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Conserved domains on  [gi|292667282|gb|ADE37131|]
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hypothetical protein Mmah_1635 [Methanohalophilus mahii DSM 5219]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
sarcinarray TIGR04209
sarcinarray family protein; Members of this protein family are exclusive to archaea, probably ...
 26-172 1.29e-64

sarcinarray family protein; Members of this protein family are exclusive to archaea, probably all of which have S-layer surface protein arrays. All member proteins have an N-terminal signal sequence. The majority of known members belong to codirectional tandem arrays in the genus Methanosarcina (nine in M. barkeri str. Fusaro). Nearly all members have an additional 50 residues, (trimmed from the seed alignment for this model), consisting of low-complexity sequence rich in E,N,Q,T,S, and P, followed by a variant (PAF) form of the PGF-CTERM putative archaeal surface glycoprotein sorting signal. The coined name, sarcinarray family protein, evokes the predicted archaeal surface layer localization, the taxonomic bias of known members, and the tandem organization of most members.


:

Pssm-ID: 275055  Cd Length: 144  Bit Score: 196.83  E-value: 1.29e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292667282   26 FTASFSTGVLANDSYAVTEVYCNGELYPEYFTPSPVLHANESFSLAVEMTVQQASVVDVNLNQhiLDSGaSLEIQTGPCG 105
Cdd:TIGR04209   1 FLLAFVSLVSASSDYGSIDVYYNGKLLPGAEVAKPVLKIGEPFTVKINMTVYQKSTVSVKLSE--LGGG-SFEIISGPSP 77

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 292667282  106 FNSTHSREFAPNETFTYRWIIREAENTTSAPVPVEFRYSINQVNSPELTIEHSSIVVTPYITDECVE 172
Cdd:TIGR04209  78 MNIYSSRILEKNETHTFEWTVAPTDNWAGGSLPVDFHYQINDFGTPEPLVNGSFTVAYPYISNEHYE 144
 
Name Accession Description Interval E-value
sarcinarray TIGR04209
sarcinarray family protein; Members of this protein family are exclusive to archaea, probably ...
 26-172 1.29e-64

sarcinarray family protein; Members of this protein family are exclusive to archaea, probably all of which have S-layer surface protein arrays. All member proteins have an N-terminal signal sequence. The majority of known members belong to codirectional tandem arrays in the genus Methanosarcina (nine in M. barkeri str. Fusaro). Nearly all members have an additional 50 residues, (trimmed from the seed alignment for this model), consisting of low-complexity sequence rich in E,N,Q,T,S, and P, followed by a variant (PAF) form of the PGF-CTERM putative archaeal surface glycoprotein sorting signal. The coined name, sarcinarray family protein, evokes the predicted archaeal surface layer localization, the taxonomic bias of known members, and the tandem organization of most members.


Pssm-ID: 275055  Cd Length: 144  Bit Score: 196.83  E-value: 1.29e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292667282   26 FTASFSTGVLANDSYAVTEVYCNGELYPEYFTPSPVLHANESFSLAVEMTVQQASVVDVNLNQhiLDSGaSLEIQTGPCG 105
Cdd:TIGR04209   1 FLLAFVSLVSASSDYGSIDVYYNGKLLPGAEVAKPVLKIGEPFTVKINMTVYQKSTVSVKLSE--LGGG-SFEIISGPSP 77

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 292667282  106 FNSTHSREFAPNETFTYRWIIREAENTTSAPVPVEFRYSINQVNSPELTIEHSSIVVTPYITDECVE 172
Cdd:TIGR04209  78 MNIYSSRILEKNETHTFEWTVAPTDNWAGGSLPVDFHYQINDFGTPEPLVNGSFTVAYPYISNEHYE 144
 
Name Accession Description Interval E-value
sarcinarray TIGR04209
sarcinarray family protein; Members of this protein family are exclusive to archaea, probably ...
 26-172 1.29e-64

sarcinarray family protein; Members of this protein family are exclusive to archaea, probably all of which have S-layer surface protein arrays. All member proteins have an N-terminal signal sequence. The majority of known members belong to codirectional tandem arrays in the genus Methanosarcina (nine in M. barkeri str. Fusaro). Nearly all members have an additional 50 residues, (trimmed from the seed alignment for this model), consisting of low-complexity sequence rich in E,N,Q,T,S, and P, followed by a variant (PAF) form of the PGF-CTERM putative archaeal surface glycoprotein sorting signal. The coined name, sarcinarray family protein, evokes the predicted archaeal surface layer localization, the taxonomic bias of known members, and the tandem organization of most members.


Pssm-ID: 275055  Cd Length: 144  Bit Score: 196.83  E-value: 1.29e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292667282   26 FTASFSTGVLANDSYAVTEVYCNGELYPEYFTPSPVLHANESFSLAVEMTVQQASVVDVNLNQhiLDSGaSLEIQTGPCG 105
Cdd:TIGR04209   1 FLLAFVSLVSASSDYGSIDVYYNGKLLPGAEVAKPVLKIGEPFTVKINMTVYQKSTVSVKLSE--LGGG-SFEIISGPSP 77

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 292667282  106 FNSTHSREFAPNETFTYRWIIREAENTTSAPVPVEFRYSINQVNSPELTIEHSSIVVTPYITDECVE 172
Cdd:TIGR04209  78 MNIYSSRILEKNETHTFEWTVAPTDNWAGGSLPVDFHYQINDFGTPEPLVNGSFTVAYPYISNEHYE 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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