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Conserved domains on  [gi|203284944|gb|ACH97096|]
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cytochrome b, partial (mitochondrion) [Mugil liza]

Protein Classification

cytochrome b( domain architecture ID 1000003)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Symbol:  CYTB
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31802
cytochrome b; Provisional
 1-234 5.96e-174

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00131:

Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 483.00  E-value: 5.96e-174
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944   1 LLGLCLISQIATGLFLAMHYAPETSSAFASVAHICRDVNYGWLIRNMHANGASFFFVCIYIHIGRGLYYGSYLYKETWNI 80
Cdd:MTH00131  36 LLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNI 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944  81 GVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGESLVQWLWGGFAVDNATLTRFFAFHFLLPFVILALTVI 160
Cdd:MTH00131 116 GVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATIL 195

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 203284944 161 HLIFLHETGSNNPLGLPSNSDKIPFHPYYTTKDIFGFLVLLFALISLALFAPNLLGDPDNFTPANSMVTPAHIK 234
Cdd:MTH00131 196 HLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIK 269
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-234 5.96e-174

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 483.00  E-value: 5.96e-174
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944   1 LLGLCLISQIATGLFLAMHYAPETSSAFASVAHICRDVNYGWLIRNMHANGASFFFVCIYIHIGRGLYYGSYLYKETWNI 80
Cdd:MTH00131  36 LLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNI 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944  81 GVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGESLVQWLWGGFAVDNATLTRFFAFHFLLPFVILALTVI 160
Cdd:MTH00131 116 GVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATIL 195

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 203284944 161 HLIFLHETGSNNPLGLPSNSDKIPFHPYYTTKDIFGFLVLLFALISLALFAPNLLGDPDNFTPANSMVTPAHIK 234
Cdd:MTH00131 196 HLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIK 269
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-234 5.36e-99

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 293.23  E-value: 5.36e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944   1 LLGLCLISQIATGLFLAMHYAPETSSAFASVAHICRDVNYGWLIRNMHANGASFFFVCIYIHIGRGLYYGSYlyKE---- 76
Cdd:COG1290   45 LALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprel 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944  77 TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGESLVQWLWGGFAVDNATLTRFFAFH-FLLPFVIL 155
Cdd:COG1290  123 NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLL 202

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944 156 ALTVIHLIFLHETGSNNPLG----LPSNSDKIPFHPYYTTKDIFGFLVLLFALISLALFAPNllGDPDNFTPANSMVTPA 231
Cdd:COG1290  203 ALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPA 280


                 ...
gi 203284944 232 HIK 234
Cdd:COG1290  281 HIQ 283
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-171 2.78e-82

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 244.20  E-value: 2.78e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944   1 LLGLCLISQIATGLFLAMHYAPETSSAFASVAHICRDVNYGWLIRNMHANGASFFFVCIYIHIGRGLYYGSY--LYKETW 78
Cdd:cd00284   28 LLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTW 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944  79 NIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGESLVQWLWGGFAVDNATLTRFFAFHFLLPFVILALT 158
Cdd:cd00284  108 VIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIV 187

                        170
                 ....*....|...
gi 203284944 159 VIHLIFLHETGSN 171
Cdd:cd00284  188 ILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-169 1.38e-76

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 229.19  E-value: 1.38e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944    1 LLGLCLISQIATGLFLAMHYAPETSSAFASVAHICRDVNYGWLIRNMHANGASFFFVCIYIHIGRGLYYG--SYLYKETW 78
Cdd:pfam00033  19 LLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTW 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944   79 NIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGESLVQWLWGGFAVDNATLTRFFAFHFLLPFVILALT 158
Cdd:pfam00033  99 VIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILM 178

                         170
                  ....*....|.
gi 203284944  159 VIHLIFLHETG 169
Cdd:pfam00033 179 LLHLLFLHETG 189
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-234 5.96e-174

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 483.00  E-value: 5.96e-174
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944   1 LLGLCLISQIATGLFLAMHYAPETSSAFASVAHICRDVNYGWLIRNMHANGASFFFVCIYIHIGRGLYYGSYLYKETWNI 80
Cdd:MTH00131  36 LLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNI 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944  81 GVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGESLVQWLWGGFAVDNATLTRFFAFHFLLPFVILALTVI 160
Cdd:MTH00131 116 GVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATIL 195

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 203284944 161 HLIFLHETGSNNPLGLPSNSDKIPFHPYYTTKDIFGFLVLLFALISLALFAPNLLGDPDNFTPANSMVTPAHIK 234
Cdd:MTH00131 196 HLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIK 269
CYTB MTH00119
cytochrome b; Provisional
 1-234 4.89e-167

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 465.53  E-value: 4.89e-167
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944   1 LLGLCLISQIATGLFLAMHYAPETSSAFASVAHICRDVNYGWLIRNMHANGASFFFVCIYIHIGRGLYYGSYLYKETWNI 80
Cdd:MTH00119  37 LLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNT 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944  81 GVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGESLVQWLWGGFAVDNATLTRFFAFHFLLPFVILALTVI 160
Cdd:MTH00119 117 GVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLI 196

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 203284944 161 HLIFLHETGSNNPLGLPSNSDKIPFHPYYTTKDIFGFLVLLFALISLALFAPNLLGDPDNFTPANSMVTPAHIK 234
Cdd:MTH00119 197 HLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIK 270
CYTB MTH00100
cytochrome b; Provisional
 1-234 3.66e-162

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 453.33  E-value: 3.66e-162
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944   1 LLGLCLISQIATGLFLAMHYAPETSSAFASVAHICRDVNYGWLIRNMHANGASFFFVCIYIHIGRGLYYGSYLYKETWNI 80
Cdd:MTH00100  36 LLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNI 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944  81 GVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGESLVQWLWGGFAVDNATLTRFFAFHFLLPFVILALTVI 160
Cdd:MTH00100 116 GIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMV 195

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 203284944 161 HLIFLHETGSNNPLGLPSNSDKIPFHPYYTTKDIFGFLVLLFALISLALFAPNLLGDPDNFTPANSMVTPAHIK 234
Cdd:MTH00100 196 HLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIK 269
CYTB MTH00156
cytochrome b; Provisional
 1-234 1.42e-161

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 450.77  E-value: 1.42e-161
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944   1 LLGLCLISQIATGLFLAMHYAPETSSAFASVAHICRDVNYGWLIRNMHANGASFFFVCIYIHIGRGLYYGSYLYKETWNI 80
Cdd:MTH00156  26 LLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMS 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944  81 GVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGESLVQWLWGGFAVDNATLTRFFAFHFLLPFVILALTVI 160
Cdd:MTH00156 106 GVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMI 185

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 203284944 161 HLIFLHETGSNNPLGLPSNSDKIPFHPYYTTKDIFGFLVLLFALISLALFAPNLLGDPDNFTPANSMVTPAHIK 234
Cdd:MTH00156 186 HLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQ 259
CYTB MTH00074
cytochrome b; Provisional
 1-234 4.19e-161

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 450.67  E-value: 4.19e-161
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944   1 LLGLCLISQIATGLFLAMHYAPETSSAFASVAHICRDVNYGWLIRNMHANGASFFFVCIYIHIGRGLYYGSYLYKETWNI 80
Cdd:MTH00074  37 LLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNI 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944  81 GVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGESLVQWLWGGFAVDNATLTRFFAFHFLLPFVILALTVI 160
Cdd:MTH00074 117 GVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASII 196

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 203284944 161 HLIFLHETGSNNPLGLPSNSDKIPFHPYYTTKDIFGFLVLLFALISLALFAPNLLGDPDNFTPANSMVTPAHIK 234
Cdd:MTH00074 197 HLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQ 270
CYTB MTH00191
cytochrome b; Provisional
 1-234 5.51e-159

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 444.74  E-value: 5.51e-159
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944   1 LLGLCLISQIATGLFLAMHYAPETSSAFASVAHICRDVNYGWLIRNMHANGASFFFVCIYIHIGRGLYYGSYLYKETWNI 80
Cdd:MTH00191  33 LLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNV 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944  81 GVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGESLVQWLWGGFAVDNATLTRFFAFHFLLPFVILALTVI 160
Cdd:MTH00191 113 GVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLI 192

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 203284944 161 HLIFLHETGSNNPLGLPSNSDKIPFHPYYTTKDIFGFLVLLFALISLALFAPNLLGDPDNFTPANSMVTPAHIK 234
Cdd:MTH00191 193 HLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIK 266
CYTB MTH00145
cytochrome b; Provisional
 1-234 1.93e-151

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 425.86  E-value: 1.93e-151
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944   1 LLGLCLISQIATGLFLAMHYAPETSSAFASVAHICRDVNYGWLIRNMHANGASFFFVCIYIHIGRGLYYGSYLYKETWNI 80
Cdd:MTH00145  37 LLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNI 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944  81 GVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGESLVQWLWGGFAVDNATLTRFFAFHFLLPFVILALTVI 160
Cdd:MTH00145 117 GVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVL 196

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 203284944 161 HLIFLHETGSNNPLGLPSNSDKIPFHPYYTTKDIFGFLVLLFALISLALFAPNLLGDPDNFTPANSMVTPAHIK 234
Cdd:MTH00145 197 HLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQ 270
CYTB MTH00016
cytochrome b; Validated
 1-234 7.32e-146

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 411.76  E-value: 7.32e-146
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944   1 LLGLCLISQIATGLFLAMHYAPETSSAFASVAHICRDVNYGWLIRNMHANGASFFFVCIYIHIGRGLYYGSYLYKETWNI 80
Cdd:MTH00016  37 LLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNI 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944  81 GVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGESLVQWLWGGFAVDNATLTRFFAFHFLLPFVILALTVI 160
Cdd:MTH00016 117 GVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMI 196

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 203284944 161 HLIFLHETGSNNPLGLPSNSDKIPFHPYYTTKDIFGFLVLLFALISLALFAPNLLGDPDNFTPANSMVTPAHIK 234
Cdd:MTH00016 197 HLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIK 270
CYTB MTH00034
cytochrome b; Validated
 1-234 6.20e-145

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 409.48  E-value: 6.20e-145
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944   1 LLGLCLISQIATGLFLAMHYAPETSSAFASVAHICRDVNYGWLIRNMHANGASFFFVCIYIHIGRGLYYGSYLYKETWNI 80
Cdd:MTH00034  36 LLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNI 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944  81 GVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGESLVQWLWGGFAVDNATLTRFFAFHFLLPFVILALTVI 160
Cdd:MTH00034 116 GVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSII 195

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 203284944 161 HLIFLHETGSNNPLGLPSNSDKIPFHPYYTTKDIFGFLVLLFALISLALFAPNLLGDPDNFTPANSMVTPAHIK 234
Cdd:MTH00034 196 HLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQ 269
CYTB MTH00224
cytochrome b; Provisional
 1-234 7.77e-125

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 358.85  E-value: 7.77e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944   1 LLGLCLISQIATGLFLAMHYAPETSSAFASVAHICRDVNYGWLIRNMHANGASFFFVCIYIHIGRGLYYGSYLYKETWNI 80
Cdd:MTH00224  37 LLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNI 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944  81 GVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGESLVQWLWGGFAVDNATLTRFFAFHFLLPFVILALTVI 160
Cdd:MTH00224 117 GVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATIL 196

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 203284944 161 HLIFLHETGSNNPLGLPSNSDKIPFHPYYTTKDIFGFLVLLFALISLALFAPNLLGDPDNFTPANSMVTPAHIK 234
Cdd:MTH00224 197 HIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIK 270
CYTB MTH00022
cytochrome b; Validated
 1-234 2.60e-120

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 347.07  E-value: 2.60e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944   1 LLGLCLISQIATGLFLAMHYAPETSSAFASVAHICRDVNYGWLIRNMHANGASFFFVCIYIHIGRGLYYGSYLYKETWNI 80
Cdd:MTH00022  35 LLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNV 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944  81 GVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGESLVQWLWGGFAVDNATLTRFFAFHFLLPFVILALTVI 160
Cdd:MTH00022 115 GVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIV 194

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 203284944 161 HLIFLHETGSNNPLGLPSNSDKIPFHPYYTTKDIFGFLVLLFALISLALFAPNLLGDPDNFTPANSMVTPAHIK 234
Cdd:MTH00022 195 HLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQ 268
CYTB MTH00053
cytochrome b; Provisional
 1-234 1.03e-113

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 330.51  E-value: 1.03e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944   1 LLGLCLISQIATGLFLAMHYAPETSSAFASVAHICRDVNYGWLIRNMHANGASFFFVCIYIHIGRGLYYGSYLYKETWNI 80
Cdd:MTH00053  37 LLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNV 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944  81 GVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGESLVQWLWGGFAVDNATLTRFFAFHFLLPFVILALTVI 160
Cdd:MTH00053 117 GVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALV 196

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 203284944 161 HLIFLHETGSNNPLGLPSNSDKIPFHPYYTTKDIFGFLVLLFALISLALFAPNLLGDPDNFTPANSMVTPAHIK 234
Cdd:MTH00053 197 HLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIK 270
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-234 5.36e-99

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 293.23  E-value: 5.36e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944   1 LLGLCLISQIATGLFLAMHYAPETSSAFASVAHICRDVNYGWLIRNMHANGASFFFVCIYIHIGRGLYYGSYlyKE---- 76
Cdd:COG1290   45 LALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprel 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944  77 TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGESLVQWLWGGFAVDNATLTRFFAFH-FLLPFVIL 155
Cdd:COG1290  123 NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLL 202

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944 156 ALTVIHLIFLHETGSNNPLG----LPSNSDKIPFHPYYTTKDIFGFLVLLFALISLALFAPNllGDPDNFTPANSMVTPA 231
Cdd:COG1290  203 ALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPA 280


                 ...
gi 203284944 232 HIK 234
Cdd:COG1290  281 HIQ 283
CYTB MTH00033
cytochrome b; Provisional
 1-234 6.62e-89

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 267.57  E-value: 6.62e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944   1 LLGLCLISQIATGLFLAMHYAPETSSAFASVAHICRDVNYGWLIRNMHANGASFFFVCIYIHIGRGLYYGSYLYKETWNI 80
Cdd:MTH00033  33 LLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIV 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944  81 GVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGESLVQWLWGGFAVDNATLTRFFAFHFLLPFVILALTVI 160
Cdd:MTH00033 113 GVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLA 192

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 203284944 161 HLIFLHETGSNNPLGLPSNSDKIPFHPYYTTKDIFGFLVL--LFALISLALFAPNLLGDPDNFTPANSMVTPAHIK 234
Cdd:MTH00033 193 HLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILfgVFVIIGIEPRIETLLQDPENFIQANPLVTPVHIQ 268
CYTB MTH00086
cytochrome b; Provisional
 1-233 4.36e-88

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 264.49  E-value: 4.36e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944   1 LLGLCLISQIATGLFLAMHYAPETSSAFASVAHICRDVNYGWLIRNMHANGASFFFVCIYIHIGRGLYYGSYLYKETWNI 80
Cdd:MTH00086  25 MLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWIS 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944  81 GVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGESLVQWLWGGFAVDNATLTRFFAFHFLLPFVILALTVI 160
Cdd:MTH00086 105 GLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLF 184

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 203284944 161 HLIFLHETGSNNPLGLPSNSDKIPFHPYYTTKDIFGFLVLLFaLISLALFAPNLLGDPDNFTPANSMVTPAHI 233
Cdd:MTH00086 185 HLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLV-FIIFSLFYPFNLGDPEMFIEADPMMSPVHI 256
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-171 2.78e-82

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 244.20  E-value: 2.78e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944   1 LLGLCLISQIATGLFLAMHYAPETSSAFASVAHICRDVNYGWLIRNMHANGASFFFVCIYIHIGRGLYYGSY--LYKETW 78
Cdd:cd00284   28 LLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTW 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944  79 NIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGESLVQWLWGGFAVDNATLTRFFAFHFLLPFVILALT 158
Cdd:cd00284  108 VIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIV 187

                        170
                 ....*....|...
gi 203284944 159 VIHLIFLHETGSN 171
Cdd:cd00284  188 ILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-169 1.38e-76

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 229.19  E-value: 1.38e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944    1 LLGLCLISQIATGLFLAMHYAPETSSAFASVAHICRDVNYGWLIRNMHANGASFFFVCIYIHIGRGLYYG--SYLYKETW 78
Cdd:pfam00033  19 LLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTW 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944   79 NIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGESLVQWLWGGFAVDNATLTRFFAFHFLLPFVILALT 158
Cdd:pfam00033  99 VIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILM 178

                         170
                  ....*....|.
gi 203284944  159 VIHLIFLHETG 169
Cdd:pfam00033 179 LLHLLFLHETG 189
CYTB MTH00046
cytochrome b; Validated
 1-234 3.09e-68

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 213.69  E-value: 3.09e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944   1 LLGLCLISQIATGLFLAMHYAPETSSAFASVAHICRDVNYGWLIRNMHANGASFFFVCIYIHIGRGLYYGSYLYKETWNI 80
Cdd:MTH00046  27 VLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNV 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944  81 GVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGESLVQWLWGGFAVDNATLTRFFAFHFLLPFVILALTVI 160
Cdd:MTH00046 107 GFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVV 186

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 203284944 161 HLIFLHETGSNNPLGLPSN-SDKIPFHPYYTTKDIFGFLVLLFALISLALFAPNLLGDPDNFTPANSMVTPAHIK 234
Cdd:MTH00046 187 HLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIK 261
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
53-218 3.65e-54

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 171.66  E-value: 3.65e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944   53 SFFFVCIYIHIGRGLYYGSYLYKE--TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGESLVQWLW 130
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944  131 GGFAVDNATLTRFFAFHF-LLPFVILALTVIHLIFLHETGSNNPLGLPSNSDKIPFHPYYTTKDIFGFLVLLFALISLAL 209
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 203284944  210 FAPNLLGDP 218
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 4-174 1.43e-40

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 138.69  E-value: 1.43e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944   4 LCLISQIATGLFLAMHYAPETSSAFASVAHICRDVNYGWLIRNMHANGASFFFVCIYIHIGRGLYYGSYLYKE--TWNIG 81
Cdd:PRK03735  50 FCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVG 129

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944  82 VVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGESLVQWLWGGFAVDNATLTRFFAFH-FLLPFVILALTVI 160
Cdd:PRK03735 130 VLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLA 209

                        170
                 ....*....|....
gi 203284944 161 HLIFLHETGSNNPL 174
Cdd:PRK03735 210 HFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 5-174 5.39e-34

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 121.37  E-value: 5.39e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944   5 CLISQIATGLFLAMHYAPETSSAFASVAHICRDVNYGWLIRNMHANGASFFFVCIYIHIGRGLYYGSYLYKE--TWNIGV 82
Cdd:CHL00070  43 CFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGV 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 203284944  83 VLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYIGESLVQWLWGGFAVDNATLTRFFAFH-FLLPFVILALTVIH 161
Cdd:CHL00070 123 VLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMH 202

                        170
                 ....*....|...
gi 203284944 162 LIFLHETGSNNPL 174
Cdd:CHL00070 203 FLMIRKQGISGPL 215
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 172-234 1.51e-16

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 73.83  E-value: 1.51e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 203284944 172 NPLGLPSNSDKIPFHPYYTTKDIFGFLVLLFALISLALFAPNLLGDPDNFTPANSMVTPAHIK 234
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHIL 63
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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