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Conserved domains on  [gi|209867825|gb|ACI90452|]
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cytochrome b, partial (mitochondrion) [Eptesicus hottentotus]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-251 0e+00

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 518.04  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825   1 MTNTRKSHPLLKIINNSFIDLPTPSSISAWWNFGSLLGMCLVLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMLR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825  81 YLHANGASMFFICLYLHAGRGLYYGSYLYKETWNMGVILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMSL 160
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825 161 VEWIWGGFSVDKATLTRFFTFHFLLPFIISAMVMIHLLFLHETGSNNPAGIPSNMDMIPFHPYYTIKDILGFMMMITILL 240
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                        250
                 ....*....|.
gi 209867825 241 ALVLFTPDMLG 251
Cdd:MTH00100 241 LLVLFSPDLLG 251
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-251 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 518.04  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825   1 MTNTRKSHPLLKIINNSFIDLPTPSSISAWWNFGSLLGMCLVLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMLR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825  81 YLHANGASMFFICLYLHAGRGLYYGSYLYKETWNMGVILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMSL 160
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825 161 VEWIWGGFSVDKATLTRFFTFHFLLPFIISAMVMIHLLFLHETGSNNPAGIPSNMDMIPFHPYYTIKDILGFMMMITILL 240
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                        250
                 ....*....|.
gi 209867825 241 ALVLFTPDMLG 251
Cdd:MTH00100 241 LLVLFSPDLLG 251
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-206 7.63e-96

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 279.25  E-value: 7.63e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825   9 PLLKIINNSFIDLPTPSSISAWWNFGSLLGMCLVLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMLRYLHANGAS 88
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825  89 MFFICLYLHAGRGLYYGSY--LYKETWNMGVILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMSLVEWIWG 166
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 209867825 167 GFSVDKATLTRFFTFHFLLPFIISAMVMIHLLFLHETGSN 206
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
11-249 5.01e-93

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 278.98  E-value: 5.01e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825  11 LKIINNSFIDLPTPSSISAWWNFGSLLGMCLVLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMLRYLHANGASMF 90
Cdd:COG1290   20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825  91 FICLYLHAGRGLYYGSylYKE----TWNMGVILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMSLVEWIWG 166
Cdd:COG1290  100 FAAVYLHMFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825 167 GFSVDKATLTRFFTFH-FLLPFIISAMVMIHLLFLHETGSNNPAGI----PSNMDMIPFHPYYTIKDILGFMMMITILLA 241
Cdd:COG1290  178 GEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFAL 257


                 ....*...
gi 209867825 242 LVLFTPDM 249
Cdd:COG1290  258 LAFFFPIN 265
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 7.64e-86

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 253.46  E-value: 7.64e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825   18 FIDLPTPSSISAWWNFGSLLGMCLVLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMLRYLHANGASMFFICLYLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825   98 AGRGLYYG--SYLYKETWNMGVILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMSLVEWIWGGFSVDKATL 175
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 209867825  176 TRFFTFHFLLPFIISAMVMIHLLFLHETG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-251 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 518.04  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825   1 MTNTRKSHPLLKIINNSFIDLPTPSSISAWWNFGSLLGMCLVLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMLR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825  81 YLHANGASMFFICLYLHAGRGLYYGSYLYKETWNMGVILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMSL 160
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825 161 VEWIWGGFSVDKATLTRFFTFHFLLPFIISAMVMIHLLFLHETGSNNPAGIPSNMDMIPFHPYYTIKDILGFMMMITILL 240
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                        250
                 ....*....|.
gi 209867825 241 ALVLFTPDMLG 251
Cdd:MTH00100 241 LLVLFSPDLLG 251
CYTB MTH00119
cytochrome b; Provisional
 1-251 1.42e-171

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 477.86  E-value: 1.42e-171
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825   1 MTNTRKSHPLLKIINNSFIDLPTPSSISAWWNFGSLLGMCLVLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMLR 80
Cdd:MTH00119   2 APNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825  81 YLHANGASMFFICLYLHAGRGLYYGSYLYKETWNMGVILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMSL 160
Cdd:MTH00119  82 NLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825 161 VEWIWGGFSVDKATLTRFFTFHFLLPFIISAMVMIHLLFLHETGSNNPAGIPSNMDMIPFHPYYTIKDILGFMMMITILL 240
Cdd:MTH00119 162 VEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLL 241

                        250
                 ....*....|.
gi 209867825 241 ALVLFTPDMLG 251
Cdd:MTH00119 242 TLALFSPNLLG 252
CYTB MTH00131
cytochrome b; Provisional
 1-251 1.03e-170

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 475.68  E-value: 1.03e-170
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825   1 MTNTRKSHPLLKIINNSFIDLPTPSSISAWWNFGSLLGMCLVLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMLR 80
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825  81 YLHANGASMFFICLYLHAGRGLYYGSYLYKETWNMGVILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMSL 160
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825 161 VEWIWGGFSVDKATLTRFFTFHFLLPFIISAMVMIHLLFLHETGSNNPAGIPSNMDMIPFHPYYTIKDILGFMMMITILL 240
Cdd:MTH00131 161 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALT 240

                        250
                 ....*....|.
gi 209867825 241 ALVLFTPDMLG 251
Cdd:MTH00131 241 SLALFSPNLLG 251
CYTB MTH00074
cytochrome b; Provisional
 1-251 2.59e-165

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 461.84  E-value: 2.59e-165
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825   1 MTNTRKSHPLLKIINNSFIDLPTPSSISAWWNFGSLLGMCLVLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMLR 80
Cdd:MTH00074   2 AHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825  81 YLHANGASMFFICLYLHAGRGLYYGSYLYKETWNMGVILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMSL 160
Cdd:MTH00074  82 NIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825 161 VEWIWGGFSVDKATLTRFFTFHFLLPFIISAMVMIHLLFLHETGSNNPAGIPSNMDMIPFHPYYTIKDILGFMMMITILL 240
Cdd:MTH00074 162 VQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALA 241

                        250
                 ....*....|.
gi 209867825 241 ALVLFTPDMLG 251
Cdd:MTH00074 242 LLSLFSPNLLG 252
CYTB MTH00156
cytochrome b; Provisional
 11-251 2.17e-162

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 453.47  E-value: 2.17e-162
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825  11 LKIINNSFIDLPTPSSISAWWNFGSLLGMCLVLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMLRYLHANGASMF 90
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825  91 FICLYLHAGRGLYYGSYLYKETWNMGVILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMSLVEWIWGGFSV 170
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825 171 DKATLTRFFTFHFLLPFIISAMVMIHLLFLHETGSNNPAGIPSNMDMIPFHPYYTIKDILGFMMMITILLALVLFTPDML 250
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240


                 .
gi 209867825 251 G 251
Cdd:MTH00156 241 G 241
CYTB MTH00191
cytochrome b; Provisional
 5-251 2.12e-160

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 448.98  E-value: 2.12e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825   5 RKSHPLLKIINNSFIDLPTPSSISAWWNFGSLLGMCLVLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMLRYLHA 84
Cdd:MTH00191   2 RKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHA 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825  85 NGASMFFICLYLHAGRGLYYGSYLYKETWNMGVILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMSLVEWI 164
Cdd:MTH00191  82 NGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825 165 WGGFSVDKATLTRFFTFHFLLPFIISAMVMIHLLFLHETGSNNPAGIPSNMDMIPFHPYYTIKDILGFMMMITILLALVL 244
Cdd:MTH00191 162 WGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVL 241


                 ....*..
gi 209867825 245 FTPDMLG 251
Cdd:MTH00191 242 FSPNLLG 248
CYTB MTH00145
cytochrome b; Provisional
 1-251 2.87e-153

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 431.25  E-value: 2.87e-153
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825   1 MTNTRKSHPLLKIINNSFIDLPTPSSISAWWNFGSLLGMCLVLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMLR 80
Cdd:MTH00145   2 LSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825  81 YLHANGASMFFICLYLHAGRGLYYGSYLYKETWNMGVILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMSL 160
Cdd:MTH00145  82 SLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKML 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825 161 VEWIWGGFSVDKATLTRFFTFHFLLPFIISAMVMIHLLFLHETGSNNPAGIPSNMDMIPFHPYYTIKDILGFMMMITILL 240
Cdd:MTH00145 162 VEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLV 241

                        250
                 ....*....|.
gi 209867825 241 ALVLFTPDMLG 251
Cdd:MTH00145 242 FLVLFFPNLLG 252
CYTB MTH00034
cytochrome b; Validated
 5-251 3.26e-151

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 426.04  E-value: 3.26e-151
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825   5 RKSHPLLKIINNSFIDLPTPSSISAWWNFGSLLGMCLVLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMLRYLHA 84
Cdd:MTH00034   5 RKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825  85 NGASMFFICLYLHAGRGLYYGSYLYKETWNMGVILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMSLVEWI 164
Cdd:MTH00034  85 NGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWI 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825 165 WGGFSVDKATLTRFFTFHFLLPFIISAMVMIHLLFLHETGSNNPAGIPSNMDMIPFHPYYTIKDILGFMMMITILLALVL 244
Cdd:MTH00034 165 WGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLAL 244


                 ....*..
gi 209867825 245 FTPDMLG 251
Cdd:MTH00034 245 LFPTALN 251
CYTB MTH00016
cytochrome b; Validated
 5-251 4.15e-148

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 418.31  E-value: 4.15e-148
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825   5 RKSHPLLKIINNSFIDLPTPSSISAWWNFGSLLGMCLVLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMLRYLHA 84
Cdd:MTH00016   6 RKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825  85 NGASMFFICLYLHAGRGLYYGSYLYKETWNMGVILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMSLVEWI 164
Cdd:MTH00016  86 NGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWL 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825 165 WGGFSVDKATLTRFFTFHFLLPFIISAMVMIHLLFLHETGSNNPAGIPSNMDMIPFHPYYTIKDILGFMMMITILLALVL 244
Cdd:MTH00016 166 WGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVL 245


                 ....*..
gi 209867825 245 FTPDMLG 251
Cdd:MTH00016 246 LWPNILG 252
CYTB MTH00224
cytochrome b; Provisional
 5-250 2.36e-127

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 365.78  E-value: 2.36e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825   5 RKSHPLLKIINNSFIDLPTPSSISAWWNFGSLLGMCLVLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMLRYLHA 84
Cdd:MTH00224   6 RTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825  85 NGASMFFICLYLHAGRGLYYGSYLYKETWNMGVILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMSLVEWI 164
Cdd:MTH00224  86 NGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWI 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825 165 WGGFSVDKATLTRFFTFHFLLPFIISAMVMIHLLFLHETGSNNPAGIPSNMDMIPFHPYYTIKDILGFMMMITILLALVL 244
Cdd:MTH00224 166 WGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVL 245


                 ....*.
gi 209867825 245 FTPDML 250
Cdd:MTH00224 246 FEPNLF 251
CYTB MTH00022
cytochrome b; Validated
 5-251 5.29e-127

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 364.79  E-value: 5.29e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825   5 RKSHPLLKIINNSFIDLPTPSSISAWWNFGSLLGMCLVLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMLRYLHA 84
Cdd:MTH00022   4 RKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHA 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825  85 NGASMFFICLYLHAGRGLYYGSYLYKETWNMGVILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMSLVEWI 164
Cdd:MTH00022  84 NGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWV 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825 165 WGGFSVDKATLTRFFTFHFLLPFIISAMVMIHLLFLHETGSNNPAGIPSNMDMIPFHPYYTIKDILGFMMMITILLALVL 244
Cdd:MTH00022 164 WGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVY 243


                 ....*..
gi 209867825 245 FTPDMLG 251
Cdd:MTH00022 244 FAPNLLG 250
CYTB MTH00053
cytochrome b; Provisional
 1-251 2.65e-119

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 345.54  E-value: 2.65e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825   1 MTNT-RKSHPLLKIINNSFIDLPTPSSISAWWNFGSLLGMCLVLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWML 79
Cdd:MTH00053   1 MTKTiRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825  80 RYLHANGASMFFICLYLHAGRGLYYGSYLYKETWNMGVILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMS 159
Cdd:MTH00053  81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825 160 LVEWIWGGFSVDKATLTRFFTFHFLLPFIISAMVMIHLLFLHETGSNNPAGIPSNMDMIPFHPYYTIKDILGFMMMITIL 239
Cdd:MTH00053 161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240

                        250
                 ....*....|..
gi 209867825 240 LALVLFTPDMLG 251
Cdd:MTH00053 241 SIIVFLFPYSLG 252
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-206 7.63e-96

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 279.25  E-value: 7.63e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825   9 PLLKIINNSFIDLPTPSSISAWWNFGSLLGMCLVLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMLRYLHANGAS 88
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825  89 MFFICLYLHAGRGLYYGSY--LYKETWNMGVILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMSLVEWIWG 166
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 209867825 167 GFSVDKATLTRFFTFHFLLPFIISAMVMIHLLFLHETGSN 206
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00033
cytochrome b; Provisional
 16-242 2.36e-94

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 282.21  E-value: 2.36e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825  16 NSFIDLPTPSSISAWWNFGSLLGMCLVLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMLRYLHANGASMFFICLY 95
Cdd:MTH00033  13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825  96 LHAGRGLYYGSYLYKETWNMGVILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMSLVEWIWGGFSVDKATL 175
Cdd:MTH00033  93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 209867825 176 TRFFTFHFLLPFIISAMVMIHLLFLHETGSNNPAGIPSNMDMIPFHPYYTIKDILGFMMMITILLAL 242
Cdd:MTH00033 173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVII 239
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
11-249 5.01e-93

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 278.98  E-value: 5.01e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825  11 LKIINNSFIDLPTPSSISAWWNFGSLLGMCLVLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMLRYLHANGASMF 90
Cdd:COG1290   20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825  91 FICLYLHAGRGLYYGSylYKE----TWNMGVILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMSLVEWIWG 166
Cdd:COG1290  100 FAAVYLHMFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825 167 GFSVDKATLTRFFTFH-FLLPFIISAMVMIHLLFLHETGSNNPAGI----PSNMDMIPFHPYYTIKDILGFMMMITILLA 241
Cdd:COG1290  178 GEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFAL 257


                 ....*...
gi 209867825 242 LVLFTPDM 249
Cdd:COG1290  258 LAFFFPIN 265
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 7.64e-86

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 253.46  E-value: 7.64e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825   18 FIDLPTPSSISAWWNFGSLLGMCLVLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMLRYLHANGASMFFICLYLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825   98 AGRGLYYG--SYLYKETWNMGVILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMSLVEWIWGGFSVDKATL 175
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 209867825  176 TRFFTFHFLLPFIISAMVMIHLLFLHETG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
CYTB MTH00086
cytochrome b; Provisional
 12-251 1.32e-83

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 253.71  E-value: 1.32e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825  12 KIINNSFIDLPTPSSISAWWNFGSLLGMCLVLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMLRYLHANGASMFF 91
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825  92 ICLYLHAGRGLYYGSYLYKETWNMGVILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMSLVEWIWGGFSVD 171
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825 172 KATLTRFFTFHFLLPFIISAMVMIHLLFLHETGSNNPAGIPSNMDMIPFHPYYTIKDILGFMMMItILLALVLFTPDMLG 251
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWL-VFIIFSLFYPFNLG 239
CYTB MTH00046
cytochrome b; Validated
 10-250 3.10e-69

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 216.77  E-value: 3.10e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825  10 LLKIINNSFIDLPTPSSISAWWNFGSLLGMCLVLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMLRYLHANGASM 89
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825  90 FFICLYLHAGRGLYYGSYLYKETWNMGVILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMSLVEWIWGGFS 169
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825 170 VDKATLTRFFTFHFLLPFIISAMVMIHLLFLHETGSNNPAGIPSNM-DMIPFHPYYTIKDILGFMMMITILLALVLFTPD 248
Cdd:MTH00046 161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240


                 ..
gi 209867825 249 ML 250
Cdd:MTH00046 241 LV 242
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
88-247 3.33e-47

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 154.32  E-value: 3.33e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825   88 SMFFICLYLHAGRGLYYGSYLYKE--TWNMGVILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMSLVEWIW 165
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825  166 GGFSVDKATLTRFFTFHF-LLPFIISAMVMIHLLFLHETGSNNPAGIPSNMDMIPFHPYYTIKDILGFMMMITILLALVL 244
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ...
gi 209867825  245 FTP 247
Cdd:pfam13631 161 INP 163
PRK03735 PRK03735
cytochrome b6; Provisional
 33-208 4.10e-38

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 132.91  E-value: 4.10e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825  33 FGSLLGMCLVLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMLRYLHANGASMFFICLYLHAGRGLYYGSYLYKE- 111
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825 112 -TWNMGVILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMSLVEWIWGGFSVDKATLTRFFTFH-FLLPFII 189
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                        170
                 ....*....|....*....
gi 209867825 190 SAMVMIHLLFLHETGSNNP 208
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGP 222
petB CHL00070
cytochrome b6
 24-208 5.41e-34

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 121.75  E-value: 5.41e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825  24 PSSISAWWNFGSLLGMCLVLQILTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWMLRYLHANGASMFFICLYLHAGRGLY 103
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 209867825 104 YGSYLYKE--TWNMGVILLLTTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGMSLVEWIWGGFSVDKATLTRFFTF 181
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                        170       180
                 ....*....|....*....|....*...
gi 209867825 182 H-FLLPFIISAMVMIHLLFLHETGSNNP 208
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGP 214
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 207-251 4.57e-06

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 45.33  E-value: 4.57e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 209867825 207 NPAGIPSNMDMIPFHPYYTIKDILGFMMMITILLALVLFTPDMLG 251
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLG 45
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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