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Conserved domains on  [gi|284448895|gb|ADB89187|]
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cytochrome b, partial (mitochondrion) [Fistularia commersonii]

Protein Classification

cytochrome b( domain architecture ID 1000003)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Symbol:  CYTB
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31802
cytochrome b; Provisional
 1-94 2.66e-69

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00131:

Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 211.05  E-value: 2.66e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284448895   1 FLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYMHIARGLYYGSYLYKETWNVGVVLLLLVMMTAFV 80
Cdd:MTH00131  50 FLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFV 129

                         90
                 ....*....|....
gi 284448895  81 GYVLPWGQMSFWGA 94
Cdd:MTH00131 130 GYVLPWGQMSFWGA 143
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-94 2.66e-69

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 211.05  E-value: 2.66e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284448895   1 FLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYMHIARGLYYGSYLYKETWNVGVVLLLLVMMTAFV 80
Cdd:MTH00131  50 FLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFV 129

                         90
                 ....*....|....
gi 284448895  81 GYVLPWGQMSFWGA 94
Cdd:MTH00131 130 GYVLPWGQMSFWGA 143
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-94 2.01e-38

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 126.71  E-value: 2.01e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284448895   1 FLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYMHIARGLYYGSY--LYKETWNVGVVLLLLVMMTA 78
Cdd:cd00284   42 FLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATA 121

                         90
                 ....*....|....*.
gi 284448895  79 FVGYVLPWGQMSFWGA 94
Cdd:cd00284  122 FMGYVLPWGQMSYWGA 137
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-94 1.95e-35

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 119.02  E-value: 1.95e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284448895    1 FLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYMHIARGLYYG--SYLYKETWNVGVVLLLLVMMTA 78
Cdd:pfam00033  33 FLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTA 112

                          90
                  ....*....|....*.
gi 284448895   79 FVGYVLPWGQMSFWGA 94
Cdd:pfam00033 113 FIGYVLPWGQMSYWGA 128
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-94 3.20e-33

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 117.97  E-value: 3.20e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284448895   1 FLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYMHIARGLYYGSylYKE----TWNVGVVLLLLVMM 76
Cdd:COG1290   59 FLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGA--YKKprelNWIIGVLLLLLTMA 136

                         90
                 ....*....|....*...
gi 284448895  77 TAFVGYVLPWGQMSFWGA 94
Cdd:COG1290  137 EAFTGYSLPWDQLSYWGA 154
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-94 2.66e-69

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 211.05  E-value: 2.66e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284448895   1 FLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYMHIARGLYYGSYLYKETWNVGVVLLLLVMMTAFV 80
Cdd:MTH00131  50 FLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFV 129

                         90
                 ....*....|....
gi 284448895  81 GYVLPWGQMSFWGA 94
Cdd:MTH00131 130 GYVLPWGQMSFWGA 143
CYTB MTH00119
cytochrome b; Provisional
 1-94 4.48e-64

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 197.82  E-value: 4.48e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284448895   1 FLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYMHIARGLYYGSYLYKETWNVGVVLLLLVMMTAFV 80
Cdd:MTH00119  51 FLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFV 130

                         90
                 ....*....|....
gi 284448895  81 GYVLPWGQMSFWGA 94
Cdd:MTH00119 131 GYVLPWGQMSFWGA 144
CYTB MTH00100
cytochrome b; Provisional
 1-94 3.09e-61

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 190.23  E-value: 3.09e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284448895   1 FLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYMHIARGLYYGSYLYKETWNVGVVLLLLVMMTAFV 80
Cdd:MTH00100  50 FLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFM 129

                         90
                 ....*....|....
gi 284448895  81 GYVLPWGQMSFWGA 94
Cdd:MTH00100 130 GYVLPWGQMSFWGA 143
CYTB MTH00074
cytochrome b; Provisional
 1-94 4.21e-61

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 189.89  E-value: 4.21e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284448895   1 FLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYMHIARGLYYGSYLYKETWNVGVVLLLLVMMTAFV 80
Cdd:MTH00074  51 FLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFV 130

                         90
                 ....*....|....
gi 284448895  81 GYVLPWGQMSFWGA 94
Cdd:MTH00074 131 GYVLPWGQMSFWGA 144
CYTB MTH00191
cytochrome b; Provisional
 1-94 1.61e-59

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 185.50  E-value: 1.61e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284448895   1 FLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYMHIARGLYYGSYLYKETWNVGVVLLLLVMMTAFV 80
Cdd:MTH00191  47 FLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFL 126

                         90
                 ....*....|....
gi 284448895  81 GYVLPWGQMSFWGA 94
Cdd:MTH00191 127 GYVLPWGQMSFWGA 140
CYTB MTH00156
cytochrome b; Provisional
 1-94 1.76e-57

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 179.98  E-value: 1.76e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284448895   1 FLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYMHIARGLYYGSYLYKETWNVGVVLLLLVMMTAFV 80
Cdd:MTH00156  40 FLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFL 119

                         90
                 ....*....|....
gi 284448895  81 GYVLPWGQMSFWGA 94
Cdd:MTH00156 120 GYVLPWGQMSFWGA 133
CYTB MTH00034
cytochrome b; Validated
 1-94 8.44e-55

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 173.74  E-value: 8.44e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284448895   1 FLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYMHIARGLYYGSYLYKETWNVGVVLLLLVMMTAFV 80
Cdd:MTH00034  50 FLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFV 129

                         90
                 ....*....|....
gi 284448895  81 GYVLPWGQMSFWGA 94
Cdd:MTH00034 130 GYVLPWGQMSFWAA 143
CYTB MTH00145
cytochrome b; Provisional
 1-94 1.48e-53

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 170.47  E-value: 1.48e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284448895   1 FLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYMHIARGLYYGSYLYKETWNVGVVLLLLVMMTAFV 80
Cdd:MTH00145  51 FLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFL 130

                         90
                 ....*....|....
gi 284448895  81 GYVLPWGQMSFWGA 94
Cdd:MTH00145 131 GYVLPWGQMSFWGA 144
CYTB MTH00016
cytochrome b; Validated
 1-94 5.62e-50

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 161.38  E-value: 5.62e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284448895   1 FLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYMHIARGLYYGSYLYKETWNVGVVLLLLVMMTAFV 80
Cdd:MTH00016  51 FLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFL 130

                         90
                 ....*....|....
gi 284448895  81 GYVLPWGQMSFWGA 94
Cdd:MTH00016 131 GYVLPWGQMSFWGA 144
CYTB MTH00022
cytochrome b; Validated
 1-94 1.61e-42

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 142.15  E-value: 1.61e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284448895   1 FLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYMHIARGLYYGSYLYKETWNVGVVLLLLVMMTAFV 80
Cdd:MTH00022  49 FLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFM 128

                         90
                 ....*....|....
gi 284448895  81 GYVLPWGQMSFWGA 94
Cdd:MTH00022 129 GYVLPWGQMSFWGA 142
CYTB MTH00224
cytochrome b; Provisional
 1-94 2.18e-42

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 141.60  E-value: 2.18e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284448895   1 FLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYMHIARGLYYGSYLYKETWNVGVVLLLLVMMTAFV 80
Cdd:MTH00224  51 FLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFL 130

                         90
                 ....*....|....
gi 284448895  81 GYVLPWGQMSFWGA 94
Cdd:MTH00224 131 GYVLPWGQMSFWGA 144
CYTB MTH00053
cytochrome b; Provisional
 1-95 2.14e-40

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 136.76  E-value: 2.14e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284448895   1 FLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYMHIARGLYYGSYLYKETWNVGVVLLLLVMMTAFV 80
Cdd:MTH00053  51 FLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFI 130

                         90
                 ....*....|....*
gi 284448895  81 GYVLPWGQMSFWGAA 95
Cdd:MTH00053 131 GYVLPWGQMSFWAAT 145
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-94 2.01e-38

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 126.71  E-value: 2.01e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284448895   1 FLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYMHIARGLYYGSY--LYKETWNVGVVLLLLVMMTA 78
Cdd:cd00284   42 FLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATA 121

                         90
                 ....*....|....*.
gi 284448895  79 FVGYVLPWGQMSFWGA 94
Cdd:cd00284  122 FMGYVLPWGQMSYWGA 137
CYTB MTH00033
cytochrome b; Provisional
 1-94 1.15e-35

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 124.28  E-value: 1.15e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284448895   1 FLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYMHIARGLYYGSYLYKETWNVGVVLLLLVMMTAFV 80
Cdd:MTH00033  47 LLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFI 126

                         90
                 ....*....|....
gi 284448895  81 GYVLPWGQMSFWGA 94
Cdd:MTH00033 127 GYVLPWGQMSFWAA 140
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-94 1.95e-35

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 119.02  E-value: 1.95e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284448895    1 FLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYMHIARGLYYG--SYLYKETWNVGVVLLLLVMMTA 78
Cdd:pfam00033  33 FLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTA 112

                          90
                  ....*....|....*.
gi 284448895   79 FVGYVLPWGQMSFWGA 94
Cdd:pfam00033 113 FIGYVLPWGQMSYWGA 128
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-94 3.20e-33

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 117.97  E-value: 3.20e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284448895   1 FLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYMHIARGLYYGSylYKE----TWNVGVVLLLLVMM 76
Cdd:COG1290   59 FLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGA--YKKprelNWIIGVLLLLLTMA 136

                         90
                 ....*....|....*...
gi 284448895  77 TAFVGYVLPWGQMSFWGA 94
Cdd:COG1290  137 EAFTGYSLPWDQLSYWGA 154
CYTB MTH00086
cytochrome b; Provisional
 1-94 1.06e-29

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 108.10  E-value: 1.06e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284448895   1 FLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYMHIARGLYYGSYLYKETWNVGVVLLLLVMMTAFV 80
Cdd:MTH00086  39 FLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFM 118

                         90
                 ....*....|....
gi 284448895  81 GYVLPWGQMSFWGA 94
Cdd:MTH00086 119 GYVLVWAQMSFWAA 132
CYTB MTH00046
cytochrome b; Validated
 1-94 6.97e-19

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 78.87  E-value: 6.97e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284448895   1 FLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYMHIARGLYYGSYLYKETWNVGVVLLLLVMMTAFV 80
Cdd:MTH00046  41 LLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFL 120

                         90
                 ....*....|....
gi 284448895  81 GYVLPWGQMSFWGA 94
Cdd:MTH00046 121 GYILPWHQMSYWAA 134
PRK03735 PRK03735
cytochrome b6; Provisional
 1-92 4.06e-15

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 67.43  E-value: 4.06e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284448895   1 FLAMHYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYMHIARGLYYGSYLYKE--TWNVGVVLLLLVMMTA 78
Cdd:PRK03735  61 FLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFFVTVGLG 140

                         90
                 ....*....|....
gi 284448895  79 FVGYVLPWGQMSFW 92
Cdd:PRK03735 141 FTGYLLPWDQKAYF 154
petB CHL00070
cytochrome b6
 5-92 1.20e-09

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 52.42  E-value: 1.20e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 284448895   5 HYTSDIATAFSSVAHICRDVNYGWLIRNMHANGASFFFICIYMHIARGLYYGSYLYKE--TWNVGVVLLLLVMMTAFVGY 82
Cdd:CHL00070  57 YYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAVLTVSFGVTGY 136

                         90
                 ....*....|
gi 284448895  83 VLPWGQMSFW 92
Cdd:CHL00070 137 SLPWDQIGYW 146
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
39-94 1.62e-09

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 51.47  E-value: 1.62e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 284448895   39 SFFFICIYMHIARGLYYGSYLYKE--TWNVGVVLLLLVMMTAFVGYVLPWGQMSFWGA 94
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGL 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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