NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|260864482|gb|ACX51588|]
View 

tryptophan RNA-binding attenuator protein [Ammonifex degensii KC4]

Protein Classification

trp RNA-binding attenuation protein MtrB( domain architecture ID 10014152)

trp RNA-binding attenuation protein MtrB is required for transcription attenuation control in the trp operon

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PRK13251 PRK13251
trp RNA-binding attenuation protein MtrB;
7-80 2.66e-47

trp RNA-binding attenuation protein MtrB;


:

Pssm-ID: 183917  Cd Length: 75  Bit Score: 144.47  E-value: 2.66e-47
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 260864482  7 EWMWVLADYVVIRALENGVTIMGLTRGRDTKFHHTEKLDKGEVMIAQFTEHTSAIKVRGKAEILTKHGRVRTDE 80
Cdd:PRK13251  1 MEMYINGDYVVIKALENGVNVIGLTRGKDTKFHHTEKLDKGEVMIAQFTEHTSAIKIRGKAEIQTKHGEIESEE 74
 
Name Accession Description Interval E-value
PRK13251 PRK13251
trp RNA-binding attenuation protein MtrB;
7-80 2.66e-47

trp RNA-binding attenuation protein MtrB;


Pssm-ID: 183917  Cd Length: 75  Bit Score: 144.47  E-value: 2.66e-47
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 260864482  7 EWMWVLADYVVIRALENGVTIMGLTRGRDTKFHHTEKLDKGEVMIAQFTEHTSAIKVRGKAEILTKHGRVRTDE 80
Cdd:PRK13251  1 MEMYINGDYVVIKALENGVNVIGLTRGKDTKFHHTEKLDKGEVMIAQFTEHTSAIKIRGKAEIQTKHGEIESEE 74
TrpBP pfam02081
Tryptophan RNA-binding attenuator protein;
13-79 1.90e-44

Tryptophan RNA-binding attenuator protein;


Pssm-ID: 396590  Cd Length: 68  Bit Score: 137.08  E-value: 1.90e-44
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 260864482  13 ADYVVIRALENGVTIMGLTRGRDTKFHHTEKLDKGEVMIAQFTEHTSAIKVRGKAEILTKHGRVRTD 79
Cdd:pfam02081  2 ADYIVIKALENGVTVIGLTRGKDTKFHHTEKLDKGEVMIAQFTEHTSAIKIRGKAEILTKHGEIESE 68
 
Name Accession Description Interval E-value
PRK13251 PRK13251
trp RNA-binding attenuation protein MtrB;
7-80 2.66e-47

trp RNA-binding attenuation protein MtrB;


Pssm-ID: 183917  Cd Length: 75  Bit Score: 144.47  E-value: 2.66e-47
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 260864482  7 EWMWVLADYVVIRALENGVTIMGLTRGRDTKFHHTEKLDKGEVMIAQFTEHTSAIKVRGKAEILTKHGRVRTDE 80
Cdd:PRK13251  1 MEMYINGDYVVIKALENGVNVIGLTRGKDTKFHHTEKLDKGEVMIAQFTEHTSAIKIRGKAEIQTKHGEIESEE 74
TrpBP pfam02081
Tryptophan RNA-binding attenuator protein;
13-79 1.90e-44

Tryptophan RNA-binding attenuator protein;


Pssm-ID: 396590  Cd Length: 68  Bit Score: 137.08  E-value: 1.90e-44
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 260864482  13 ADYVVIRALENGVTIMGLTRGRDTKFHHTEKLDKGEVMIAQFTEHTSAIKVRGKAEILTKHGRVRTD 79
Cdd:pfam02081  2 ADYIVIKALENGVTVIGLTRGKDTKFHHTEKLDKGEVMIAQFTEHTSAIKIRGKAEILTKHGEIESE 68
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH