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Conserved domains on  [gi|299151994|gb|ADJ18063|]
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photosystem I P700 apoprotein, partial (chloroplast) [Acacia anegadensis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
psaB super family cl08224
photosystem I P700 chlorophyll a apoprotein A2
 1-25 9.67e-12

photosystem I P700 chlorophyll a apoprotein A2


The actual alignment was detected with superfamily member CHL00054:

Pssm-ID: 471792  Cd Length: 734  Bit Score: 55.50  E-value: 9.67e-12
                         10        20
                 ....*....|....*....|....*
gi 299151994   1 LAHFSVGYIFTYAAFLIASTSGKFG 25
Cdd:CHL00054 710 LAHFSVGYIFTYAAFLIASTSGKFG 734
 
Name Accession Description Interval E-value
psaB CHL00054
photosystem I P700 chlorophyll a apoprotein A2
 1-25 9.67e-12

photosystem I P700 chlorophyll a apoprotein A2


Pssm-ID: 176995  Cd Length: 734  Bit Score: 55.50  E-value: 9.67e-12
                         10        20
                 ....*....|....*....|....*
gi 299151994   1 LAHFSVGYIFTYAAFLIASTSGKFG 25
Cdd:CHL00054 710 LAHFSVGYIFTYAAFLIASTSGKFG 734
PsaA_PsaB pfam00223
Photosystem I psaA/psaB protein;
1-18 7.02e-04

Photosystem I psaA/psaB protein;


Pssm-ID: 459719  Cd Length: 719  Bit Score: 33.21  E-value: 7.02e-04
                          10
                  ....*....|....*...
gi 299151994    1 LAHFSVGYIFTYAAFLIA 18
Cdd:pfam00223 702 VAHFLLGGIVTTWAFFIA 719
 
Name Accession Description Interval E-value
psaB CHL00054
photosystem I P700 chlorophyll a apoprotein A2
 1-25 9.67e-12

photosystem I P700 chlorophyll a apoprotein A2


Pssm-ID: 176995  Cd Length: 734  Bit Score: 55.50  E-value: 9.67e-12
                         10        20
                 ....*....|....*....|....*
gi 299151994   1 LAHFSVGYIFTYAAFLIASTSGKFG 25
Cdd:CHL00054 710 LAHFSVGYIFTYAAFLIASTSGKFG 734
PsaA_PsaB pfam00223
Photosystem I psaA/psaB protein;
1-18 7.02e-04

Photosystem I psaA/psaB protein;


Pssm-ID: 459719  Cd Length: 719  Bit Score: 33.21  E-value: 7.02e-04
                          10
                  ....*....|....*...
gi 299151994    1 LAHFSVGYIFTYAAFLIA 18
Cdd:pfam00223 702 VAHFLLGGIVTTWAFFIA 719
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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