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Conserved domains on  [gi|297747679|gb|ADI51557|]
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vitellogenin 1, partial [Melanotaenia fluviatilis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Vitellogenin_N super family cl44413
Lipoprotein amino terminal region; This family contains regions from: Vitellogenin, Microsomal ...
 1-98 1.86e-27

Lipoprotein amino terminal region; This family contains regions from: Vitellogenin, Microsomal triglyceride transfer protein and apolipoprotein B-100. These proteins are all involved in lipid transport. This family contains the LV1n chain from lipovitellin, that contains two structural domains.


The actual alignment was detected with superfamily member pfam01347:

Pssm-ID: 460170 [Multi-domain]  Cd Length: 582  Bit Score: 104.28  E-value: 1.86e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297747679    1 ILLTKTRDMNHCQERIIKDLGLAYTEKCDKCQEEYKNLRGTSSFAYTMKPVASGVMILKAHVNELIQFSPFAESNGAAQM 80
Cdd:pfam01347 157 IIVTKTKNLNNCQERVSYRYGLAYAEWCPGCNQMGKFLSRTSVSTYILKGKLKGFLIQSAETTEKVQVSPFLENNQKAKV 236

                          90
                  ....*....|....*...
gi 297747679   81 ETKQSLVLLEIAKDPIPS 98
Cdd:pfam01347 237 ESRQNLTLEEVEKTPGLI 254
 
Name Accession Description Interval E-value
Vitellogenin_N pfam01347
Lipoprotein amino terminal region; This family contains regions from: Vitellogenin, Microsomal ...
 1-98 1.86e-27

Lipoprotein amino terminal region; This family contains regions from: Vitellogenin, Microsomal triglyceride transfer protein and apolipoprotein B-100. These proteins are all involved in lipid transport. This family contains the LV1n chain from lipovitellin, that contains two structural domains.


Pssm-ID: 460170 [Multi-domain]  Cd Length: 582  Bit Score: 104.28  E-value: 1.86e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297747679    1 ILLTKTRDMNHCQERIIKDLGLAYTEKCDKCQEEYKNLRGTSSFAYTMKPVASGVMILKAHVNELIQFSPFAESNGAAQM 80
Cdd:pfam01347 157 IIVTKTKNLNNCQERVSYRYGLAYAEWCPGCNQMGKFLSRTSVSTYILKGKLKGFLIQSAETTEKVQVSPFLENNQKAKV 236

                          90
                  ....*....|....*...
gi 297747679   81 ETKQSLVLLEIAKDPIPS 98
Cdd:pfam01347 237 ESRQNLTLEEVEKTPGLI 254
LPD_N smart00638
Lipoprotein N-terminal Domain;
1-104 6.41e-24

Lipoprotein N-terminal Domain;


Pssm-ID: 214755 [Multi-domain]  Cd Length: 574  Bit Score: 94.33  E-value: 6.41e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297747679     1 ILLTKTRDMNHCQERIIKDLGL-AYTEKCDKCQEEYKNLRGTSSFAYTMKPVASGVMILKAHVNELIQFSPFAESNG-AA 78
Cdd:smart00638 155 IQVTKTKNLNNCQQREAYHFGLaAYAEKCPECTNRMGNLKSTSSVNYIIKNGKLGVLIIEAVVTEEKVVVSPNIYNGqKA 234

                           90       100
                   ....*....|....*....|....*.
gi 297747679    79 QMETKQSLVLLEIAKDPIPSISAEYR 104
Cdd:smart00638 235 IVESRQKLTLKSVKKTPSSPPPGEPR 260
 
Name Accession Description Interval E-value
Vitellogenin_N pfam01347
Lipoprotein amino terminal region; This family contains regions from: Vitellogenin, Microsomal ...
 1-98 1.86e-27

Lipoprotein amino terminal region; This family contains regions from: Vitellogenin, Microsomal triglyceride transfer protein and apolipoprotein B-100. These proteins are all involved in lipid transport. This family contains the LV1n chain from lipovitellin, that contains two structural domains.


Pssm-ID: 460170 [Multi-domain]  Cd Length: 582  Bit Score: 104.28  E-value: 1.86e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297747679    1 ILLTKTRDMNHCQERIIKDLGLAYTEKCDKCQEEYKNLRGTSSFAYTMKPVASGVMILKAHVNELIQFSPFAESNGAAQM 80
Cdd:pfam01347 157 IIVTKTKNLNNCQERVSYRYGLAYAEWCPGCNQMGKFLSRTSVSTYILKGKLKGFLIQSAETTEKVQVSPFLENNQKAKV 236

                          90
                  ....*....|....*...
gi 297747679   81 ETKQSLVLLEIAKDPIPS 98
Cdd:pfam01347 237 ESRQNLTLEEVEKTPGLI 254
LPD_N smart00638
Lipoprotein N-terminal Domain;
1-104 6.41e-24

Lipoprotein N-terminal Domain;


Pssm-ID: 214755 [Multi-domain]  Cd Length: 574  Bit Score: 94.33  E-value: 6.41e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 297747679     1 ILLTKTRDMNHCQERIIKDLGL-AYTEKCDKCQEEYKNLRGTSSFAYTMKPVASGVMILKAHVNELIQFSPFAESNG-AA 78
Cdd:smart00638 155 IQVTKTKNLNNCQQREAYHFGLaAYAEKCPECTNRMGNLKSTSSVNYIIKNGKLGVLIIEAVVTEEKVVVSPNIYNGqKA 234

                           90       100
                   ....*....|....*....|....*.
gi 297747679    79 QMETKQSLVLLEIAKDPIPSISAEYR 104
Cdd:smart00638 235 IVESRQKLTLKSVKKTPSSPPPGEPR 260
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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