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Conserved domains on  [gi|297184536|gb|ADI20649|]
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FAD/FMN-containing dehydrogenases [uncultured gamma proteobacterium EF100_93H11]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK11230 super family cl32660
glycolate oxidase subunit GlcD; Provisional
 1-56 7.56e-24

glycolate oxidase subunit GlcD; Provisional


The actual alignment was detected with superfamily member PRK11230:

Pssm-ID: 183043 [Multi-domain]  Cd Length: 499  Bit Score: 91.76  E-value: 7.56e-24
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 297184536   1 MLGVVTEVTVRLLPKPAVARVILAAFDDLAVAGNAVAAIIGAGIIPAGLEMMDSPA 56
Cdd:PRK11230 216 MLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIAAGIIPGGLEMMDNLS 271
 
Name Accession Description Interval E-value
PRK11230 PRK11230
glycolate oxidase subunit GlcD; Provisional
 1-56 7.56e-24

glycolate oxidase subunit GlcD; Provisional


Pssm-ID: 183043 [Multi-domain]  Cd Length: 499  Bit Score: 91.76  E-value: 7.56e-24
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 297184536   1 MLGVVTEVTVRLLPKPAVARVILAAFDDLAVAGNAVAAIIGAGIIPAGLEMMDSPA 56
Cdd:PRK11230 216 MLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIAAGIIPGGLEMMDNLS 271
GlcD COG0277
FAD/FMN-containing lactate dehydrogenase/glycolate oxidase [Energy production and conversion];
2-56 1.06e-14

FAD/FMN-containing lactate dehydrogenase/glycolate oxidase [Energy production and conversion];


Pssm-ID: 440046 [Multi-domain]  Cd Length: 462  Bit Score: 65.69  E-value: 1.06e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 297184536   2 LGVVTEVTVRLLPKPAVARVILAAFDDLAVAGNAVAAIIGAGIIPAGLEMMDSPA 56
Cdd:COG0277  202 LGVITEATLRLHPLPEAVATALVAFPDLEAAAAAVRALLAAGIAPAALELMDRAA 256
FAD-oxidase_C pfam02913
FAD linked oxidases, C-terminal domain; This domain has a ferredoxin-like fold.
 15-56 8.43e-08

FAD linked oxidases, C-terminal domain; This domain has a ferredoxin-like fold.


Pssm-ID: 397178  Cd Length: 248  Bit Score: 46.15  E-value: 8.43e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 297184536   15 KPAVARVILAAFDDLAVAGNAVAAIIGAGIIPAGLEMMDSPA 56
Cdd:pfam02913   1 LPEVRAVALVGFPSFEAAVKAVREIARAGIIPAALELMDNDA 42
 
Name Accession Description Interval E-value
PRK11230 PRK11230
glycolate oxidase subunit GlcD; Provisional
 1-56 7.56e-24

glycolate oxidase subunit GlcD; Provisional


Pssm-ID: 183043 [Multi-domain]  Cd Length: 499  Bit Score: 91.76  E-value: 7.56e-24
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 297184536   1 MLGVVTEVTVRLLPKPAVARVILAAFDDLAVAGNAVAAIIGAGIIPAGLEMMDSPA 56
Cdd:PRK11230 216 MLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIAAGIIPGGLEMMDNLS 271
GlcD COG0277
FAD/FMN-containing lactate dehydrogenase/glycolate oxidase [Energy production and conversion];
2-56 1.06e-14

FAD/FMN-containing lactate dehydrogenase/glycolate oxidase [Energy production and conversion];


Pssm-ID: 440046 [Multi-domain]  Cd Length: 462  Bit Score: 65.69  E-value: 1.06e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 297184536   2 LGVVTEVTVRLLPKPAVARVILAAFDDLAVAGNAVAAIIGAGIIPAGLEMMDSPA 56
Cdd:COG0277  202 LGVITEATLRLHPLPEAVATALVAFPDLEAAAAAVRALLAAGIAPAALELMDRAA 256
FAD-oxidase_C pfam02913
FAD linked oxidases, C-terminal domain; This domain has a ferredoxin-like fold.
 15-56 8.43e-08

FAD linked oxidases, C-terminal domain; This domain has a ferredoxin-like fold.


Pssm-ID: 397178  Cd Length: 248  Bit Score: 46.15  E-value: 8.43e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 297184536   15 KPAVARVILAAFDDLAVAGNAVAAIIGAGIIPAGLEMMDSPA 56
Cdd:pfam02913   1 LPEVRAVALVGFPSFEAAVKAVREIARAGIIPAALELMDNDA 42
PLN02805 PLN02805
D-lactate dehydrogenase [cytochrome]
 2-53 2.36e-03

D-lactate dehydrogenase [cytochrome]


Pssm-ID: 178402 [Multi-domain]  Cd Length: 555  Bit Score: 33.83  E-value: 2.36e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 297184536   2 LGVVTEVTVRLLPKPAVARVILAAFDDLAVAGNAVAAIIGAGIIPAGLEMMD 53
Cdd:PLN02805 294 LGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIATMLSGIQVSRVELLD 345
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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