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Conserved domains on  [gi|189187908|gb|ACD84766|]
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capsid protein, partial [Norovirus Hu/P15-30/2001/SWE]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Calici_coat_C super family cl07164
Calicivirus coat protein C-terminal; This is the calicivirus coat protein (pfam00915) ...
 103-198 2.21e-34

Calicivirus coat protein C-terminal; This is the calicivirus coat protein (pfam00915) C-terminal region.


The actual alignment was detected with superfamily member pfam08435:

Pssm-ID: 429995  Cd Length: 224  Bit Score: 121.20  E-value: 2.21e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189187908  103 LDNLNGTPYDPAEDiPGPLGTPDFKGIVFGVASQRNSD-GTTRAHEAKVDTRTGRFTPKLGSLVIFTDS-EDFQENKPTR 180
Cdd:pfam08435   1 LTELDGSPFDPTED-PAPLGFPDFGGCDWGVESQRNTNnGATRAHEAVIATNSAKFTPKLGSVQFSTWStGDFLGNQPWR 79

                          90
                  ....*....|....*...
gi 189187908  181 FTPVGVGVDneEEFDQWS 198
Cdd:pfam08435  80 FTPVGIAGD--DWFPQWT 95
Calici_coat super family cl03015
Calicivirus coat protein;
1-60 1.56e-05

Calicivirus coat protein;


The actual alignment was detected with superfamily member pfam00915:

Pssm-ID: 459994  Cd Length: 291  Bit Score: 44.50  E-value: 1.56e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 189187908    1 LVPP--TVESKTKP-FTLPILTISEMSNsRFPVPIDSLHTSPNsnsVVQCQNGRVTLDGELMG 60
Cdd:pfam00915 220 LKPPgsTVEHGSRPsDTIPNLSLSWLGN-RWWSPISGFGISPQ---VFQFQNRHFDLDGRTVG 278
 
Name Accession Description Interval E-value
Calici_coat_C pfam08435
Calicivirus coat protein C-terminal; This is the calicivirus coat protein (pfam00915) ...
 103-198 2.21e-34

Calicivirus coat protein C-terminal; This is the calicivirus coat protein (pfam00915) C-terminal region.


Pssm-ID: 429995  Cd Length: 224  Bit Score: 121.20  E-value: 2.21e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189187908  103 LDNLNGTPYDPAEDiPGPLGTPDFKGIVFGVASQRNSD-GTTRAHEAKVDTRTGRFTPKLGSLVIFTDS-EDFQENKPTR 180
Cdd:pfam08435   1 LTELDGSPFDPTED-PAPLGFPDFGGCDWGVESQRNTNnGATRAHEAVIATNSAKFTPKLGSVQFSTWStGDFLGNQPWR 79

                          90
                  ....*....|....*...
gi 189187908  181 FTPVGVGVDneEEFDQWS 198
Cdd:pfam08435  80 FTPVGIAGD--DWFPQWT 95
Calici_coat pfam00915
Calicivirus coat protein;
1-60 1.56e-05

Calicivirus coat protein;


Pssm-ID: 459994  Cd Length: 291  Bit Score: 44.50  E-value: 1.56e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 189187908    1 LVPP--TVESKTKP-FTLPILTISEMSNsRFPVPIDSLHTSPNsnsVVQCQNGRVTLDGELMG 60
Cdd:pfam00915 220 LKPPgsTVEHGSRPsDTIPNLSLSWLGN-RWWSPISGFGISPQ---VFQFQNRHFDLDGRTVG 278
 
Name Accession Description Interval E-value
Calici_coat_C pfam08435
Calicivirus coat protein C-terminal; This is the calicivirus coat protein (pfam00915) ...
 103-198 2.21e-34

Calicivirus coat protein C-terminal; This is the calicivirus coat protein (pfam00915) C-terminal region.


Pssm-ID: 429995  Cd Length: 224  Bit Score: 121.20  E-value: 2.21e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 189187908  103 LDNLNGTPYDPAEDiPGPLGTPDFKGIVFGVASQRNSD-GTTRAHEAKVDTRTGRFTPKLGSLVIFTDS-EDFQENKPTR 180
Cdd:pfam08435   1 LTELDGSPFDPTED-PAPLGFPDFGGCDWGVESQRNTNnGATRAHEAVIATNSAKFTPKLGSVQFSTWStGDFLGNQPWR 79

                          90
                  ....*....|....*...
gi 189187908  181 FTPVGVGVDneEEFDQWS 198
Cdd:pfam08435  80 FTPVGIAGD--DWFPQWT 95
Calici_coat pfam00915
Calicivirus coat protein;
1-60 1.56e-05

Calicivirus coat protein;


Pssm-ID: 459994  Cd Length: 291  Bit Score: 44.50  E-value: 1.56e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 189187908    1 LVPP--TVESKTKP-FTLPILTISEMSNsRFPVPIDSLHTSPNsnsVVQCQNGRVTLDGELMG 60
Cdd:pfam00915 220 LKPPgsTVEHGSRPsDTIPNLSLSWLGN-RWWSPISGFGISPQ---VFQFQNRHFDLDGRTVG 278
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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