYQA 220
Cdd:cd18137 4 EDIVGRLAHILEKEGIEIEDEALELIARAAEGSMRDALSLLdQAIAFGGGRVTLDDVREM 63
|
|
| PRK08699 |
PRK08699 |
DNA polymerase III subunit delta'; Validated |
35-169 |
1.24e-05 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181538 [Multi-domain] Cd Length: 325 Bit Score: 46.40 E-value: 1.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 35 SMPH-LLFAGPPGTGKTTCSLALAREMFGE---------------HWQHN--------LHELNASDERG-------IDVV 83
Cdd:PRK08699 19 RRPNaWLFAGKKGIGKTAFARFAAQALLCEtpapghkpcgecmscHLFGQgshpdfyeITPLSDEPENGrkllqikIDAV 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 84 RGKIKEFARTAPigGGGFKIIFLDEADALTSAAQAALRRTMEKYSRTCRFVLSCNYSSKIIEPIQSRCAVFRFRPLQGED 163
Cdd:PRK08699 99 REIIDNVYLTSV--RGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEE 176
|
....*.
gi 167045379 164 VQRYLK 169
Cdd:PRK08699 177 ALAYLR 182
|
|
| Rad17 |
pfam03215 |
Rad17 P-loop domain; |
3-73 |
6.76e-05 |
|
Rad17 P-loop domain;
Pssm-ID: 367398 [Multi-domain] Cd Length: 186 Bit Score: 43.02 E-value: 6.76e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 167045379 3 EIWVEKYRPATLAEVVG-----QSVVTTRLASYVREKSMPHLLFAGPPGTGKTTCSLALAREMfGEHWQHNLHELN 73
Cdd:pfam03215 7 EQWYEKYKPNCLEQLAVhkrkiKDVQEWLDAMFLENAKHRILLISGPSGCGKSTVIKELSKEL-GPKYREWSNPTS 81
|
|
| RecA-like_ClpB_Hsp104-like |
cd19499 |
Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and ... |
15-62 |
6.23e-04 |
|
Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and eukaryotic Heat shock protein 104 (Hsp104) are ATP-dependent molecular chaperones and essential proteins of the heat-shock response. ClpB/Hsp104 ATPases, in concert with the DnaK/Hsp70 chaperone system, disaggregate and reactivate aggregated proteins. This RecA-like_ClpB_Hsp104_like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410907 [Multi-domain] Cd Length: 178 Bit Score: 39.85 E-value: 6.23e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 167045379 15 AEVVGQSVVTTRLASYVREKSMPHLLFAGPPGTGKTTCSLALAREMFG 62
Cdd:cd19499 20 VKAVSDAIRRARAGLSDPNRPIGSFLFLGPTGVGKTELAKALAELLFG 67
|
|
| ExeA |
COG3267 |
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, ... |
39-220 |
7.24e-04 |
|
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442498 [Multi-domain] Cd Length: 261 Bit Score: 40.54 E-value: 7.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 39 LLFAGPPGTGKTTCSLALAREMfGEHW--------QHNLHEL-------------NASDERGIDVVRGKIKEFARTapig 97
Cdd:COG3267 46 VVLTGEVGTGKTTLLRRLLERL-PDDVkvayipnpQLSPAELlraiadelglepkGASKADLLRQLQEFLLELAAA---- 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 98 ggGFK-IIFLDEADALTSAAQAALRR----TMEKYSRtCRFVLS------CNYSSKIIEPIQSRCAV-FRFRPLQGEDVQ 165
Cdd:COG3267 121 --GRRvVLIIDEAQNLPPETLEELRLlsnlETDSRKL-LQIVLVgqpelrERLARPELRQLRQRITArYHLRPLDREETA 197
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 167045379 166 RYLKF---IAGREKLKV-NDDAYEALAYLAQGdLRRAIN-----SLQMAAAADKD-ITSEVVYQA 220
Cdd:COG3267 198 AYIEHrlkVAGGEGDPLfTPEAIEAIYRASGG-IPRLINnlcdrALLAAYAEGKKvVDAEIVREA 261
|
|
| RecA-like_CDC48_NLV2_r1-like |
cd19503 |
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and ... |
39-115 |
7.62e-04 |
|
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and p97 or VCP metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the first of the two ATPase domains. This subfamily also includes the first of the two ATPase domains of NVL (nuclear VCP-like protein) 2, an isoform of NVL mainly present in the nucleolus, which is involved in ribosome biogenesis, in telomerase assembly and the regulation of telomerase activity, and in pre-rRNA processing. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410911 [Multi-domain] Cd Length: 165 Bit Score: 39.58 E-value: 7.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 39 LLFAGPPGTGKTTCSLALAREMFGEHWQHNLHE-----LNASDERgidvVRGKIKEFARTAPiggggfKIIFLDEADALT 113
Cdd:cd19503 37 VLLHGPPGTGKTLLARAVANEAGANFLSISGPSivskyLGESEKN----LREIFEEARSHAP------SIIFIDEIDALA 106
|
..
gi 167045379 114 SA 115
Cdd:cd19503 107 PK 108
|
|
| CDC6 |
COG1474 |
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair]; |
23-234 |
1.16e-03 |
|
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
Pssm-ID: 441083 [Multi-domain] Cd Length: 389 Bit Score: 40.22 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 23 VTTRLASYVREKSMPHLLFAGPPGTGKTTCSLALAREMfGEH---------------WQHN---------LHELNASDE- 77
Cdd:COG1474 38 LASALRPALRGERPSNVLIYGPTGTGKTAVAKYVLEEL-EEEaeergvdvrvvyvncRQAStryrvlsriLEELGSGEDi 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 78 --RGI--DVVRGKIKEFARTapiGGGGFkIIFLDEADALTSAAQ----AALRRTMEKYSRT-CRFVLSCNYSSKI--IEP 146
Cdd:COG1474 117 psTGLstDELFDRLYEALDE---RDGVL-VVVLDEIDYLVDDEGddllYQLLRANEELEGArVGVIGISNDLEFLenLDP 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 147 -IQSR--CAVFRFRPLQGEDVQRYLKfiaGREKLKVNDDAYE--------ALAYLAQGDLRRAINSLQMAA-AADKD--- 211
Cdd:COG1474 193 rVKSSlgEEEIVFPPYDADELRDILE---DRAELAFYDGVLSdevipliaALAAQEHGDARKAIDLLRVAGeIAEREgsd 269
|
250 260
....*....|....*....|....
gi 167045379 212 -ITSEVVYQAVSAARPGEVREVLE 234
Cdd:COG1474 270 rVTEEHVREAREKIERDRLLEVLR 293
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
38-120 |
1.23e-03 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 38.43 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 38 HLLFAGPPGTGKTTCSLALAREMFGEHWQH-NLHE-LNASDERGIDVVRGKIKEFARTA--PIGGGGfKIIFLDEADALT 113
Cdd:pfam07728 1 GVLLVGPPGTGKTELAERLAAALSNRPVFYvQLTRdTTEEDLFGRRNIDPGGASWVDGPlvRAAREG-EIAVLDEINRAN 79
|
....*..
gi 167045379 114 SAAQAAL 120
Cdd:pfam07728 80 PDVLNSL 86
|
|
| RecA-like_NVL_r1-like |
cd19518 |
first of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL ... |
39-137 |
1.47e-03 |
|
first of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL exists in two forms with N-terminal extensions of different lengths in mammalian cells. NVL has two alternatively spliced isoforms, a short form, NVL1, and a long form, NVL2. NVL2, the major species, is mainly present in the nucleolus, whereas NVL1 is nucleoplasmic. Each has an N-terminal domain, followed by two tandem ATPase domains; this subfamily includes the first of the two ATPase domains. NVL2 is involved in the biogenesis of the 60S ribosome subunit by associating specifically with ribosome protein L5 and modulating the function of DOB1. NVL2 is also required for telomerase assembly and the regulation of telomerase activity, and is involved in pre-rRNA processing. The role of NVL1 is unclear. This RecA-like_NVL_r1-like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410926 [Multi-domain] Cd Length: 169 Bit Score: 38.92 E-value: 1.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 39 LLFAGPPGTGKTTCSLALAREMFGEHWQHNLHEL-----NASDERgidvVRGKIKEFARTAPIggggfkIIFLDEADALT 113
Cdd:cd19518 37 VLLHGPPGCGKTMLANAIAGELKVPFLKISATEIvsgvsGESEEK----IRELFDQAISNAPC------IVFIDEIDAIT 106
|
90 100
....*....|....*....|....
gi 167045379 114 SAAQAAlRRTMEKysRTCRFVLSC 137
Cdd:cd19518 107 PKRESA-QREMER--RIVSQLLTC 127
|
|
| COG2842 |
COG2842 |
Bacteriophage DNA transposition protein, AAA+ family ATPase [Mobilome: prophages, transposons]; ... |
40-225 |
3.09e-03 |
|
Bacteriophage DNA transposition protein, AAA+ family ATPase [Mobilome: prophages, transposons];
Pssm-ID: 442090 [Multi-domain] Cd Length: 254 Bit Score: 38.39 E-value: 3.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 40 LFAGPPGTGKTTCSLALAREM-------FGEHWQHN--LHELnaSDERGIDVVRGKIKEFARTA--PIGGGGFKIIfLDE 108
Cdd:COG2842 54 VVYGESGVGKTTAAREYANRNpnviyvtASPSWTSKelLEEL--AEELGIPAPPGTIADLRDRIleRLAGTGRLLI-IDE 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 109 ADALTSAAQAALRRTMEKYsrTCRFVLSCN--YSSKI--IEPIQSRCA-VFRFRPLQGEDVQRYLKFIAGreklKVNDDA 183
Cdd:COG2842 131 ADHLKPKALEELRDIHDET--GVGVVLIGMerLPAKLkrYEQLYSRIGfWVEFKPLSLEDVRALAEAWGE----LTDPDL 204
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 167045379 184 YEALAYLAQGDLRRAINSL-QMAAAADKDITSEVVYQAVSAAR 225
Cdd:COG2842 205 LELLHRITRGNLRRLDRTLrLAARAAKRNGLTKITLDHVRAAA 247
|
|
| T7SS_EccA |
TIGR03922 |
type VII secretion AAA-ATPase EccA; This model represents the AAA family ATPase, EccA, of the ... |
38-62 |
4.71e-03 |
|
type VII secretion AAA-ATPase EccA; This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 188437 [Multi-domain] Cd Length: 557 Bit Score: 38.67 E-value: 4.71e-03
|
| RecA-like_PAN_like |
cd19502 |
proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily ... |
40-124 |
7.36e-03 |
|
proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily contains ATPase subunits of the eukaryotic 26S proteasome, and of the archaeal proteasome which carry out ATP-dependent degradation of substrates of the ubiquitin-proteasome pathway. The eukaryotic 26S proteasome consists of a proteolytic 20S core particle (CP), and a 19S regulatory particle (RP) which provides the ATP-dependence and the specificity for ubiquitinated proteins. In the archaea the RP is a homohexameric complex of proteasome-activating nucleotidase (PAN). This subfamily also includes various eukaryotic 26S subunits including, proteasome 26S subunit, ATPase 2 (PSMC2, also known as S7 and MSS1) which is a member of the 19S RP and has a chaperone like activity; and proteasome 20S subunit alpha 6 (PSMA6, also known as IOTA, p27K, and PROS27) which is a member of the 20S CP. This RecA-like_PAN subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410910 [Multi-domain] Cd Length: 171 Bit Score: 36.55 E-value: 7.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 40 LFAGPPGTGKTTCSLALAremfgehwqhnlHELNASDER--GIDVVRGKIKEFAR-----------TAPiggggfKIIFL 106
Cdd:cd19502 41 LLYGPPGTGKTLLAKAVA------------NHTDATFIRvvGSELVQKYIGEGARlvrelfemareKAP------SIIFI 102
|
90 100
....*....|....*....|....*
gi 167045379 107 DEADAL-------TSAAQAALRRTM 124
Cdd:cd19502 103 DEIDAIgakrfdsGTGGDREVQRTM 127
|
|
| TIP49 |
COG1224 |
DNA helicase TIP49, TBP-interacting protein [Transcription]; |
40-63 |
7.67e-03 |
|
DNA helicase TIP49, TBP-interacting protein [Transcription];
Pssm-ID: 440837 [Multi-domain] Cd Length: 452 Bit Score: 37.64 E-value: 7.67e-03
10 20
....*....|....*....|....
gi 167045379 40 LFAGPPGTGKTTCSLALAREMfGE 63
Cdd:COG1224 68 LIVGPPGTGKTALAVAIAREL-GE 90
|
|
| RPT1 |
COG1222 |
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ... |
39-112 |
8.18e-03 |
|
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440835 [Multi-domain] Cd Length: 326 Bit Score: 37.68 E-value: 8.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167045379 39 LLFAGPPGTGKTTCSLALAremfgehwqhnlHELNAS--DERGIDVVR----------GKIKEFART-APIggggfkIIF 105
Cdd:COG1222 115 VLLYGPPGTGKTLLAKAVA------------GELGAPfiRVRGSELVSkyigegarnvREVFELAREkAPS------IIF 176
|
....*..
gi 167045379 106 LDEADAL 112
Cdd:COG1222 177 IDEIDAI 183
|
|
| |
