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Conserved domains on  [gi|187764280|gb|ACD35992|]
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cytochrome b, partial (mitochondrion) [Pipistrellus stenopterus]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-134 5.45e-103

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 298.86  E-value: 5.45e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187764280   1 MTNMRKSHPLIKIINSSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWVLR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 187764280  81 YLHANGASMFFICLYLHVGRGLYYGSYLFKETWNMGVILLFAVMATAFMGYVLP 134
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLP 134
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-134 5.45e-103

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 298.86  E-value: 5.45e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187764280   1 MTNMRKSHPLIKIINSSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWVLR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 187764280  81 YLHANGASMFFICLYLHVGRGLYYGSYLFKETWNMGVILLFAVMATAFMGYVLP 134
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLP 134
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-134 1.89e-55

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 171.78  E-value: 1.89e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187764280   9 PLIKIINSSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWVLRYLHANGAS 88
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 187764280  89 MFFICLYLHVGRGLYYGSY--LFKETWNMGVILLFAVMATAFMGYVLP 134
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLP 128
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-134 1.65e-49

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 156.39  E-value: 1.65e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187764280   18 FIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWVLRYLHANGASMFFICLYLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 187764280   98 VGRGLYYG--SYLFKETWNMGVILLFAVMATAFMGYVLP 134
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLP 119
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
18-134 3.84e-44

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 148.40  E-value: 3.84e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187764280  18 FIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWVLRYLHANGASMFFICLYLH 97
Cdd:COG1290   27 HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLH 106

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 187764280  98 VGRGLYYGSYlfKE----TWNMGVILLFAVMATAFMGYVLP 134
Cdd:COG1290  107 MFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLP 145
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-134 5.45e-103

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 298.86  E-value: 5.45e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187764280   1 MTNMRKSHPLIKIINSSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWVLR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 187764280  81 YLHANGASMFFICLYLHVGRGLYYGSYLFKETWNMGVILLFAVMATAFMGYVLP 134
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLP 134
CYTB MTH00131
cytochrome b; Provisional
 1-134 4.47e-90

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 265.75  E-value: 4.47e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187764280   1 MTNMRKSHPLIKIINSSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWVLR 80
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 187764280  81 YLHANGASMFFICLYLHVGRGLYYGSYLFKETWNMGVILLFAVMATAFMGYVLP 134
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLP 134
CYTB MTH00119
cytochrome b; Provisional
 1-134 1.31e-89

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 264.84  E-value: 1.31e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187764280   1 MTNMRKSHPLIKIINSSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWVLR 80
Cdd:MTH00119   2 APNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIR 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 187764280  81 YLHANGASMFFICLYLHVGRGLYYGSYLFKETWNMGVILLFAVMATAFMGYVLP 134
Cdd:MTH00119  82 NLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLP 135
CYTB MTH00074
cytochrome b; Provisional
 1-134 2.17e-89

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 264.24  E-value: 2.17e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187764280   1 MTNMRKSHPLIKIINSSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWVLR 80
Cdd:MTH00074   2 AHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMR 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 187764280  81 YLHANGASMFFICLYLHVGRGLYYGSYLFKETWNMGVILLFAVMATAFMGYVLP 134
Cdd:MTH00074  82 NIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLP 135
CYTB MTH00191
cytochrome b; Provisional
 4-134 5.13e-86

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 254.84  E-value: 5.13e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187764280   4 MRKSHPLIKIINSSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWVLRYLH 83
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 187764280  84 ANGASMFFICLYLHVGRGLYYGSYLFKETWNMGVILLFAVMATAFMGYVLP 134
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLP 131
CYTB MTH00156
cytochrome b; Provisional
 11-134 7.74e-82

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 243.92  E-value: 7.74e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187764280  11 IKIINSSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWVLRYLHANGASMF 90
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 187764280  91 FICLYLHVGRGLYYGSYLFKETWNMGVILLFAVMATAFMGYVLP 134
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLP 124
CYTB MTH00034
cytochrome b; Validated
 4-134 1.30e-79

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 239.22  E-value: 1.30e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187764280   4 MRKSHPLIKIINSSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWVLRYLH 83
Cdd:MTH00034   4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 187764280  84 ANGASMFFICLYLHVGRGLYYGSYLFKETWNMGVILLFAVMATAFMGYVLP 134
Cdd:MTH00034  84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLP 134
CYTB MTH00145
cytochrome b; Provisional
 1-134 5.15e-79

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 237.50  E-value: 5.15e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187764280   1 MTNMRKSHPLIKIINSSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWVLR 80
Cdd:MTH00145   2 LSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLR 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 187764280  81 YLHANGASMFFICLYLHVGRGLYYGSYLFKETWNMGVILLFAVMATAFMGYVLP 134
Cdd:MTH00145  82 SLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLP 135
CYTB MTH00016
cytochrome b; Validated
 4-134 2.94e-77

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 233.03  E-value: 2.94e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187764280   4 MRKSHPLIKIINSSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWVLRYLH 83
Cdd:MTH00016   5 MRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLH 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 187764280  84 ANGASMFFICLYLHVGRGLYYGSYLFKETWNMGVILLFAVMATAFMGYVLP 134
Cdd:MTH00016  85 ANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLP 135
CYTB MTH00224
cytochrome b; Provisional
 4-134 1.24e-65

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 203.61  E-value: 1.24e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187764280   4 MRKSHPLIKIINSSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWVLRYLH 83
Cdd:MTH00224   5 FRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIH 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 187764280  84 ANGASMFFICLYLHVGRGLYYGSYLFKETWNMGVILLFAVMATAFMGYVLP 134
Cdd:MTH00224  85 ANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLP 135
CYTB MTH00022
cytochrome b; Validated
 4-134 3.87e-65

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 202.24  E-value: 3.87e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187764280   4 MRKSHPLIKIINSSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWVLRYLH 83
Cdd:MTH00022   3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 187764280  84 ANGASMFFICLYLHVGRGLYYGSYLFKETWNMGVILLFAVMATAFMGYVLP 134
Cdd:MTH00022  83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLP 133
CYTB MTH00053
cytochrome b; Provisional
 4-134 6.87e-62

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 193.77  E-value: 6.87e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187764280   4 MRKSHPLIKIINSSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWVLRYLH 83
Cdd:MTH00053   5 IRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLH 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 187764280  84 ANGASMFFICLYLHVGRGLYYGSYLFKETWNMGVILLFAVMATAFMGYVLP 134
Cdd:MTH00053  85 ANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLP 135
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-134 1.89e-55

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 171.78  E-value: 1.89e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187764280   9 PLIKIINSSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWVLRYLHANGAS 88
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 187764280  89 MFFICLYLHVGRGLYYGSY--LFKETWNMGVILLFAVMATAFMGYVLP 134
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLP 128
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-134 1.65e-49

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 156.39  E-value: 1.65e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187764280   18 FIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWVLRYLHANGASMFFICLYLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 187764280   98 VGRGLYYG--SYLFKETWNMGVILLFAVMATAFMGYVLP 134
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLP 119
CYTB MTH00033
cytochrome b; Provisional
 16-134 1.89e-48

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 159.33  E-value: 1.89e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187764280  16 SSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWVLRYLHANGASMFFICLY 95
Cdd:MTH00033  13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 187764280  96 LHVGRGLYYGSYLFKETWNMGVILLFAVMATAFMGYVLP 134
Cdd:MTH00033  93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLP 131
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
18-134 3.84e-44

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 148.40  E-value: 3.84e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187764280  18 FIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWVLRYLHANGASMFFICLYLH 97
Cdd:COG1290   27 HLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLH 106

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 187764280  98 VGRGLYYGSYlfKE----TWNMGVILLFAVMATAFMGYVLP 134
Cdd:COG1290  107 MFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLP 145
CYTB MTH00086
cytochrome b; Provisional
 12-134 8.32e-41

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 138.92  E-value: 8.32e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187764280  12 KIINSSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWVLRYLHANGASMFF 91
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 187764280  92 ICLYLHVGRGLYYGSYLFKETWNMGVILLFAVMATAFMGYVLP 134
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLV 123
CYTB MTH00046
cytochrome b; Validated
 10-134 2.62e-27

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 103.14  E-value: 2.62e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187764280  10 LIKIINSSFIDLPAPSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWVLRYLHANGASM 89
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 187764280  90 FFICLYLHVGRGLYYGSYLFKETWNMGVILLFAVMATAFMGYVLP 134
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILP 125
PRK03735 PRK03735
cytochrome b6; Provisional
 33-134 1.05e-19

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 80.91  E-value: 1.05e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187764280  33 FGSLLGICLALQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWVLRYLHANGASMFFICLYLHVGRGLYYGSYLFKE- 111
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100
                 ....*....|....*....|....
gi 187764280 112 -TWNMGVILLFAVMATAFMGYVLP 134
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLP 147
petB CHL00070
cytochrome b6
 24-134 2.16e-13

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 63.97  E-value: 2.16e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187764280  24 PSNISAWWNFGSLLGICLALQILTGLFLAMHYTSDTMTAFSSVTHICRDVNYGWVLRYLHANGASMFFICLYLHVGRGLY 103
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 187764280 104 YGSylFKE----TWNMGVILLFAVMATAFMGYVLP 134
Cdd:CHL00070 107 TGG--FKKprelTWVTGVVLAVLTVSFGVTGYSLP 139
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
88-134 1.94e-09

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 52.63  E-value: 1.94e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 187764280   88 SMFFICLYLHVGRGLYYGSYLFKE--TWNMGVILLFAVMATAFMGYVLP 134
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLP 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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