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Conserved domains on  [gi|283856712|gb|ADB45388|]
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cytochrome b, partial (mitochondrion) [Plasmodium sp. YU1MEX37]

Protein Classification

cytochrome b( domain architecture ID 999997)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Symbol:  CYTB
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl33360
cytochrome b; Provisional
 17-298 1.92e-101

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00156:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 302.47  E-value: 1.92e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  17 LIHYPCPLNINFLWNYGFLLGIVFFIQILTGVLLATCYTPEISYAYYSVQHILRELWSGWCFRYMHATGASFVFILTYLH 96
Cdd:MTH00156   8 LIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLH 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  97 ILRGLNYSYSYLPLSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLVSWICGGYLVS*PTLKR 172
Cdd:MTH00156  88 IGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPylgtDLVQWIWGGFSVDNATLTR 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712 173 FFVLHFTFPFIALCIVFIHIFFLHLQGSTNPLGYDTAL-KIPFYPNLLSLDIKGFNNVLVLFLAQSLFGILPLSHPDNAI 251
Cdd:MTH00156 168 FFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIdKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFI 247

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 283856712 252 TVDRYATPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMLASLQILFLL 298
Cdd:MTH00156 248 PANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMIL 294
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 17-298 1.92e-101

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 302.47  E-value: 1.92e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  17 LIHYPCPLNINFLWNYGFLLGIVFFIQILTGVLLATCYTPEISYAYYSVQHILRELWSGWCFRYMHATGASFVFILTYLH 96
Cdd:MTH00156   8 LIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLH 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  97 ILRGLNYSYSYLPLSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLVSWICGGYLVS*PTLKR 172
Cdd:MTH00156  88 IGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPylgtDLVQWIWGGFSVDNATLTR 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712 173 FFVLHFTFPFIALCIVFIHIFFLHLQGSTNPLGYDTAL-KIPFYPNLLSLDIKGFNNVLVLFLAQSLFGILPLSHPDNAI 251
Cdd:MTH00156 168 FFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIdKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFI 247

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 283856712 252 TVDRYATPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMLASLQILFLL 298
Cdd:MTH00156 248 PANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMIL 294
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
16-298 5.24e-79

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 246.63  E-value: 5.24e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  16 HLIHYPCPLNINFLWNYGFLLGIVFFIQILTGVLLATCYTPEISYAYYSVQHILRELWSGWCFRYMHATGASFVFILTYL 95
Cdd:COG1290   26 EHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYL 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  96 HILRGLNY-SYSYlP--LSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIPG----LVSWICGGYLVS*P 168
Cdd:COG1290  106 HMFRGFFYgAYKK-PreLNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVigtwLVTWLFGGEFPGDA 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712 169 TLKRFFVLH-FTFPFIALCIVFIHIFFLHLQGSTNPLGYDTALK-----IPFYPNLLSLDIKGFNNVLVLFLAqsLFGIL 242
Cdd:COG1290  185 TLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTekvdgVPFHPYYTVKDGFGFFVFLGVFAL--LAFFF 262

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 283856712 243 PLSHPDNAITVDRYATPLHIVPEWYFLPFYAMLKTIP--NKTAGLLVMLASLQILFLL 298
Cdd:COG1290  263 PINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLL 320
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 8-201 6.35e-58

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 186.03  E-value: 6.35e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712   8 YSLNLVKAHLIHYPCPLNINFLWNYGFLLGIVFFIQILTGVLLATCYTPEISYAYYSVQHILRELWSGWCFRYMHATGAS 87
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  88 FVFILTYLHILRGLNYSYSYLP--LSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLVSWICG 161
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKKPreLTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPvigiTLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 283856712 162 GYLVS*PTLKRFFVLHFTFPFIALCIVFIHIFFLHLQGST 201
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
17-199 1.64e-47

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 158.70  E-value: 1.64e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712   17 LIHYPCPLNINFLWNYGFLLGIVFFIQILTGVLLATCYTPEISYAYYSVQHILRELWSGWCFRYMHATGASFVFILTYLH 96
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712   97 ILRGLNY-SYSY-LPLSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLVSWICGGYLVS*PTL 170
Cdd:pfam00033  81 IFRGLYYgGFSYpRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPvigdTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 283856712  171 KRFFVLHFTFPFIALCIVFIHIFFLHLQG 199
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 254-290 1.11e-06

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 47.87  E-value: 1.11e-06
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 283856712  254 DRYATPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMLA 290
Cdd:TIGR01156  67 NPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAA 103
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 17-298 1.92e-101

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 302.47  E-value: 1.92e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  17 LIHYPCPLNINFLWNYGFLLGIVFFIQILTGVLLATCYTPEISYAYYSVQHILRELWSGWCFRYMHATGASFVFILTYLH 96
Cdd:MTH00156   8 LIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLH 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  97 ILRGLNYSYSYLPLSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLVSWICGGYLVS*PTLKR 172
Cdd:MTH00156  88 IGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPylgtDLVQWIWGGFSVDNATLTR 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712 173 FFVLHFTFPFIALCIVFIHIFFLHLQGSTNPLGYDTAL-KIPFYPNLLSLDIKGFNNVLVLFLAQSLFGILPLSHPDNAI 251
Cdd:MTH00156 168 FFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIdKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFI 247

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 283856712 252 TVDRYATPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMLASLQILFLL 298
Cdd:MTH00156 248 PANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMIL 294
CYTB MTH00145
cytochrome b; Provisional
 10-298 1.58e-97

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 293.35  E-value: 1.58e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  10 LNLVKAHLIHYPCPLNINFLWNYGFLLGIVFFIQILTGVLLATCYTPEISYAYYSVQHILRELWSGWCFRYMHATGASFV 89
Cdd:MTH00145  12 LKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFF 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  90 FILTYLHILRGLNYSySYLPL-SWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIPG----LVSWICGGYL 164
Cdd:MTH00145  92 FICIYLHIGRGLYYG-SYLMQhTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYvgkmLVEWVWGGFS 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712 165 VS*PTLKRFFVLHFTFPFIALCIVFIHIFFLHLQGSTNPLGYDTAL-KIPFYPNLLSLDIKGFNNVLVLFLAQSLFGILP 243
Cdd:MTH00145 171 VGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGdKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNL 250

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 283856712 244 LSHPDNAITVDRYATPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMLASLQILFLL 298
Cdd:MTH00145 251 LGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFL 305
CYTB MTH00191
cytochrome b; Provisional
 10-339 8.06e-97

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 291.05  E-value: 8.06e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  10 LNLVKAHLIHYPCPLNINFLWNYGFLLGIVFFIQILTGVLLATCYTPEISYAYYSVQHILRELWSGWCFRYMHATGASFV 89
Cdd:MTH00191   8 LKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFF 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  90 FILTYLHILRGLNYSYSYLPLSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLL----YFIPGLVSWICGGYLV 165
Cdd:MTH00191  88 FICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLsaipYIGDDLVQWLWGGFSV 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712 166 S*PTLKRFFVLHFTFPFIALCIVFIHIFFLHLQGSTNPLGYDT-ALKIPFYPNLLSLDIKGFNNVLVLFLAQSLFGILPL 244
Cdd:MTH00191 168 DNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSdSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLL 247

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712 245 SHPDNAITVDRYATPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMLASLQILFLL-----AEQRNLTTLIQFKFAFgarey 319
Cdd:MTH00191 248 GDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLpllhtSKQRSNTFRPLTQVVF----- 322

                        330       340
                 ....*....|....*....|.
gi 283856712 320 svptiW-FICSFYALLWIGCQ 339
Cdd:MTH00191 323 -----WlWVANFILLTWLGGQ 338
CYTB MTH00119
cytochrome b; Provisional
 10-339 8.65e-95

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 286.41  E-value: 8.65e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  10 LNLVKAHLIHYPCPLNINFLWNYGFLLGIVFFIQILTGVLLATCYTPEISYAYYSVQHILRELWSGWCFRYMHATGASFV 89
Cdd:MTH00119  12 LKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMF 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  90 FILTYLHILRGLNYSySYL-PLSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLVSWICGGYL 164
Cdd:MTH00119  92 FICIYLHIGRGLYYG-SYLyKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPyigqTLVEWIWGGFS 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712 165 VS*PTLKRFFVLHFTFPFIALCIVFIHIFFLHLQGSTNPLGYDTAL-KIPFYPNLLSLDIKGFNNVLVLFLAQSLFGILP 243
Cdd:MTH00119 171 VDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTdKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNL 250

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712 244 LSHPDNAITVDRYATPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMLASLQILFLL-----AEQRNLTT--LIQFKFafga 316
Cdd:MTH00119 251 LGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMpflhtSKQRSMTFrpLSQLLF---- 326

                        330       340
                 ....*....|....*....|....
gi 283856712 317 reysvptiW-FICSFYALLWIGCQ 339
Cdd:MTH00119 327 --------WtLVANLLILTWIGSQ 342
CYTB MTH00016
cytochrome b; Validated
 17-337 1.98e-92

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 280.41  E-value: 1.98e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  17 LIHYPCPLNINFLWNYGFLLGIVFFIQILTGVLLATCYTPEISYAYYSVQHILRELWSGWCFRYMHATGASFVFILTYLH 96
Cdd:MTH00016  19 LVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLH 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  97 ILRGLNYSYSYLPLSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLVSWICGGYLVS*PTLKR 172
Cdd:MTH00016  99 IGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPyigkMLVQWLWGGFSVDNATLTR 178

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712 173 FFVLHFTFPFIALCIVFIHIFFLHLQGSTNPLGYDTAL-KIPFYPNLLSLDIKGFNNVLVLFLAQSLFGILPLSHPDNAI 251
Cdd:MTH00016 179 FFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSdKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFI 258

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712 252 TVDRYATPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMLASLQILFLLAeqrnLTTLIQFKfafGAREYSVPTI---WFIC 328
Cdd:MTH00016 259 PANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLP----FIFKQKFR---GLSFYPLNQIlfwLLVS 331


                 ....*....
gi 283856712 329 SFYALLWIG 337
Cdd:MTH00016 332 NFLLLTWIG 340
CYTB MTH00131
cytochrome b; Provisional
 17-312 3.74e-91

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 277.30  E-value: 3.74e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  17 LIHYPCPLNINFLWNYGFLLGIVFFIQILTGVLLATCYTPEISYAYYSVQHILRELWSGWCFRYMHATGASFVFILTYLH 96
Cdd:MTH00131  18 LVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLH 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  97 ILRGLNY-SYSYLPlSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLVSWICGGYLVS*PTLK 171
Cdd:MTH00131  98 IGRGLYYgSYLYKE-TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPyvgnTLVQWIWGGFSVDNATLT 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712 172 RFFVLHFTFPFIALCIVFIHIFFLHLQGSTNPLGYDT-ALKIPFYPNLLSLDIKGFNNVLVLFLAQSLFGILPLSHPDNA 250
Cdd:MTH00131 177 RFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSdADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNF 256

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 283856712 251 ITVDRYATPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMLASLQILFLL-----AEQRNLT--TLIQFKF 312
Cdd:MTH00131 257 TPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVpilhtSKQRGLTfrPLTQFLF 325
CYTB MTH00100
cytochrome b; Provisional
 17-339 2.11e-89

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 272.67  E-value: 2.11e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  17 LIHYPCPLNINFLWNYGFLLGIVFFIQILTGVLLATCYTPEISYAYYSVQHILRELWSGWCFRYMHATGASFVFILTYLH 96
Cdd:MTH00100  18 FIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLH 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  97 ILRGLNY-SYSYLPlSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLVSWICGGYLVS*PTLK 171
Cdd:MTH00100  98 VGRGLYYgSYLFLE-TWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPyigtTLVEWIWGGFSVDKATLT 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712 172 RFFVLHFTFPFIALCIVFIHIFFLHLQGSTNPLGYDT-ALKIPFYPNLLSLDIKGFNNVLVLFLAQSLFGILPLSHPDNA 250
Cdd:MTH00100 177 RFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSdSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNY 256

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712 251 ITVDRYATPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMLASLQILFLL-----AEQRNLTTliqfkfafgaREYSVPTIW 325
Cdd:MTH00100 257 TPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIpllhtSKQRSMMF----------RPLSQCLFW 326

                        330
                 ....*....|....*
gi 283856712 326 F-ICSFYALLWIGCQ 339
Cdd:MTH00100 327 LlVADLLTLTWIGGQ 341
CYTB MTH00074
cytochrome b; Provisional
 10-305 5.77e-86

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 263.85  E-value: 5.77e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  10 LNLVKAHLIHYPCPLNINFLWNYGFLLGIVFFIQILTGVLLATCYTPEISYAYYSVQHILRELWSGWCFRYMHATGASFV 89
Cdd:MTH00074  12 LKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFF 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  90 FILTYLHILRGLNYSYSYLPLSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLVSWICGGYLV 165
Cdd:MTH00074  92 FICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPymgdTLVQWIWGGFSV 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712 166 S*PTLKRFFVLHFTFPFIALCIVFIHIFFLHLQGSTNPLGYDTAL-KIPFYPNLLSLDIKGFNNVLVLFLAQSLFGILPL 244
Cdd:MTH00074 172 DKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPdKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLL 251

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 283856712 245 SHPDNAITVDRYATPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMLASLQILFLL-----AEQRNLT 305
Cdd:MTH00074 252 GDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIpmlhtSKQRSLM 317
CYTB MTH00034
cytochrome b; Validated
 10-339 1.44e-84

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 260.41  E-value: 1.44e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  10 LNLVKAHLIHYPCPLNINFLWNYGFLLGIVFFIQILTGVLLATCYTPEISYAYYSVQHILRELWSGWCFRYMHATGASFV 89
Cdd:MTH00034  11 FKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLF 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  90 FILTYLHILRGLNYSYSYLPLSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLVSWICGGYLV 165
Cdd:MTH00034  91 FICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPyigtDIVQWIWGGFSV 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712 166 S*PTLKRFFVLHFTFPFIALCIVFIHIFFLHLQGSTNPLGYDTAL-KIPFYPNLLSLDIKGFNNVLVLFLAQSLFGILPL 244
Cdd:MTH00034 171 DNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYdKVPFHTYFTTKDLVGFLILFAALSSLALLFPTAL 250

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712 245 SHPDNAITVDRYATPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMLASLQILFLLAEqrnLTTLIQFKFAFgaREYSVPTI 324
Cdd:MTH00034 251 NDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPI---LHTSNNQSSTF--RPLSQIAF 325

                        330
                 ....*....|....*.
gi 283856712 325 W-FICSFYALLWIGCQ 339
Cdd:MTH00034 326 WlLIATFFILTWIGSQ 341
CYTB MTH00022
cytochrome b; Validated
 10-339 4.40e-80

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 248.85  E-value: 4.40e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  10 LNLVKAHLIHYPCPLNINFLWNYGFLLGIVFFIQILTGVLLATCYTPEISYAYYSVQHILRELWSGWCFRYMHATGASFV 89
Cdd:MTH00022  10 LSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLF 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  90 FILTYLHILRGLNY-SYSYLPLsWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLVSWICGGYL 164
Cdd:MTH00022  90 FLCLYIHIGRGLYYgGYLKFHV-WNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPyvgtDIVQWVWGGFS 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712 165 VS*PTLKRFFVLHFTFPFIALCIVFIHIFFLHLQGSTNPLGYDTAL-KIPFYPNLLSLDIKGFNNVLVLFLAQSLFGILP 243
Cdd:MTH00022 169 VSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVdKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNL 248

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712 244 LSHPDNAITVDRYATPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMLASLQILFLL-----AEQRNLTTLIQFKFAFgare 318
Cdd:MTH00022 249 LGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLpllhtSWLRGLTFRPLGRMAF---- 324

                        330       340
                 ....*....|....*....|..
gi 283856712 319 ysvptiWF-ICSFYALLWIGCQ 339
Cdd:MTH00022 325 ------WFlIVDFILLTWIGSQ 340
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
16-298 5.24e-79

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 246.63  E-value: 5.24e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  16 HLIHYPCPLNINFLWNYGFLLGIVFFIQILTGVLLATCYTPEISYAYYSVQHILRELWSGWCFRYMHATGASFVFILTYL 95
Cdd:COG1290   26 EHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYL 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  96 HILRGLNY-SYSYlP--LSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIPG----LVSWICGGYLVS*P 168
Cdd:COG1290  106 HMFRGFFYgAYKK-PreLNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVigtwLVTWLFGGEFPGDA 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712 169 TLKRFFVLH-FTFPFIALCIVFIHIFFLHLQGSTNPLGYDTALK-----IPFYPNLLSLDIKGFNNVLVLFLAqsLFGIL 242
Cdd:COG1290  185 TLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTekvdgVPFHPYYTVKDGFGFFVFLGVFAL--LAFFF 262

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 283856712 243 PLSHPDNAITVDRYATPLHIVPEWYFLPFYAMLKTIP--NKTAGLLVMLASLQILFLL 298
Cdd:COG1290  263 PINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLL 320
CYTB MTH00224
cytochrome b; Provisional
 10-298 1.33e-76

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 239.82  E-value: 1.33e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  10 LNLVKAHLIHYPCPLNINFLWNYGFLLGIVFFIQILTGVLLATCYTPEISYAYYSVQHILRELWSGWCFRYMHATGASFV 89
Cdd:MTH00224  12 IKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMF 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  90 FILTYLHILRGLNYSYSYLPLSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLVSWICGGYLV 165
Cdd:MTH00224  92 FLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPyigkDLVEWIWGGFAV 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712 166 S*PTLKRFFVLHFTFPFIALCIVFIHIFFLHLQGSTNPLGYDT-ALKIPFYPNLLSLDIKGFNNVLVLFLAQSLFGILPL 244
Cdd:MTH00224 172 DNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINAdSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLF 251

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 283856712 245 SHPDNAITVDRYATPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMLASLQILFLL 298
Cdd:MTH00224 252 TDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFIL 305
CYTB MTH00053
cytochrome b; Provisional
 10-339 6.61e-75

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 235.76  E-value: 6.61e-75
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  10 LNLVKAHLIHYPCPLNINFLWNYGFLLGIVFFIQILTGVLLATCYTPEISYAYYSVQHILRELWSGWCFRYMHATGASFV 89
Cdd:MTH00053  12 ISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMF 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  90 FILTYLHILRGLNYSYSYLPLSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLVSWICGGYLV 165
Cdd:MTH00053  92 FLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPyvgdDIVRWVWGGFSV 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712 166 S*PTLKRFFVLHFTFPFIALCIVFIHIFFLHLQGSTNPLGYDTAL-KIPFYPNLLSLDIKGfnNVLVLFLAQSLFGILP- 243
Cdd:MTH00053 172 SNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIdKIPFHYYYVLKDLYG--AVILLIILSIIVFLFPy 249

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712 244 -LSHPDNAITVDRYATPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMLASLQILFLLAeqrnLTTLIQFKfAFGAREYSVP 322
Cdd:MTH00053 250 sLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLP----YLHKSRFR-GLSFRPLSKI 324

                        330
                 ....*....|....*...
gi 283856712 323 TIWF-ICSFYALLWIGCQ 339
Cdd:MTH00053 325 LFWFlVGDFFLLTWIGGQ 342
CYTB MTH00086
cytochrome b; Provisional
 11-337 4.62e-74

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 232.52  E-value: 4.62e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  11 NLVKAHLIHYPCPLNINFLWNYGFLLGIVFFIQILTGVLLATCYTPEISYAYYSVQHILRELWSGWCFRYMHATGASFVF 90
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  91 ILTYLHILRGLNYSYSYLPLSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLVSWICGGYLVS 166
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPiwgpSIVMWIWGGFGVS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712 167 *PTLKRFFVLHFTFPFIALCIVFIHIFFLHLQGSTNPLG-YDTALKIPFYPNLLSLDIKGFNNVLVLFLAqSLFGILPLS 245
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYcHGDYDKICFGPEYWNKDAYNIIFWLVFIIF-SLFYPFNLG 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712 246 HPDNAITVDRYATPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMLASLQILFLLAEQRNLTTLIQFKFAFgareysvPTIW 325
Cdd:MTH00086 240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYTSCLNKLNKF-------LVFS 312

                        330
                 ....*....|..
gi 283856712 326 FICSFYALLWIG 337
Cdd:MTH00086 313 FIVVNVILSWLG 324
CYTB MTH00033
cytochrome b; Provisional
 17-337 1.55e-67

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 216.73  E-value: 1.55e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  17 LIHYPCPLNINFLWNYGFLLGIVFFIQILTGVLLATCYTPEISYAYYSVQHILRELWSGWCFRYMHATGASFVFILTYLH 96
Cdd:MTH00033  15 IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCH 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  97 ILRGLNYSYSYLPLSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLVSWICGGYLVS*PTLKR 172
Cdd:MTH00033  95 IGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPsvggSIVEWIWGGFSVSNCTLNR 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712 173 FFVLHFTFPFIALCIVFIHIFFLHLQGSTNPLGY-DTALKIPFYPNLLSLDIKGFnnvLVLFLAQSLFGILP-----LSH 246
Cdd:MTH00033 175 FFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLvGLSDRTAFHVYFTIKDILGF---LILFGVFVIIGIEPrietlLQD 251

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712 247 PDNAITVDRYATPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMLASLQILFLL-----AEQRNLTTLIQFKFAFgareysv 321
Cdd:MTH00033 252 PENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMpildrSKIRSLTFNPTGKFFF------- 324

                        330
                 ....*....|....*..
gi 283856712 322 ptiWFIC-SFYALLWIG 337
Cdd:MTH00033 325 ---WFIVgDFIILTWIG 338
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 8-201 6.35e-58

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 186.03  E-value: 6.35e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712   8 YSLNLVKAHLIHYPCPLNINFLWNYGFLLGIVFFIQILTGVLLATCYTPEISYAYYSVQHILRELWSGWCFRYMHATGAS 87
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  88 FVFILTYLHILRGLNYSYSYLP--LSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLVSWICG 161
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKKPreLTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPvigiTLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 283856712 162 GYLVS*PTLKRFFVLHFTFPFIALCIVFIHIFFLHLQGST 201
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
17-199 1.64e-47

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 158.70  E-value: 1.64e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712   17 LIHYPCPLNINFLWNYGFLLGIVFFIQILTGVLLATCYTPEISYAYYSVQHILRELWSGWCFRYMHATGASFVFILTYLH 96
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712   97 ILRGLNY-SYSY-LPLSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLVSWICGGYLVS*PTL 170
Cdd:pfam00033  81 IFRGLYYgGFSYpRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPvigdTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 283856712  171 KRFFVLHFTFPFIALCIVFIHIFFLHLQG 199
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
CYTB MTH00046
cytochrome b; Validated
 10-297 2.13e-47

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 163.62  E-value: 2.13e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  10 LNLVKAHLIHYPCPLNINFLWNYGFLLGIVFFIQILTGVLLATCYTPEISYAYYSVQHILRELWSGWCFRYMHATGASFV 89
Cdd:MTH00046   2 ISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  90 FILTYLHILRGLNYSYSYLPLSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLVSWICGGYLV 165
Cdd:MTH00046  82 FILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPivgsLVYKYIVGGFSV 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712 166 S*PTLKRFFVLHFTFPFIALCIVFIHIFFLHLQGSTNPLgydtalkipFYPNLLSlDIKGFN------NVLVLFLAQSLF 239
Cdd:MTH00046 162 TGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPL---------FSSNGYS-DVVYFHsyftvkDLFLFMVVCSLL 231

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 283856712 240 GILPLSHPDNAITVDRY------ATPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMLASLQILFL 297
Cdd:MTH00046 232 VFWLFVSPDLVLDIEAYleadplVTPVSIKPEWYFLAFYAMLRSINSKIGGLVLVLSFLFFLWV 295
PRK03735 PRK03735
cytochrome b6; Provisional
 28-204 3.01e-24

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 98.63  E-value: 3.01e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  28 FLWNYGFLLGIVFFIQILTGVLLATCYTPEISYAYYSVQHILRELWSGWCFRYMHATGASFVFILTYLHILRgLNYSYSY 107
Cdd:PRK03735  40 FVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLR-VFFTGGY 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712 108 ---LPLSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIP----GLVSWICGGYLVS*PTLKRFFVLH-FT 179
Cdd:PRK03735 119 kkpRELNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPvigdFIKTLLRGGEIVGAQTLTRFFAIHvFF 198

                        170       180
                 ....*....|....*....|....*
gi 283856712 180 FPFIALCIVFIHIFFLHLQGSTNPL 204
Cdd:PRK03735 199 LPWALAVLMLAHFLMIRKQGISGPL 223
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
87-247 8.18e-20

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 84.99  E-value: 8.18e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712   87 SFVFILTYLHILRGLnYSYSYL---PLSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIPG----LVSWI 159
Cdd:pfam13631   1 YIFIAAIYVHMLRIF-FTGAYRkprELNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVvgtwLVWLL 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  160 CGGYLVS*PTLKRFFVLHFT-FPFIALCIVFIHIFFLHLQGSTNPLG-YDTALKIPFYPNLLSLDIKGFNNVLVLFLAQS 237
Cdd:pfam13631  80 FGGPFPGTATIPRFYALHILlLPGLILALIVAHLLLVEKHGQFPPPGtEKNVVGVPFWPVFAVKMLLFFLITVALLIGLA 159

                         170
                  ....*....|
gi 283856712  238 LFGILPLSHP 247
Cdd:pfam13631 160 QINPIWLGGP 169
petB CHL00070
cytochrome b6
 23-204 3.59e-19

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 84.39  E-value: 3.59e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  23 PLNINFLWNYGFLLGIVFFIQILTGVLLATCYTPEISYAYYSVQHILRELWSGWCFRYMHATGASFVFILTYLHILRGLN 102
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712 103 YSYSYLP--LSWISGLIIFLISIVTAFMGYVLPWGQMSFWGATVITNLLYFIPG----LVSWICGGYLVS*PTLKRFFVL 176
Cdd:CHL00070 107 TGGFKKPreLTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVigspLVELLRGSVSVGQSTLTRFYSL 186

                        170       180
                 ....*....|....*....|....*....
gi 283856712 177 H-FTFPFIALCIVFIHIFFLHLQGSTNPL 204
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
258-339 7.47e-18

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 77.52  E-value: 7.47e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712  258 TPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMLASLQILFLLAE-QRNLTTLIQFKFAFgareySVPTIWFICSFYALLWI 336
Cdd:pfam00032   7 TPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWlDRSPVRSIRYRPLF-----KIFFWLFVVDFVVLGWL 81


                  ...
gi 283856712  337 GCQ 339
Cdd:pfam00032  82 GKQ 84
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 211-339 1.47e-16

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 75.37  E-value: 1.47e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712 211 KIPFYPNLLSLDIKGFNNVLVLFLAQSLFGILPLSHPDNAITVDRYATPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMLA 290
Cdd:cd00290   11 KISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPNKLLGVLAMAA 90

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 283856712 291 SLQILFLLAEQRNLTTLIQFKFAfgareYSVPTIWFICSFYALLWIGCQ 339
Cdd:cd00290   91 SILSLFLVPFLENSNKRSQFRPL-----RPTAFWVFLAGTLVLGWLGIQ 134
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 227-290 3.80e-08

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 52.10  E-value: 3.80e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283856712 227 NNVLVLF---LAQSLFGILPLSHPDNAIT---VDRYATPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMLA 290
Cdd:COG5679   35 NDLLYIFpvvILGTIALCIGLAVLDPAMMgepADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAA 104
petD CHL00058
cytochrome b6/f complex subunit IV
 254-290 6.51e-08

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 51.54  E-value: 6.51e-08
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 283856712 254 DRYATPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMLA 290
Cdd:CHL00058  67 DPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMAS 103
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 254-290 1.11e-06

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 47.87  E-value: 1.11e-06
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 283856712  254 DRYATPLHIVPEWYFLPFYAMLKTIPNKTAGLLVMLA 290
Cdd:TIGR01156  67 NPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAA 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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