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Conserved domains on  [gi|169648978|gb|ACA62561|]
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NADH dehydrogenase subunit 5, partial (mitochondrion) [Drosophila soonae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND5 super family cl33362
NADH dehydrogenase subunit 5; Provisional
 1-232 1.56e-54

NADH dehydrogenase subunit 5; Provisional


The actual alignment was detected with superfamily member MTH00165:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 183.80  E-value: 1.56e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648978   1 HMPLTSACFNVSNLALCGMPFLAGFYSKDMILEVVMISNVNLFMFFLFFFSTGLTVCYSFRLVFYSMTGDLNCGSLNMLN 80
Cdd:MTH00165 334 FMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSGDFNLKSLNNLS 413

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648978  81 DEGWIMLRGMMGLLIMSIIGGSMLNWLIFPTPYMICLPLYMKLLTLFVCIFGGLFGY*********************** 160
Cdd:MTH00165 414 DESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGY-ELSLMSLSYNLKSLKNYKLSSF 492

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 169648978 161 ************************************YFGGQHLYQKLVNYSQTLFLIHNNNLKIYLLLFVFW 232
Cdd:MTH00165 493 LGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWLQNNNLKIYLLSFLLW 564
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-232 1.56e-54

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 183.80  E-value: 1.56e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648978   1 HMPLTSACFNVSNLALCGMPFLAGFYSKDMILEVVMISNVNLFMFFLFFFSTGLTVCYSFRLVFYSMTGDLNCGSLNMLN 80
Cdd:MTH00165 334 FMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSGDFNLKSLNNLS 413

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648978  81 DEGWIMLRGMMGLLIMSIIGGSMLNWLIFPTPYMICLPLYMKLLTLFVCIFGGLFGY*********************** 160
Cdd:MTH00165 414 DESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGY-ELSLMSLSYNLKSLKNYKLSSF 492

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 169648978 161 ************************************YFGGQHLYQKLVNYSQTLFLIHNNNLKIYLLLFVFW 232
Cdd:MTH00165 493 LGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWLQNNNLKIYLLSFLLW 564
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 58-232 1.83e-28

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 106.10  E-value: 1.83e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648978   58 YSFRLVFYSMTGDLNCGSLNMLNDEGWIMLRGMMGLLIMSIIGGSMLNWLIFPTPYMICLPLYMKLLTLFVCIFGGLFGY 137
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648978  138 ***********************************************************YFGGQHLYQKLVNYSQTLFLI 217
Cdd:pfam06455  81 --ELSNLSNKQLKKSLNFNLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQIDQGWSEKFGPQGIAKTLMTLSKIIQNS 158

                         170
                  ....*....|....*
gi 169648978  218 HNNNLKIYLLLFVFW 232
Cdd:pfam06455 159 QKGLIKIYLLSFLLW 173
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-137 4.34e-12

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 65.17  E-value: 4.34e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648978   1 HMPLTSACFNVSNLALCGMPFLAGFYSKDMILEVVMIS-NVNLFMFFLFFFSTGLTVCYSFRLVFYSMTGDLNCGSLNML 79
Cdd:COG1009  365 KMPITAITFLIGALSLAGIPPFAGFFSKEAILEAALEAgGLGPLLLAVALLGAFLTAFYSFRLFFLVFFGKPRPKTPKHP 444

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 169648978  80 NDEGWIMLRGMMGLLIMSIIGGSMLNWL---------IFPTPYMICLPLYMKLLTLFVCIFGGLFGY 137
Cdd:COG1009  445 HESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLLLSLLGIALGY 511
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
 1-232 1.56e-54

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 183.80  E-value: 1.56e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648978   1 HMPLTSACFNVSNLALCGMPFLAGFYSKDMILEVVMISNVNLFMFFLFFFSTGLTVCYSFRLVFYSMTGDLNCGSLNMLN 80
Cdd:MTH00165 334 FMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSGDFNLKSLNNLS 413

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648978  81 DEGWIMLRGMMGLLIMSIIGGSMLNWLIFPTPYMICLPLYMKLLTLFVCIFGGLFGY*********************** 160
Cdd:MTH00165 414 DESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGY-ELSLMSLSYNLKSLKNYKLSSF 492

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 169648978 161 ************************************YFGGQHLYQKLVNYSQTLFLIHNNNLKIYLLLFVFW 232
Cdd:MTH00165 493 LGSMWFMPFLSTYGISYYPLNLGSLSLKSFDQGWSEYFGGQGLYNFLKKLSKLIQWLQNNNLKIYLLSFLLW 564
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-137 6.29e-29

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 113.97  E-value: 6.29e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648978   1 HMPLTSACFNVSNLALCGMPFLAGFYSKDMILEVVMISNVNLFMFFLFFFSTGLTVCYSFRLVFYSMTGDLNCGSLNMLN 80
Cdd:MTH00209 330 QMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSLTAAYSMRLSYFSLWGPNSSKSLNSSF 409

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 169648978  81 DEGWIMLRGMMGLLIMSIIGGSMLNWLIFPTPYMICLPLYMKLLTLFVCIFGGLFGY 137
Cdd:MTH00209 410 DQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNSVVLPWFLKLLPIMLILFGVLLMY 466
NADH5_C pfam06455
NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of ...
 58-232 1.83e-28

NADH dehydrogenase subunit 5 C-terminus; This family represents the C-terminal region of several NADH dehydrogenase subunit 5 proteins and is found in conjunction with pfam00361 and pfam00662.


Pssm-ID: 368917 [Multi-domain]  Cd Length: 181  Bit Score: 106.10  E-value: 1.83e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648978   58 YSFRLVFYSMTGDLNCGSLNMLNDEGWIMLRGMMGLLIMSIIGGSMLNWLIFPTPYMICLPLYMKLLTLFVCIFGGLFGY 137
Cdd:pfam06455   1 YSFRLIYYVMTGSPRFSSLSPINENNPIMINPIKRLAIGSIIGGSLLSWLIFPKPPMMTMPLYLKLLALLVTILGLLLGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648978  138 ***********************************************************YFGGQHLYQKLVNYSQTLFLI 217
Cdd:pfam06455  81 --ELSNLSNKQLKKSLNFNLHSFSGSMWFFPNLSHRLIPKLSLKLGQKLAKQIDQGWSEKFGPQGIAKTLMTLSKIIQNS 158

                         170
                  ....*....|....*
gi 169648978  218 HNNNLKIYLLLFVFW 232
Cdd:pfam06455 159 QKGLIKIYLLSFLLW 173
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
 2-136 5.58e-26

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 105.70  E-value: 5.58e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648978   2 MPLTSACFNVSNLALCGMPFLAGFYSKDMILEVVMISNVNLFMFFLFFFSTGLTVCYSFRLVFYSMTGDLNCGSLNMLND 81
Cdd:MTH00151 332 LPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGLTALYSARLSFCLVWGSMKSSSLSSKSD 411

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 169648978  82 EGWIMLRGMMGLLIMSIIGGSMLNWLIFPTPYMICLPLYMKLLTLFVCIFGGLFG 136
Cdd:MTH00151 412 EDFYVSLPMLLLSLGALIGGKLLQSLFEGFSEEFFLPSYLKLLIGFVILLGLFLS 466
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 2-137 4.02e-25

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 103.31  E-value: 4.02e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648978   2 MPLTSACFNVSNLALCGMPFLAGFYSKDMILEVVMISNVNLFMFFLFFFSTGLTVCYSFRLVFYSMTGDLNCGSLNMLND 81
Cdd:MTH00207 335 MPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATALTAAYSTRFTLAVLWSPNSSSPYHHLED 414

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 169648978  82 EGWIMLRGMMGLLIMSIIGGSMLNWLIFPTPYMICLPLYMKLLTLFVCIFGGLFGY 137
Cdd:MTH00207 415 EDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYKLLPLLVVTLGALLAW 470
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 2-136 1.74e-21

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 92.71  E-value: 1.74e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648978   2 MPLTSACFNVSNLALCGMPFLAGFYSKDMILEVVMISNVNLFMFFLFFFSTGLTVCYSFRLVFYSMTGDLNCGSLNMLND 81
Cdd:MTH00211 360 LPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSLTAAYSFRLIFLSLGGYPRFLSLSPINE 439

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 169648978  82 EGWIMLRGMMGLLIMSIIGGSMLNWLIFPTPYMI-CLPLYMKLLTLFVCIFGGLFG 136
Cdd:MTH00211 440 NYKLLKNPLKRLALGSILAGFIITSNLPPEKPEIlSLPFLLKLMPLLVTIVGLLLG 495
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
 2-132 1.50e-20

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 89.84  E-value: 1.50e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648978   2 MPLTSACFNVSNLALCGMPFLAGFYSKDMILEVVMISNVNLFMFFLFFFSTGLTVCYSFRLVFYSMTGDLNCGSLNMLND 81
Cdd:MTH00004 365 LPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWALLLTLLATSFTAAYSLRMILLVQTGFPRTPPTTPINE 444

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 169648978  82 EGWIMLRGMMGLLIMSIIGGSMLNWLIFPT-PYMICLPLYMKLLTLFVCIFG 132
Cdd:MTH00004 445 NTPTIINPITRLALGSILAGLLISSTILPTkTPPMTMPTTTKLAALIVTILG 496
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
 3-137 5.47e-20

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 88.49  E-value: 5.47e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648978   3 PLTSACFNVSNLALCGMPFLAGFYSKDMILEVVMISNVNLFMFFLFFFSTGLTVCYSFRLVFYSMTGDLNCGSLNMLNDE 82
Cdd:MTH00208 393 PVTSSCIILGSLALMGTPFLAGFYSKDLILEAGLASISNLLSIILALIATLLTAVYSFRIIFFCFLNNPSFSPLSPISEE 472

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 169648978  83 GWIMLRGMMGLLIMSIIGGSMLNWLIFPTPyMICLPLYMKLLTLFVCIFGGLFGY 137
Cdd:MTH00208 473 NPNLTNPLLRLAIGTIISGWFFSNFVFNLP-PLTLPLILKSLPLIVTIIGAAFSF 526
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 2-132 2.84e-19

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 86.12  E-value: 2.84e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648978   2 MPLTSACFNVSNLALCGMPFLAGFYSKDMILEVVMISNVNLFMFFLFFFSTGLTVCYSFRLVFYSMTGDLNCGSLNMLND 81
Cdd:MTH00066 363 LPITTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSFTAVYSFRIIYFSSMKFPRSLPLSPINE 442

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 169648978  82 EGWIMLRGMMGLLIMSIIGGSMLNWLIFPTPYMI-CLPLYMKLLTLFVCIFG 132
Cdd:MTH00066 443 NNPLIINPIKRLAWGSIIAGLLIIFNILPMKPQIlTMPTFMKLAALLVTLLG 494
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
 2-132 2.13e-18

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 83.75  E-value: 2.13e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648978   2 MPLTSACFNVSNLALCGMPFLAGFYSKDMILEVVMISNVNLFMFFLFFFSTGLTVCYSFRLVFYSMTGDLNCGSLNMLND 81
Cdd:MTH00108 366 LPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSLTAAYSTRIIFFALLGQPRFPPLITINE 445

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 169648978  82 EGWIMLRGMMGLLIMSIIGGSMLNWLIFPT--PYMIcLPLYMKLLTLFVCIFG 132
Cdd:MTH00108 446 NNPLLINPIKRLLLGSIFAGFLISNNIPPTtiPQMT-MPLYLKLTALAVTILG 497
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
 2-132 2.63e-14

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 71.79  E-value: 2.63e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648978   2 MPLTSACFNVSNLALCGMPFLAGFYSKDMILEVVMISNVNLFMFFLFFFSTGLTVCYSFRLVFYSMTGDLNCGSLNMLND 81
Cdd:MTH00137 371 TPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIATSFTAVYSLRVVFFVSMGHPRFNPLSPINE 450

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 169648978  82 EGWIMLRGMMGLLIMSIIGGSML--NWLIFPTPYMiCLPLYMKLLTLFVCIFG 132
Cdd:MTH00137 451 NNPAVINPIKRLAWGSIIAGLLItsNILPLKTPVM-TMPPLLKLAALIVTILG 502
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 1-137 1.47e-12

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 66.34  E-value: 1.47e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648978   1 HMPLTSACFNVSNLALCGMPFLAGFYSKDMILEVVMISNvNLFMFFLFFFSTGLTVCYSFRLVFYSMTGDlncgslNMLN 80
Cdd:PRK06590 372 KMPVTYATFLIGTLALIGIPPFAGFFSKDEILEAAFANG-HINLFVAGLVGAFLTAFYSFRLIFLVFHGK------EKEK 444

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 169648978  81 DE-----GWIMLRGMMGLLIMSIIGG-----SMLNWLIFPTPY-----MICLPLYMKLLTLFVCIFGGLFGY 137
Cdd:PRK06590 445 IHhphesPAVMTLPLIVLAVLSVFAGalivpPFLGVLPLTTELahgeaEHHLPVWVALLPLVVALAGIALAW 516
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 1-137 4.34e-12

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 65.17  E-value: 4.34e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648978   1 HMPLTSACFNVSNLALCGMPFLAGFYSKDMILEVVMIS-NVNLFMFFLFFFSTGLTVCYSFRLVFYSMTGDLNCGSLNML 79
Cdd:COG1009  365 KMPITAITFLIGALSLAGIPPFAGFFSKEAILEAALEAgGLGPLLLAVALLGAFLTAFYSFRLFFLVFFGKPRPKTPKHP 444

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 169648978  80 NDEGWIMLRGMMGLLIMSIIGGSMLNWL---------IFPTPYMICLPLYMKLLTLFVCIFGGLFGY 137
Cdd:COG1009  445 HESPWLMTLPLVVLAVLSLVLGLLLPGLlegllapaaVLGGELHLAHGLLLNALPLLLSLLGIALGY 511
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 2-132 7.97e-09

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 55.47  E-value: 7.97e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648978   2 MPLTSACFNVSNLALCGMPFLAGFYSKDMILEVVMISNVNLFMFFLFFFSTGLTVCYSFRLVFYSMTGDLNC--GSLNML 79
Cdd:MTH00020 366 LPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALLTAFYSIRLIYLTFLSNTNLkkAVFFHL 445

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 169648978  80 NDEGWIMLRGMMGLLIMSIIGGSMLNWLIFP---TPYMIcLPLYMKLLTLFVCIFG 132
Cdd:MTH00020 446 HEGDWNLLLPLGILALGSIFVGYLAKEMIWSfqiTLPPI-VPLSIKLLPVFLSLGG 500
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
2-70 5.49e-08

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 53.10  E-value: 5.49e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 169648978   2 MPLTSACFNVSNLALCGMPFLAGFYSKDMILEVVMISnvNLFMFFLFFFSTGLTVCYSFRLVFYSMTGD 70
Cdd:PRK07376 391 MPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEA--NPALWFVGFLTAGMTAFYMFRMYFLTFEGE 457
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
 2-137 1.16e-06

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 48.85  E-value: 1.16e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 169648978   2 MPLTSACFNVSNLALCGMPFLAGFYSKDMILEVVMISNVNLFMFFLFFFSTGLTVCYSFRLVFYSMTGDLNCGSLNMLN- 80
Cdd:MTH00210 367 IPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYDKYYIAFAYWLGSFSALLTAFYSIRLIYLTFITNTNSKKEVFIGv 446

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 169648978  81 -DEGWIMLRGMMGLLIMSIIGGSMLNWLIFPTPYMICLPLYMKLLTLFVCIFGGLFGY 137
Cdd:MTH00210 447 hESSWNITFPLLLLAFGSIFVGYLGKEVVLSNVIPPIVPNSIKMIPLLFSLLGALLAF 504
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-36 2.90e-04

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 41.14  E-value: 2.90e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 169648978    1 HMPLTSACFNVSNLALCGMPFLAGFYSKDMILEVVM 36
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAV 276
ndhF CHL00025
NADH dehydrogenase subunit 5
 1-77 3.35e-03

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 38.33  E-value: 3.35e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 169648978   1 HMPLTSACFNVSNLALCGMPFLAGFYSKDMILEVVMISnvNLFMFFLFFFSTGLTVCYSFRLVFYSMTGDLNCGSLN 77
Cdd:CHL00025 390 YMPITKTTFLLGTLSLCGIPPLACFWSKDEILNDSWLY--SPIFAIIAWSTAGLTAFYMFRIYLLTFEGHLRVHFQN 464
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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