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Conserved domains on  [gi|294474375|gb|ADE83764|]
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conserved hypothetical protein [Prevotella ruminicola 23]

Protein Classification

DUF1573 domain-containing protein( domain architecture ID 18226388)

DUF1573 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1573 pfam07610
Protein of unknown function (DUF1573); These hypothetical proteins, from bacteria such as ...
 26-121 7.04e-34

Protein of unknown function (DUF1573); These hypothetical proteins, from bacteria such as Rhodopirellula baltica, Bacteroides thetaiotaomicron, and Porphyromonas gingivalis, share a region of conserved sequence towards their N-termini.


:

Pssm-ID: 429559  Cd Length: 98  Bit Score: 120.70  E-value: 7.04e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294474375   26 LTVKTTTIDVGATGYEQPVTATFEMRNKGLRRLVIQSVKPDCGCTKIEYPKE-VGIGERFTIKMTYDARM-LGHFQKMCL 103
Cdd:pfam07610   1 ITFEETTIDFGTIEEGGPVTHTFTFTNTGKAPLVITDVRTSCGCTTPEWPKEpIAPGETGKIKVTFDAKGrPGHFNKTIT 80

                          90
                  ....*....|....*...
gi 294474375  104 VKSNASKKPFYLTMTGVV 121
Cdd:pfam07610  81 VYSNASPGPVTLTIKGNV 98
DUF1573 super family cl44563
Protein of unknown function (DUF1573); These hypothetical proteins, from bacteria such as ...
 263-322 2.41e-06

Protein of unknown function (DUF1573); These hypothetical proteins, from bacteria such as Rhodopirellula baltica, Bacteroides thetaiotaomicron, and Porphyromonas gingivalis, share a region of conserved sequence towards their N-termini.


The actual alignment was detected with superfamily member pfam07610:

Pssm-ID: 479786  Cd Length: 98  Bit Score: 45.59  E-value: 2.41e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 294474375  263 TDVDFTDFGGKTKKTATVTLQNTGVSPLKITSLQLFTAGLKVTLSKSEIAPGQSANLKIT 322
Cdd:pfam07610   6 TTIDFGTIEEGGPVTHTFTFTNTGKAPLVITDVRTSCGCTTPEWPKEPIAPGETGKIKVT 65
 
Name Accession Description Interval E-value
DUF1573 pfam07610
Protein of unknown function (DUF1573); These hypothetical proteins, from bacteria such as ...
 26-121 7.04e-34

Protein of unknown function (DUF1573); These hypothetical proteins, from bacteria such as Rhodopirellula baltica, Bacteroides thetaiotaomicron, and Porphyromonas gingivalis, share a region of conserved sequence towards their N-termini.


Pssm-ID: 429559  Cd Length: 98  Bit Score: 120.70  E-value: 7.04e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294474375   26 LTVKTTTIDVGATGYEQPVTATFEMRNKGLRRLVIQSVKPDCGCTKIEYPKE-VGIGERFTIKMTYDARM-LGHFQKMCL 103
Cdd:pfam07610   1 ITFEETTIDFGTIEEGGPVTHTFTFTNTGKAPLVITDVRTSCGCTTPEWPKEpIAPGETGKIKVTFDAKGrPGHFNKTIT 80

                          90
                  ....*....|....*...
gi 294474375  104 VKSNASKKPFYLTMTGVV 121
Cdd:pfam07610  81 VYSNASPGPVTLTIKGNV 98
OS_HP2_seleno NF041425
OS_HP2 family (seleno)domain; Members of this family contain a branch of the DUF1573 (PF07610) ...
 42-122 1.12e-09

OS_HP2 family (seleno)domain; Members of this family contain a branch of the DUF1573 (PF07610) domain. A majority are selenoproteins, with a UGC motif.


Pssm-ID: 469316  Cd Length: 98  Bit Score: 54.78  E-value: 1.12e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294474375  42 QPVTATFEMRNKGLRRLVIQSVKPDCGCTKIEYPKEVGIGERFTIKMTYDARMLG--HFQKMCLVKSNASKKP-FYLTMT 118
Cdd:NF041425  15 TEVTHDFIIQNKGDAPLEIEKVKTGUGCTAVSYPRQIPPGGEGKITIKVDTNGYGgrKLKKTITVYTNDPKNPrLTLTIS 94


                 ....
gi 294474375 119 GVVK 122
Cdd:NF041425  95 GKVE 98
DUF1573 pfam07610
Protein of unknown function (DUF1573); These hypothetical proteins, from bacteria such as ...
 263-322 2.41e-06

Protein of unknown function (DUF1573); These hypothetical proteins, from bacteria such as Rhodopirellula baltica, Bacteroides thetaiotaomicron, and Porphyromonas gingivalis, share a region of conserved sequence towards their N-termini.


Pssm-ID: 429559  Cd Length: 98  Bit Score: 45.59  E-value: 2.41e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 294474375  263 TDVDFTDFGGKTKKTATVTLQNTGVSPLKITSLQLFTAGLKVTLSKSEIAPGQSANLKIT 322
Cdd:pfam07610   6 TTIDFGTIEEGGPVTHTFTFTNTGKAPLVITDVRTSCGCTTPEWPKEPIAPGETGKIKVT 65
choice_anch_D NF012200
choice-of-anchor D domain; This HMM describes a repeat domain just over 100 amino acids long ...
 255-322 7.97e-05

choice-of-anchor D domain; This HMM describes a repeat domain just over 100 amino acids long and usually found in tandem copies. Members appear to be extracellular proteins that have some C-terminal anchoring domain, such as type IX secrection (T9SS) or PEP-CTERM.


Pssm-ID: 467954 [Multi-domain]  Cd Length: 107  Bit Score: 41.46  E-value: 7.97e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 294474375 255 APQLQMSATDVDFTDFGGKTKKTATVTLQNTGVSPLKITSLQLF---TAGLKVTLSKSE-IAPGQSANLKIT 322
Cdd:NF012200  14 DPSITPSPASIDFGNVRVGDTASQTVTITNTGTAALTIEGLTISgtnAGDFTVSGNSPTtLAAGGSCTLTVT 85
 
Name Accession Description Interval E-value
DUF1573 pfam07610
Protein of unknown function (DUF1573); These hypothetical proteins, from bacteria such as ...
 26-121 7.04e-34

Protein of unknown function (DUF1573); These hypothetical proteins, from bacteria such as Rhodopirellula baltica, Bacteroides thetaiotaomicron, and Porphyromonas gingivalis, share a region of conserved sequence towards their N-termini.


Pssm-ID: 429559  Cd Length: 98  Bit Score: 120.70  E-value: 7.04e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294474375   26 LTVKTTTIDVGATGYEQPVTATFEMRNKGLRRLVIQSVKPDCGCTKIEYPKE-VGIGERFTIKMTYDARM-LGHFQKMCL 103
Cdd:pfam07610   1 ITFEETTIDFGTIEEGGPVTHTFTFTNTGKAPLVITDVRTSCGCTTPEWPKEpIAPGETGKIKVTFDAKGrPGHFNKTIT 80

                          90
                  ....*....|....*...
gi 294474375  104 VKSNASKKPFYLTMTGVV 121
Cdd:pfam07610  81 VYSNASPGPVTLTIKGNV 98
OS_HP2_seleno NF041425
OS_HP2 family (seleno)domain; Members of this family contain a branch of the DUF1573 (PF07610) ...
 42-122 1.12e-09

OS_HP2 family (seleno)domain; Members of this family contain a branch of the DUF1573 (PF07610) domain. A majority are selenoproteins, with a UGC motif.


Pssm-ID: 469316  Cd Length: 98  Bit Score: 54.78  E-value: 1.12e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 294474375  42 QPVTATFEMRNKGLRRLVIQSVKPDCGCTKIEYPKEVGIGERFTIKMTYDARMLG--HFQKMCLVKSNASKKP-FYLTMT 118
Cdd:NF041425  15 TEVTHDFIIQNKGDAPLEIEKVKTGUGCTAVSYPRQIPPGGEGKITIKVDTNGYGgrKLKKTITVYTNDPKNPrLTLTIS 94


                 ....
gi 294474375 119 GVVK 122
Cdd:NF041425  95 GKVE 98
DUF1573 pfam07610
Protein of unknown function (DUF1573); These hypothetical proteins, from bacteria such as ...
 263-322 2.41e-06

Protein of unknown function (DUF1573); These hypothetical proteins, from bacteria such as Rhodopirellula baltica, Bacteroides thetaiotaomicron, and Porphyromonas gingivalis, share a region of conserved sequence towards their N-termini.


Pssm-ID: 429559  Cd Length: 98  Bit Score: 45.59  E-value: 2.41e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 294474375  263 TDVDFTDFGGKTKKTATVTLQNTGVSPLKITSLQLFTAGLKVTLSKSEIAPGQSANLKIT 322
Cdd:pfam07610   6 TTIDFGTIEEGGPVTHTFTFTNTGKAPLVITDVRTSCGCTTPEWPKEPIAPGETGKIKVT 65
choice_anch_D NF012200
choice-of-anchor D domain; This HMM describes a repeat domain just over 100 amino acids long ...
 255-322 7.97e-05

choice-of-anchor D domain; This HMM describes a repeat domain just over 100 amino acids long and usually found in tandem copies. Members appear to be extracellular proteins that have some C-terminal anchoring domain, such as type IX secrection (T9SS) or PEP-CTERM.


Pssm-ID: 467954 [Multi-domain]  Cd Length: 107  Bit Score: 41.46  E-value: 7.97e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 294474375 255 APQLQMSATDVDFTDFGGKTKKTATVTLQNTGVSPLKITSLQLF---TAGLKVTLSKSE-IAPGQSANLKIT 322
Cdd:NF012200  14 DPSITPSPASIDFGNVRVGDTASQTVTITNTGTAALTIEGLTISgtnAGDFTVSGNSPTtLAAGGSCTLTVT 85
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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