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Conserved domains on  [gi|296016868|gb|ADG70106|]
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hypothetical protein Plim_4299 (plasmid) [Planctopirus limnophila DSM 3776]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Csx14_I-U super family cl14805
CRISPR/Cas system-associated protein Csx14; CRISPR (Clustered Regularly Interspaced Short ...
 60-137 1.34e-06

CRISPR/Cas system-associated protein Csx14; CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein containing C-terminal alpha-helical domain resembling Cas8a2, also known as GSU0052


The actual alignment was detected with superfamily member TIGR04106:

Pssm-ID: 276063  Cd Length: 282  Bit Score: 47.55  E-value: 1.34e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296016868   60 TWTGQMTLPKIINGMIDALKKAKDVEDIR---AFQAPMTGATGFDLRTAIE----PLDAGFSLDKLGMPIMR-RVGLELL 131
Cdd:TIGR04106 135 TWAGQQSVASIARDMLSALKSLTWDIHSAdpfLAAAPQSSSLRFDFDRDYNtqgiPLDVGFSPNDHKTVKMVgRPLVELL 214


                  ....*.
gi 296016868  132 GIIGLQ 137
Cdd:TIGR04106 215 AFVGLQ 220
 
Name Accession Description Interval E-value
cas8c_GSU0052 TIGR04106
CRISPR-associated protein GSU0052/csb3, Dpsyc system; This model describes a CRISPR-associated ...
 60-137 1.34e-06

CRISPR-associated protein GSU0052/csb3, Dpsyc system; This model describes a CRISPR-associated (cas) protein unique to the Dpsyc subtype (named for Desulfotalea psychrophila), a variant type I-C subtype, although not universal to the that subtype. Members of this family occur in CRISPR loci of Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, Rhodospirillum centenum SW, Planctomyces limnophilus DSM 3776, and Methylosinus trichosporium OB3b.


Pssm-ID: 274984  Cd Length: 282  Bit Score: 47.55  E-value: 1.34e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296016868   60 TWTGQMTLPKIINGMIDALKKAKDVEDIR---AFQAPMTGATGFDLRTAIE----PLDAGFSLDKLGMPIMR-RVGLELL 131
Cdd:TIGR04106 135 TWAGQQSVASIARDMLSALKSLTWDIHSAdpfLAAAPQSSSLRFDFDRDYNtqgiPLDVGFSPNDHKTVKMVgRPLVELL 214


                  ....*.
gi 296016868  132 GIIGLQ 137
Cdd:TIGR04106 215 AFVGLQ 220
Csx14_I-U cd09765
CRISPR/Cas system-associated protein Csx14; CRISPR (Clustered Regularly Interspaced Short ...
 46-137 5.50e-06

CRISPR/Cas system-associated protein Csx14; CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein containing C-terminal alpha-helical domain resembling Cas8a2, also known as GSU0052


Pssm-ID: 187734  Cd Length: 272  Bit Score: 45.71  E-value: 5.50e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296016868  46 IIPITWPDRVPG---LVTWTGQMTLPKIINGMIDALKKAKD----VED-IRAFQAPMTGATGFDLR--TAIEPLDAGFSL 115
Cdd:cd09765  118 RVPDWHWVDSSGvtnVKTWAGNQSVAKIANLMLSALKSVSWdihsISAhLFRFAHPQSLPFRFDWRrdGVYIPLDVGFSP 197

                         90       100
                 ....*....|....*....|...
gi 296016868 116 DKL-GMPIMRRVGLELLGIIGLQ 137
Cdd:cd09765  198 NDHkKKVRVGRPLLELLAFVGLQ 220
 
Name Accession Description Interval E-value
cas8c_GSU0052 TIGR04106
CRISPR-associated protein GSU0052/csb3, Dpsyc system; This model describes a CRISPR-associated ...
 60-137 1.34e-06

CRISPR-associated protein GSU0052/csb3, Dpsyc system; This model describes a CRISPR-associated (cas) protein unique to the Dpsyc subtype (named for Desulfotalea psychrophila), a variant type I-C subtype, although not universal to the that subtype. Members of this family occur in CRISPR loci of Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, Rhodospirillum centenum SW, Planctomyces limnophilus DSM 3776, and Methylosinus trichosporium OB3b.


Pssm-ID: 274984  Cd Length: 282  Bit Score: 47.55  E-value: 1.34e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296016868   60 TWTGQMTLPKIINGMIDALKKAKDVEDIR---AFQAPMTGATGFDLRTAIE----PLDAGFSLDKLGMPIMR-RVGLELL 131
Cdd:TIGR04106 135 TWAGQQSVASIARDMLSALKSLTWDIHSAdpfLAAAPQSSSLRFDFDRDYNtqgiPLDVGFSPNDHKTVKMVgRPLVELL 214


                  ....*.
gi 296016868  132 GIIGLQ 137
Cdd:TIGR04106 215 AFVGLQ 220
Csx14_I-U cd09765
CRISPR/Cas system-associated protein Csx14; CRISPR (Clustered Regularly Interspaced Short ...
 46-137 5.50e-06

CRISPR/Cas system-associated protein Csx14; CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein containing C-terminal alpha-helical domain resembling Cas8a2, also known as GSU0052


Pssm-ID: 187734  Cd Length: 272  Bit Score: 45.71  E-value: 5.50e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296016868  46 IIPITWPDRVPG---LVTWTGQMTLPKIINGMIDALKKAKD----VED-IRAFQAPMTGATGFDLR--TAIEPLDAGFSL 115
Cdd:cd09765  118 RVPDWHWVDSSGvtnVKTWAGNQSVAKIANLMLSALKSVSWdihsISAhLFRFAHPQSLPFRFDWRrdGVYIPLDVGFSP 197

                         90       100
                 ....*....|....*....|...
gi 296016868 116 DKL-GMPIMRRVGLELLGIIGLQ 137
Cdd:cd09765  198 NDHkKKVRVGRPLLELLAFVGLQ 220
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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