NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|194739527|gb|ACF94435|]
View 

cytochrome b, partial (mitochondrion) [Notropis stilbius]

Protein Classification

cytochrome b( domain architecture ID 1000003)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Symbol:  CYTB
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31802
cytochrome b; Provisional
 1-132 3.42e-105

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00131:

Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 304.27  E-value: 3.42e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194739527   1 HPLIKIANGALVDLPTPSNISALWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVTHICRDVNYGWLIRNMHANGA 80
Cdd:MTH00131   8 HPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGA 87

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 194739527  81 SFFFICIYMHIARGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMS 132
Cdd:MTH00131  88 SFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMS 139
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-132 3.42e-105

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 304.27  E-value: 3.42e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194739527   1 HPLIKIANGALVDLPTPSNISALWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVTHICRDVNYGWLIRNMHANGA 80
Cdd:MTH00131   8 HPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGA 87

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 194739527  81 SFFFICIYMHIARGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMS 132
Cdd:MTH00131  88 SFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMS 139
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 2-132 2.71e-58

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 179.10  E-value: 2.71e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194739527   2 PLIKIANGALVDLPTPSNISALWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVTHICRDVNYGWLIRNMHANGAS 81
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 194739527  82 FFFICIYMHIARGLYYGSY--LYKETWNIGVVLLLLVMMTAFVGYVLPWGQMS 132
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMS 133
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
11-132 1.01e-52

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 164.48  E-value: 1.01e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194739527   11 LVDLPTPSNISALWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVTHICRDVNYGWLIRNMHANGASFFFICIYMH 90
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 194739527   91 IARGLYYG--SYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMS 132
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMS 124
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
15-132 1.00e-49

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 162.65  E-value: 1.00e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194739527  15 PTPSNISALWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVTHICRDVNYGWLIRNMHANGASFFFICIYMHIARG 94
Cdd:COG1290   31 PFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRG 110

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 194739527  95 LYYGSylYKE----TWNIGVVLLLLVMMTAFVGYVLPWGQMS 132
Cdd:COG1290  111 FFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLS 150
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-132 3.42e-105

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 304.27  E-value: 3.42e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194739527   1 HPLIKIANGALVDLPTPSNISALWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVTHICRDVNYGWLIRNMHANGA 80
Cdd:MTH00131   8 HPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGA 87

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 194739527  81 SFFFICIYMHIARGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMS 132
Cdd:MTH00131  88 SFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMS 139
CYTB MTH00119
cytochrome b; Provisional
 1-132 1.40e-93

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 274.86  E-value: 1.40e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194739527   1 HPLIKIANGALVDLPTPSNISALWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVTHICRDVNYGWLIRNMHANGA 80
Cdd:MTH00119   9 HPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGA 88

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 194739527  81 SFFFICIYMHIARGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMS 132
Cdd:MTH00119  89 SMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMS 140
CYTB MTH00074
cytochrome b; Provisional
 1-132 3.15e-93

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 273.87  E-value: 3.15e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194739527   1 HPLIKIANGALVDLPTPSNISALWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVTHICRDVNYGWLIRNMHANGA 80
Cdd:MTH00074   9 HPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGA 88

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 194739527  81 SFFFICIYMHIARGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMS 132
Cdd:MTH00074  89 SFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMS 140
CYTB MTH00191
cytochrome b; Provisional
 1-132 5.16e-92

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 270.25  E-value: 5.16e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194739527   1 HPLIKIANGALVDLPTPSNISALWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVTHICRDVNYGWLIRNMHANGA 80
Cdd:MTH00191   5 HPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGA 84

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 194739527  81 SFFFICIYMHIARGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMS 132
Cdd:MTH00191  85 SFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMS 136
CYTB MTH00100
cytochrome b; Provisional
 1-132 1.87e-91

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 269.20  E-value: 1.87e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194739527   1 HPLIKIANGALVDLPTPSNISALWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVTHICRDVNYGWLIRNMHANGA 80
Cdd:MTH00100   8 HPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGA 87

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 194739527  81 SFFFICIYMHIARGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMS 132
Cdd:MTH00100  88 SMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMS 139
CYTB MTH00156
cytochrome b; Provisional
 4-132 5.91e-89

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 262.03  E-value: 5.91e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194739527   4 IKIANGALVDLPTPSNISALWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVTHICRDVNYGWLIRNMHANGASFF 83
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 194739527  84 FICIYMHIARGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMS 132
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMS 129
CYTB MTH00034
cytochrome b; Validated
 1-132 1.50e-84

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 251.55  E-value: 1.50e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194739527   1 HPLIKIANGALVDLPTPSNISALWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVTHICRDVNYGWLIRNMHANGA 80
Cdd:MTH00034   8 HPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGA 87

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 194739527  81 SFFFICIYMHIARGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMS 132
Cdd:MTH00034  88 SLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMS 139
CYTB MTH00145
cytochrome b; Provisional
 1-132 9.96e-84

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 249.44  E-value: 9.96e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194739527   1 HPLIKIANGALVDLPTPSNISALWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVTHICRDVNYGWLIRNMHANGA 80
Cdd:MTH00145   9 HPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGA 88

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 194739527  81 SFFFICIYMHIARGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMS 132
Cdd:MTH00145  89 SFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMS 140
CYTB MTH00016
cytochrome b; Validated
 1-132 1.16e-79

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 239.19  E-value: 1.16e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194739527   1 HPLIKIANGALVDLPTPSNISALWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVTHICRDVNYGWLIRNMHANGA 80
Cdd:MTH00016   9 HPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGA 88

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 194739527  81 SFFFICIYMHIARGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMS 132
Cdd:MTH00016  89 SFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMS 140
CYTB MTH00022
cytochrome b; Validated
 1-132 4.70e-68

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 209.56  E-value: 4.70e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194739527   1 HPLIKIANGALVDLPTPSNISALWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVTHICRDVNYGWLIRNMHANGA 80
Cdd:MTH00022   7 NPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGA 86

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 194739527  81 SFFFICIYMHIARGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMS 132
Cdd:MTH00022  87 SLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMS 138
CYTB MTH00224
cytochrome b; Provisional
 1-132 2.83e-67

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 207.47  E-value: 2.83e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194739527   1 HPLIKIANGALVDLPTPSNISALWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVTHICRDVNYGWLIRNMHANGA 80
Cdd:MTH00224   9 HPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGA 88

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 194739527  81 SFFFICIYMHIARGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMS 132
Cdd:MTH00224  89 SMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMS 140
CYTB MTH00053
cytochrome b; Provisional
 2-132 1.82e-63

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 198.01  E-value: 1.82e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194739527   2 PLIKIANGALVDLPTPSNISALWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVTHICRDVNYGWLIRNMHANGAS 81
Cdd:MTH00053  10 PVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGAS 89

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 194739527  82 FFFICIYMHIARGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMS 132
Cdd:MTH00053  90 MFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMS 140
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 2-132 2.71e-58

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 179.10  E-value: 2.71e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194739527   2 PLIKIANGALVDLPTPSNISALWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVTHICRDVNYGWLIRNMHANGAS 81
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 194739527  82 FFFICIYMHIARGLYYGSY--LYKETWNIGVVLLLLVMMTAFVGYVLPWGQMS 132
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMS 133
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
11-132 1.01e-52

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 164.48  E-value: 1.01e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194739527   11 LVDLPTPSNISALWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVTHICRDVNYGWLIRNMHANGASFFFICIYMH 90
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 194739527   91 IARGLYYG--SYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMS 132
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMS 124
CYTB MTH00033
cytochrome b; Provisional
 11-132 3.22e-50

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 163.96  E-value: 3.22e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194739527  11 LVDLPTPSNISALWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVTHICRDVNYGWLIRNMHANGASFFFICIYMH 90
Cdd:MTH00033  15 IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCH 94

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 194739527  91 IARGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMS 132
Cdd:MTH00033  95 IGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMS 136
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
15-132 1.00e-49

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 162.65  E-value: 1.00e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194739527  15 PTPSNISALWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVTHICRDVNYGWLIRNMHANGASFFFICIYMHIARG 94
Cdd:COG1290   31 PFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRG 110

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 194739527  95 LYYGSylYKE----TWNIGVVLLLLVMMTAFVGYVLPWGQMS 132
Cdd:COG1290  111 FFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLS 150
CYTB MTH00086
cytochrome b; Provisional
 8-132 2.05e-44

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 148.16  E-value: 2.05e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194739527   8 NGALVDLPTPSNISALWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVTHICRDVNYGWLIRNMHANGASFFFICI 87
Cdd:MTH00086   4 NSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFL 83

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 194739527  88 YMHIARGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMS 132
Cdd:MTH00086  84 YLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMS 128
CYTB MTH00046
cytochrome b; Validated
 3-132 6.28e-31

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 112.77  E-value: 6.28e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194739527   3 LIKIANGALVDLPTPSNISALWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVTHICRDVNYGWLIRNMHANGASF 82
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 194739527  83 FFICIYMHIARGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMS 132
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMS 130
PRK03735 PRK03735
cytochrome b6; Provisional
 26-130 2.09e-23

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 90.54  E-value: 2.09e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194739527  26 FGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVTHICRDVNYGWLIRNMHANGASFFFICIYMHIARGLYYGSYLYKE- 104
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100
                 ....*....|....*....|....*..
gi 194739527 105 -TWNIGVVLLLLVMMTAFVGYVLPWGQ 130
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQ 150
petB CHL00070
cytochrome b6
 17-131 1.68e-15

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 69.75  E-value: 1.68e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 194739527  17 PSNISALWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVTHICRDVNYGWLIRNMHANGASFFFICIYMHIARGLY 96
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 194739527  97 YGSYLYKE--TWNIGVVLLLLVMMTAFVGYVLPWGQM 131
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQI 143
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
81-132 1.89e-13

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 63.41  E-value: 1.89e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 194739527   81 SFFFICIYMHIARGLYYGSYLYKE--TWNIGVVLLLLVMMTAFVGYVLPWGQMS 132
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLS 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH