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Conserved domains on  [gi|187371409|gb|ACD02581|]
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cytochrome b, partial (mitochondrion) [Turdus poliocephalus hygroscopus]

Protein Classification

cytochrome b( domain architecture ID 11475906)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-346 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 703.20  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409   1 GSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLNKETW 80
Cdd:MTH00119  35 GSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409  81 NIGVVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVBNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00119 115 NTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLT 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 161 LVHLTFLHETGSNNPLGIPADCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNALGDPENFTPANPLATPPHIKPEWY 240
Cdd:MTH00119 195 LIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWY 274

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLHKSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00119 275 FLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQL 354

                        330       340
                 ....*....|....*....|....*.
gi 187371409 321 ASISYFTIILVLFPLAAVLENKMLKL 346
Cdd:MTH00119 355 ASILYFTILLILFPLLGALENKMLNY 380
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-346 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 703.20  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409   1 GSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLNKETW 80
Cdd:MTH00119  35 GSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409  81 NIGVVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVBNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00119 115 NTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLT 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 161 LVHLTFLHETGSNNPLGIPADCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNALGDPENFTPANPLATPPHIKPEWY 240
Cdd:MTH00119 195 LIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWY 274

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLHKSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00119 275 FLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQL 354

                        330       340
                 ....*....|....*....|....*.
gi 187371409 321 ASISYFTIILVLFPLAAVLENKMLKL 346
Cdd:MTH00119 355 ASILYFTILLILFPLLGALENKMLNY 380
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-340 1.41e-129

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 375.67  E-value: 1.41e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409   1 GSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSY-----L 75
Cdd:COG1290   43 GELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreL 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409  76 NketWNIGVVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVBNPTLTRFFALH-FLLPF 154
Cdd:COG1290  123 N---WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPA 199

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 155 VIAGLTLVHLTFLHETGSNNPLGI----PADCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNalGDPENFTPANPLA 230
Cdd:COG1290  200 LLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLA 277

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 231 TPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAASVLVLFLTPLLHKSKQRSMTFRPLSQILFWALVANLLILTWVGSQ 308
Cdd:COG1290  278 TPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGAN 357

                        330       340       350
                 ....*....|....*....|....*....|..
gi 187371409 309 PVehPFIIIGQLASISYFTIILVLFPLAAVLE 340
Cdd:COG1290  358 PP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-173 1.39e-83

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 251.90  E-value: 1.39e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409   1 GSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLN--KE 78
Cdd:cd00284   26 GSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKprEL 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409  79 TWNIGVVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVBNPTLTRFFALHFLLPFVIAG 158
Cdd:cd00284  106 TWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAV 185

                        170
                 ....*....|....*
gi 187371409 159 LTLVHLTFLHETGSN 173
Cdd:cd00284  186 IVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-171 1.20e-73

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 226.11  E-value: 1.20e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409    1 GSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYG--SYLNKE 78
Cdd:pfam00033  17 GSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPREL 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409   79 TWNIGVVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVBNPTLTRFFALHFLLPFVIAG 158
Cdd:pfam00033  97 TWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAI 176

                         170
                  ....*....|...
gi 187371409  159 LTLVHLTFLHETG 171
Cdd:pfam00033 177 LMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 203-292 1.11e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 62.12  E-value: 1.11e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409  203 LILLVSLALFSPNALGDPenftpANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLHKSKQRSM 282
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQN 122

                          90
                  ....*....|.
gi 187371409  283 TF-RPLSQILF 292
Cdd:TIGR01156 123 PFrRPVATTVF 133
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-346 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 703.20  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409   1 GSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLNKETW 80
Cdd:MTH00119  35 GSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409  81 NIGVVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVBNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00119 115 NTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLT 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 161 LVHLTFLHETGSNNPLGIPADCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNALGDPENFTPANPLATPPHIKPEWY 240
Cdd:MTH00119 195 LIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWY 274

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLHKSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00119 275 FLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQL 354

                        330       340
                 ....*....|....*....|....*.
gi 187371409 321 ASISYFTIILVLFPLAAVLENKMLKL 346
Cdd:MTH00119 355 ASILYFTILLILFPLLGALENKMLNY 380
CYTB MTH00100
cytochrome b; Provisional
 1-345 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 645.93  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409   1 GSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLNKETW 80
Cdd:MTH00100  34 GSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETW 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409  81 NIGVVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVBNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00100 114 NIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALA 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 161 LVHLTFLHETGSNNPLGIPADCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNALGDPENFTPANPLATPPHIKPEWY 240
Cdd:MTH00100 194 MVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWY 273

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLHKSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00100 274 FLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQL 353

                        330       340
                 ....*....|....*....|....*
gi 187371409 321 ASISYFTIILVLFPLAAVLENKMLK 345
Cdd:MTH00100 354 ASILYFLIILILMPIASLIENNLLK 378
CYTB MTH00131
cytochrome b; Provisional
 1-345 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 642.86  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409   1 GSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLNKETW 80
Cdd:MTH00131  34 GSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETW 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409  81 NIGVVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVBNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00131 114 NIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAAT 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 161 LVHLTFLHETGSNNPLGIPADCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNALGDPENFTPANPLATPPHIKPEWY 240
Cdd:MTH00131 194 ILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWY 273

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLHKSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00131 274 FLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQV 353

                        330       340
                 ....*....|....*....|....*
gi 187371409 321 ASISYFTIILVLFPLAAVLENKMLK 345
Cdd:MTH00131 354 ASVLYFSLFLVLMPLAGWLENKALE 378
CYTB MTH00074
cytochrome b; Provisional
 1-346 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 617.85  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409   1 GSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLNKETW 80
Cdd:MTH00074  35 GSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409  81 NIGVVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVBNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00074 115 NIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGAS 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 161 LVHLTFLHETGSNNPLGIPADCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNALGDPENFTPANPLATPPHIKPEWY 240
Cdd:MTH00074 195 IIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWY 274

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLHKSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00074 275 FLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQA 354

                        330       340
                 ....*....|....*....|....*.
gi 187371409 321 ASISYFTIILVLFPLAAVLENKMLKL 346
Cdd:MTH00074 355 ASILYFLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00191
cytochrome b; Provisional
 1-335 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 595.74  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409   1 GSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLNKETW 80
Cdd:MTH00191  31 GSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETW 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409  81 NIGVVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVBNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00191 111 NVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALS 190

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 161 LVHLTFLHETGSNNPLGIPADCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNALGDPENFTPANPLATPPHIKPEWY 240
Cdd:MTH00191 191 LIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWY 270

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLHKSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00191 271 FLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQI 350

                        330
                 ....*....|....*
gi 187371409 321 ASISYFTIILVLFPL 335
Cdd:MTH00191 351 SSFLYFFLFLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 1-333 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 579.43  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409   1 GSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLNKETW 80
Cdd:MTH00156  24 GSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTW 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409  81 NIGVVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVBNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00156 104 MSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMV 183

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 161 LVHLTFLHETGSNNPLGIPADCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNALGDPENFTPANPLATPPHIKPEWY 240
Cdd:MTH00156 184 MIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWY 263

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLHKSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00156 264 FLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQI 343

                        330
                 ....*....|...
gi 187371409 321 ASISYFTIILVLF 333
Cdd:MTH00156 344 LTILYFLYFIINP 356
CYTB MTH00034
cytochrome b; Validated
 1-344 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 570.88  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409   1 GSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLNKETW 80
Cdd:MTH00034  34 GSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETW 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409  81 NIGVVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVBNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00034 114 NIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALS 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 161 LVHLTFLHETGSNNPLGIPADCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNALGDPENFTPANPLATPPHIKPEWY 240
Cdd:MTH00034 194 IIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWY 273

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLHKSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00034 274 FLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQV 353

                        330       340
                 ....*....|....*....|....
gi 187371409 321 ASISYFTIILVLFPLAAVLENKML 344
Cdd:MTH00034 354 ASVLYFSLFLFFFPLISYLENKLI 377
CYTB MTH00145
cytochrome b; Provisional
 1-344 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 567.61  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409   1 GSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLNKETW 80
Cdd:MTH00145  35 GSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409  81 NIGVVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVBNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00145 115 NIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLS 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 161 LVHLTFLHETGSNNPLGIPADCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNALGDPENFTPANPLATPPHIKPEWY 240
Cdd:MTH00145 195 VLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWY 274

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLHKSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00145 275 FLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQV 354

                        330       340
                 ....*....|....*....|....
gi 187371409 321 ASISYFTIILVLfPLAAVLENKML 344
Cdd:MTH00145 355 FTVLYFLFFLIL-PLVQKLWDNIL 377
CYTB MTH00016
cytochrome b; Validated
 1-345 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 534.26  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409   1 GSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLNKETW 80
Cdd:MTH00016  35 GSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409  81 NIGVVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVBNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00016 115 NIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALS 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 161 LVHLTFLHETGSNNPLGIPADCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNALGDPENFTPANPLATPPHIKPEWY 240
Cdd:MTH00016 195 MIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWY 274

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLHKSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00016 275 FLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQI 354

                        330       340
                 ....*....|....*....|....*
gi 187371409 321 ASISYFTiILVLFPLAAVLENKMLK 345
Cdd:MTH00016 355 FTVFYFF-YFMINPLLMKLWDKLLK 378
CYTB MTH00053
cytochrome b; Provisional
 1-346 2.02e-174

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 489.22  E-value: 2.02e-174
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409   1 GSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLNKETW 80
Cdd:MTH00053  35 GSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409  81 NIGVVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVBNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00053 115 NVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLA 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 161 LVHLTFLHETGSNNPLGIPADCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNALGDPENFTPANPLATPPHIKPEWY 240
Cdd:MTH00053 195 LVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWY 274

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLHKSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00053 275 FLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQI 354

                        330       340
                 ....*....|....*....|....*.
gi 187371409 321 ASISYFTIILVLFPLAAVLENKMLKL 346
Cdd:MTH00053 355 ASIFYFAYFLILMPLAGYLENKLLKL 380
CYTB MTH00022
cytochrome b; Validated
 1-345 8.92e-172

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 482.28  E-value: 8.92e-172
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409   1 GSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLNKETW 80
Cdd:MTH00022  33 GSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVW 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409  81 NIGVVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVBNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00022 113 NVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLV 192

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 161 LVHLTFLHETGSNNPLGIPADCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNALGDPENFTPANPLATPPHIKPEWY 240
Cdd:MTH00022 193 IVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWY 272

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLHKSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00022 273 FLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQL 352

                        330       340
                 ....*....|....*....|....*
gi 187371409 321 ASISYFTIILVLFPLAAVLENKMLK 345
Cdd:MTH00022 353 LSFFYFFYFLVLIPLLGELENQLLF 377
CYTB MTH00224
cytochrome b; Provisional
 1-345 1.58e-162

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 459.00  E-value: 1.58e-162
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409   1 GSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLNKETW 80
Cdd:MTH00224  35 GSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETW 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409  81 NIGVVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVBNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00224 115 NIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGAT 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 161 LVHLTFLHETGSNNPLGIPADCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNALGDPENFTPANPLATPPHIKPEWY 240
Cdd:MTH00224 195 ILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWY 274

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLHKSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00224 275 FLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQV 354

                        330       340
                 ....*....|....*....|....*
gi 187371409 321 ASISYFTiILVLFPLAAVLENKMLK 345
Cdd:MTH00224 355 FTILYFS-YFIISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 1-341 2.08e-130

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 377.74  E-value: 2.08e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409   1 GSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLNKETW 80
Cdd:MTH00033  31 GSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTW 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409  81 NIGVVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVBNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00033 111 IVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLV 190

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 161 LVHLTFLHETGSNNPLGIPADCDKIPFHPYYSTKDILGFALMLILLVSLALFS--PNALGDPENFTPANPLATPPHIKPE 238
Cdd:MTH00033 191 LAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVHIQPE 270

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 239 WYFLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLHKSKQRSMTFRPLSQILFWALVANLLILTWVGSQPV-EHPFIII 317
Cdd:MTH00033 271 WYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLI 350

                        330       340
                 ....*....|....*....|....
gi 187371409 318 GQLASISYFTIILVLFPLAAVLEN 341
Cdd:MTH00033 351 GRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-340 1.41e-129

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 375.67  E-value: 1.41e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409   1 GSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSY-----L 75
Cdd:COG1290   43 GELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAYkkpreL 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409  76 NketWNIGVVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVBNPTLTRFFALH-FLLPF 154
Cdd:COG1290  123 N---WIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPA 199

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 155 VIAGLTLVHLTFLHETGSNNPLGI----PADCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNalGDPENFTPANPLA 230
Cdd:COG1290  200 LLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLA 277

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 231 TPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAASVLVLFLTPLLHKSKQRSMTFRPLSQILFWALVANLLILTWVGSQ 308
Cdd:COG1290  278 TPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGAN 357

                        330       340       350
                 ....*....|....*....|....*....|..
gi 187371409 309 PVehPFIIIGQLASISYFTIILVLFPLAAVLE 340
Cdd:COG1290  358 PP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 1-333 3.13e-115

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 338.07  E-value: 3.13e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409   1 GSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLNKETW 80
Cdd:MTH00086  23 GSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVW 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409  81 NIGVVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVBNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00086 103 ISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLV 182

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 161 LVHLTFLHETGSNNPLGIPADCDKIPFHPYYSTKDILGFaLMLILLVSLALFSPNALGDPENFTPANPLATPPHIKPEWY 240
Cdd:MTH00086 183 LFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNI-IFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWY 261

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 241 FLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLHKSkqrSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQL 320
Cdd:MTH00086 262 FLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQI 338

                        330
                 ....*....|...
gi 187371409 321 ASISYFTIILVLF 333
Cdd:MTH00086 339 FSFIYFFLILLML 351
CYTB MTH00046
cytochrome b; Validated
 1-333 1.39e-88

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 269.93  E-value: 1.39e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409   1 GSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLNKETW 80
Cdd:MTH00046  25 GFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVW 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409  81 NIGVVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVBNPTLTRFFALHFLLPFVIAGLT 160
Cdd:MTH00046 105 NVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLM 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 161 LVHLTFLHETGSNNPLGIPAD-CDKIPFHPYYSTKDILGFALMLILLVSLALFSPNALGDPENFTPANPLATPPHIKPEW 239
Cdd:MTH00046 185 VVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEW 264

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 240 YFLFAYAILRSIPNKLGGvLALAASVLVLFLTPllhkSKQRSMTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQ 319
Cdd:MTH00046 265 YFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQ 339

                        330
                 ....*....|....
gi 187371409 320 LASISyftIILVLF 333
Cdd:MTH00046 340 LFSVL---MVLLLF 350
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-173 1.39e-83

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 251.90  E-value: 1.39e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409   1 GSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLN--KE 78
Cdd:cd00284   26 GSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYKKprEL 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409  79 TWNIGVVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVBNPTLTRFFALHFLLPFVIAG 158
Cdd:cd00284  106 TWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAV 185

                        170
                 ....*....|....*
gi 187371409 159 LTLVHLTFLHETGSN 173
Cdd:cd00284  186 IVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-171 1.20e-73

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 226.11  E-value: 1.20e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409    1 GSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYG--SYLNKE 78
Cdd:pfam00033  17 GSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPREL 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409   79 TWNIGVVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVBNPTLTRFFALHFLLPFVIAG 158
Cdd:pfam00033  97 TWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAI 176

                         170
                  ....*....|...
gi 187371409  159 LTLVHLTFLHETG 171
Cdd:pfam00033 177 LMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 174-321 3.26e-56

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 179.76  E-value: 3.26e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 174 NPLGIPADCDKIPFHPYYSTKDILGFALMLILLVSLALFSPNALGDPENFTPANPLATPPHIKPEWYFLFAYAILRSIPN 253
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 187371409 254 KLGGVLALAASVLVLFLTPLLHKSKQRSmTFRPLSQILFWALVANLLILTWVGSQPVEHPFIIIGQLA 321
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
225-325 1.20e-48

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 158.80  E-value: 1.20e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409  225 PANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLHKSKQRSMTFRPLSQILFWALVANLLILTW 304
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 187371409  305 VGSQPVEHPFIIIGQLASISY 325
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
55-220 2.12e-45

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 152.78  E-value: 2.12e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409   55 SLFFICIYLHIGRGFYYGSYLNKE--TWNIGVVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAW 132
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409  133 GGFSVBNPTLTRFFALHF-LLPFVIAGLTLVHLTFLHETGSNNPLGIPADCDKIPFHPYYSTKDILGFALMLILLVSLAL 211
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 187371409  212 FSPNALGDP 220
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 1-176 3.10e-36

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 130.60  E-value: 3.10e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409   1 GSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLNKE-- 78
Cdd:PRK03735  45 GGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRel 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409  79 TWNIGVVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVBNPTLTRFFALH-FLLPFVIA 157
Cdd:PRK03735 125 NWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALA 204

                        170
                 ....*....|....*....
gi 187371409 158 GLTLVHLTFLHETGSNNPL 176
Cdd:PRK03735 205 VLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 1-176 1.39e-31

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 118.28  E-value: 1.39e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409   1 GSLLGICLITQIITGLLLATHYTADTSLAFNSVAHMCRNVQFGWLIRNLHANGASLFFICIYLHIGRGFYYGSYLNKE-- 78
Cdd:CHL00070  37 GGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRel 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409  79 TWNIGVVLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVBNPTLTRFFALH-FLLPFVIA 157
Cdd:CHL00070 117 TWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTA 196

                        170
                 ....*....|....*....
gi 187371409 158 GLTLVHLTFLHETGSNNPL 176
Cdd:CHL00070 197 VFMLMHFLMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 196-292 3.02e-13

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 66.56  E-value: 3.02e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 196 ILGfalMLILLVSLALFSPNALGDPenftpANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLH 275
Cdd:CHL00058  44 ILG---TIACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLE 115

                         90
                 ....*....|....*...
gi 187371409 276 K-SKQRSMTFRPLSQILF 292
Cdd:CHL00058 116 NvNKFQNPFRRPVATTVF 133
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 205-306 4.96e-13

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 65.97  E-value: 4.96e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409 205 LLVSLALFSPNALGDPenftpANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLHKSKQRSMTF 284
Cdd:COG5679   51 LCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQNPF 125

                         90       100
                 ....*....|....*....|...
gi 187371409 285 -RPLSQILFwaLVANLLILtWVG 306
Cdd:COG5679  126 rRPVATAVF--LFGTLVTL-WLG 145
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 203-292 1.11e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 62.12  E-value: 1.11e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187371409  203 LILLVSLALFSPNALGDPenftpANPLATPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLVLFLTPLLHKSKQRSM 282
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQN 122

                          90
                  ....*....|.
gi 187371409  283 TF-RPLSQILF 292
Cdd:TIGR01156 123 PFrRPVATTVF 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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