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Conserved domains on  [gi|300365739|gb|ADK00949|]
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cytochrome oxidase subunit 1, partial (mitochondrion) [Macrocentrus sp. BBHEC272-09]

Protein Classification

heme-copper oxidase family protein( domain architecture ID 14)

heme-copper oxidase family protein may catalyze the transfer of electrons from an electron donor onto molecular oxygen

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Heme_Cu_Oxidase_I super family cl00275
Heme-copper oxidase subunit I. Heme-copper oxidases are transmembrane protein complexes in ...
 1-212 7.11e-127

Heme-copper oxidase subunit I. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which catalyze the reduction of O2 and simultaneously pump protons across the membrane. The superfamily is diverse in terms of electron donors, subunit composition, and heme types. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria. Membership in the superfamily is defined by subunit I, which contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons to the binuclear center. Only subunit I is common to the entire superfamily. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from the electron donor on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I of cytochrome c oxidase (CcO) and ubiquinol oxidase. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electron transfer occurs in two segments: from the electron donor to the low-spin heme, and from the low-spin heme to the binuclear center. The first segment can be a multi-step process and varies among the different families, while the second segment, a direct transfer, is consistent throughout the superfamily.


The actual alignment was detected with superfamily member MTH00153:

Pssm-ID: 469701  Cd Length: 511  Bit Score: 367.27  E-value: 7.11e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739   1 MLYFMFGMWSGMLGLSMSLIIRMELGQVGSLIGNDQIYNSFVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGSVDMAFPR 80
Cdd:MTH00153  15 TLYFIFGAWSGMVGTSLSLLIRAELGQPGSLIGDDQIYNVIVTAHAFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPR 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739  81 MNNMSFWLLIPSLMLLILSGFMNIGVGTGWTVYPPLSLNISHMGVSVDMAIFSLHLAGISSIMGAMNFIITIINMRNYGV 160
Cdd:MTH00153  95 MNNMSFWLLPPSLTLLLSSSMVESGAGTGWTVYPPLSSNIAHSGASVDLAIFSLHLAGISSILGAINFITTIINMRSKGM 174

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 300365739 161 LMDKISLLCWSILITAFLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDP 212
Cdd:MTH00153 175 TLDRMPLFVWSVLITAILLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDP 226
 
Name Accession Description Interval E-value
COX1 MTH00153
cytochrome c oxidase subunit I; Provisional
 1-212 7.11e-127

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177210  Cd Length: 511  Bit Score: 367.27  E-value: 7.11e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739   1 MLYFMFGMWSGMLGLSMSLIIRMELGQVGSLIGNDQIYNSFVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGSVDMAFPR 80
Cdd:MTH00153  15 TLYFIFGAWSGMVGTSLSLLIRAELGQPGSLIGDDQIYNVIVTAHAFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPR 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739  81 MNNMSFWLLIPSLMLLILSGFMNIGVGTGWTVYPPLSLNISHMGVSVDMAIFSLHLAGISSIMGAMNFIITIINMRNYGV 160
Cdd:MTH00153  95 MNNMSFWLLPPSLTLLLSSSMVESGAGTGWTVYPPLSSNIAHSGASVDLAIFSLHLAGISSILGAINFITTIINMRSKGM 174

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 300365739 161 LMDKISLLCWSILITAFLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDP 212
Cdd:MTH00153 175 TLDRMPLFVWSVLITAILLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDP 226
Cyt_c_Oxidase_I cd01663
Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the ...
 1-212 4.23e-117

Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, may play a role in assembly or oxygen delivery to the active site. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme (heme a3) and a copper ion (CuB). It also contains a low-spin heme (heme a), believed to participate in the transfer of electrons to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from cytochrome c on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are transferred from cytochrome c (the electron donor) to heme a via the CuA binuclear site in subunit II, and directly from heme a to the binuclear center.


Pssm-ID: 238833  Cd Length: 488  Bit Score: 341.77  E-value: 4.23e-117
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739   1 MLYFMFGMWSGMLGLSMSLIIRMELGQVGSLIGNDQIYNSFVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGSVDMAFPR 80
Cdd:cd01663    8 TLYLIFGLWSGLVGTSLSLLIRLELSQPGSQLGNDQLYNVIVTAHALIMIFFMVMPALIGGFGNWLVPLMIGAPDMAFPR 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739  81 MNNMSFWLLIPSLMLLILSGFMNIGVGTGWTVYPPLSLNISHMGVSVDMAIFSLHLAGISSIMGAMNFIITIINMRNYGV 160
Cdd:cd01663   88 LNNLSFWLLPPSLLLLLLSALVEGGAGTGWTVYPPLSSILAHSGPSVDLAIFSLHLAGISSILGAINFITTIFNMRAPGM 167

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 300365739 161 LMDKISLLCWSILITAFLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDP 212
Cdd:cd01663  168 TLEKMPLFVWSVLITAFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDP 219
CyoB COG0843
Heme/copper-type cytochrome/quinol oxidase, subunit 1 [Energy production and conversion];
1-212 4.21e-59

Heme/copper-type cytochrome/quinol oxidase, subunit 1 [Energy production and conversion];


Pssm-ID: 440605  Cd Length: 535  Bit Score: 193.81  E-value: 4.21e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739   1 MLYFMFGMWSGMLGLSMSLIIRMELGQVGSLIGNDQIYNSFVTAHAFIMIFFMVMPiMIGGFGNWLIPLMLGSVDMAFPR 80
Cdd:COG0843   20 IMYLVTAFVFLLIGGLLALLMRLQLAGPGLGLLSPETYNQLFTMHGTIMIFFFATP-FLAGFGNYLVPLQIGARDMAFPR 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739  81 MNNMSFWLLIPSLMLLILSGFMNIGVGTGWTVYPPLSLNISHMGVSVDMAIFSLHLAGISSIMGAMNFIITIINMRNYGV 160
Cdd:COG0843   99 LNALSFWLYLFGGLLLLISLFVGGAADVGWTFYPPLSGLEASPGVGVDLWLLGLALFGVGSILGGVNFIVTILKMRAPGM 178

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 300365739 161 LMDKISLLCWSILITAFLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDP 212
Cdd:COG0843  179 TLMRMPLFTWAALVTSILILLAFPVLAAALLLLLLDRSLGTHFFDPAGGGDP 230
COX1 pfam00115
Cytochrome C and Quinol oxidase polypeptide I; Cytochrome c oxidase (E.C:7.1.1.9) is a key ...
 1-207 1.26e-32

Cytochrome C and Quinol oxidase polypeptide I; Cytochrome c oxidase (E.C:7.1.1.9) is a key enzyme in aerobic metabolism. Proton pumping haem-copper oxidases represent the terminal, energy-transfer enzymes of respiratory chains in prokaryotes and eukaryotes. The CuB-haem a3 (or haem o) binuclear centre, associated with the largest subunit I of cytochrome c and ubiquinol oxidases (E.C:1.10.3.11), is directly involved in the coupling between dioxygen reduction and proton pumping. Some terminal oxidases generate a transmembrane proton gradient across the plasma membrane (prokaryotes) or the mitochondrial inner membrane (eukaryotes). The enzyme complex consists of 3-4 subunits (prokaryotes) up to 13 polypeptides (mammals) of which only the catalytic subunit (equivalent to mammalian subunit I (COXI) is found in all haem-copper respiratory oxidases. The presence of a bimetallic centre (formed by a high-spin haem and copper B) as well as a low-spin haem, both ligated to six conserved histidine residues near the outer side of four transmembrane spans within CO I is common to all family members.


Pssm-ID: 459678  Cd Length: 432  Bit Score: 121.91  E-value: 1.26e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739    1 MLYFMFGMWSGMLGLSMSLIIRMELGQVGSLIGNDQIYNSFVTAHAFIMIFFMVMPiMIGGFGNWLIPLMLGSVDMAFPR 80
Cdd:pfam00115   4 LLYLVTALVWFLVGGLLGLLIRLQLAFPGLNFLSPLTYNQLRTLHGNLMIFWFATP-FLFGFGNYLVPLMIGARDMAFPR 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739   81 MNNMSFWLLIPSLMLLILSGfmnIGVGTGWTVYPPLslnishmgVSVDMAIFSLHLAGISSIMGAMNFIITIINMRNYGV 160
Cdd:pfam00115  83 LNALSFWLVVLGAVLLLASF---GGATTGWTEYPPL--------VGVDLWYIGLLLAGVSSLLGAINFIVTILKRRAPGM 151

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 300365739  161 LMdKISLLCWSILITAFLLLLSLPVLAGAITMLLTDRNLNTSFFDPA 207
Cdd:pfam00115 152 TL-RMPLFVWAILATAILILLAFPVLAAALLLLLLDRSLGAGGGDPL 197
 
Name Accession Description Interval E-value
COX1 MTH00153
cytochrome c oxidase subunit I; Provisional
 1-212 7.11e-127

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177210  Cd Length: 511  Bit Score: 367.27  E-value: 7.11e-127
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739   1 MLYFMFGMWSGMLGLSMSLIIRMELGQVGSLIGNDQIYNSFVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGSVDMAFPR 80
Cdd:MTH00153  15 TLYFIFGAWSGMVGTSLSLLIRAELGQPGSLIGDDQIYNVIVTAHAFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPR 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739  81 MNNMSFWLLIPSLMLLILSGFMNIGVGTGWTVYPPLSLNISHMGVSVDMAIFSLHLAGISSIMGAMNFIITIINMRNYGV 160
Cdd:MTH00153  95 MNNMSFWLLPPSLTLLLSSSMVESGAGTGWTVYPPLSSNIAHSGASVDLAIFSLHLAGISSILGAINFITTIINMRSKGM 174

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 300365739 161 LMDKISLLCWSILITAFLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDP 212
Cdd:MTH00153 175 TLDRMPLFVWSVLITAILLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDP 226
Cyt_c_Oxidase_I cd01663
Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the ...
 1-212 4.23e-117

Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, may play a role in assembly or oxygen delivery to the active site. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme (heme a3) and a copper ion (CuB). It also contains a low-spin heme (heme a), believed to participate in the transfer of electrons to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from cytochrome c on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are transferred from cytochrome c (the electron donor) to heme a via the CuA binuclear site in subunit II, and directly from heme a to the binuclear center.


Pssm-ID: 238833  Cd Length: 488  Bit Score: 341.77  E-value: 4.23e-117
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739   1 MLYFMFGMWSGMLGLSMSLIIRMELGQVGSLIGNDQIYNSFVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGSVDMAFPR 80
Cdd:cd01663    8 TLYLIFGLWSGLVGTSLSLLIRLELSQPGSQLGNDQLYNVIVTAHALIMIFFMVMPALIGGFGNWLVPLMIGAPDMAFPR 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739  81 MNNMSFWLLIPSLMLLILSGFMNIGVGTGWTVYPPLSLNISHMGVSVDMAIFSLHLAGISSIMGAMNFIITIINMRNYGV 160
Cdd:cd01663   88 LNNLSFWLLPPSLLLLLLSALVEGGAGTGWTVYPPLSSILAHSGPSVDLAIFSLHLAGISSILGAINFITTIFNMRAPGM 167

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 300365739 161 LMDKISLLCWSILITAFLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDP 212
Cdd:cd01663  168 TLEKMPLFVWSVLITAFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDP 219
COX1 MTH00167
cytochrome c oxidase subunit I; Provisional
 2-212 1.94e-111

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177222  Cd Length: 512  Bit Score: 328.17  E-value: 1.94e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739   2 LYFMFGMWSGMLGLSMSLIIRMELGQVGSLIGNDQIYNSFVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGSVDMAFPRM 81
Cdd:MTH00167  18 LYFIFGAWAGMVGTALSLLIRAELSQPGSLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRM 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739  82 NNMSFWLLIPSLMLLILSGFMNIGVGTGWTVYPPLSLNISHMGVSVDMAIFSLHLAGISSIMGAMNFIITIINMRNYGVL 161
Cdd:MTH00167  98 NNMSFWLLPPSLLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLAIFSLHLAGVSSILGSINFITTIINMKPPGIT 177

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 300365739 162 MDKISLLCWSILITAFLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDP 212
Cdd:MTH00167 178 QYQTPLFVWSILVTTILLLLSLPVLAAAITMLLTDRNLNTTFFDPAGGGDP 228
COX1 MTH00223
cytochrome c oxidase subunit I; Provisional
 2-212 1.21e-105

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177260  Cd Length: 512  Bit Score: 313.45  E-value: 1.21e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739   2 LYFMFGMWSGMLGLSMSLIIRMELGQVGSLIGNDQIYNSFVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGSVDMAFPRM 81
Cdd:MTH00223  15 LYLIFGMWSGLVGTSLSLLIRAELGQPGALLGDDQLYNVIVTAHAFVMIFFLVMPMMIGGFGNWLVPLMLGAPDMAFPRL 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739  82 NNMSFWLLIPSLMLLILSGFMNIGVGTGWTVYPPLSLNISHMGVSVDMAIFSLHLAGISSIMGAMNFIITIINMRNYGVL 161
Cdd:MTH00223  95 NNMSFWLLPPSLYLLLSSSAVESGVGTGWTVYPPLSSNLAHAGPSVDLAIFSLHLAGVSSILGAINFITTIINMRSPGMQ 174

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 300365739 162 MDKISLLCWSILITAFLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDP 212
Cdd:MTH00223 175 LERLPLFVWSVKVTAFLLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDP 225
COX1 MTH00116
cytochrome c oxidase subunit I; Provisional
 2-212 1.15e-104

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177177  Cd Length: 515  Bit Score: 310.87  E-value: 1.15e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739   2 LYFMFGMWSGMLGLSMSLIIRMELGQVGSLIGNDQIYNSFVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGSVDMAFPRM 81
Cdd:MTH00116  18 LYLIFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRM 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739  82 NNMSFWLLIPSLMLLILSGFMNIGVGTGWTVYPPLSLNISHMGVSVDMAIFSLHLAGISSIMGAMNFIITIINMRNYGVL 161
Cdd:MTH00116  98 NNMSFWLLPPSFLLLLASSTVEAGAGTGWTVYPPLAGNLAHAGASVDLAIFSLHLAGVSSILGAINFITTCINMKPPAMS 177

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 300365739 162 MDKISLLCWSILITAFLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDP 212
Cdd:MTH00116 178 QYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDP 228
COX1 MTH00142
cytochrome c oxidase subunit I; Provisional
 2-212 1.26e-102

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 214431  Cd Length: 511  Bit Score: 305.49  E-value: 1.26e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739   2 LYFMFGMWSGMLGLSMSLIIRMELGQVGSLIGNDQIYNSFVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGSVDMAFPRM 81
Cdd:MTH00142  16 LYFLFGAWAGMVGTGLSLLIRAELGQPGSLLGDDQLYNVIVTAHAFVMIFFMVMPVMIGGFGNWLVPLMLGAPDMAFPRM 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739  82 NNMSFWLLIPSLMLLILSGFMNIGVGTGWTVYPPLSLNISHMGVSVDMAIFSLHLAGISSIMGAMNFIITIINMRNYGVL 161
Cdd:MTH00142  96 NNMSFWLLPPALLLLLSSAAVESGAGTGWTVYPPLSSNLAHSGGSVDLAIFSLHLAGVSSILGAINFITTVINMRAGGMK 175

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 300365739 162 MDKISLLCWSILITAFLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDP 212
Cdd:MTH00142 176 FERVPLFVWSVKITAILLLLSLPVLAGAITMLLTDRNFNTSFFDPAGGGDP 226
COX1 MTH00007
cytochrome c oxidase subunit I; Validated
 2-212 4.22e-95

cytochrome c oxidase subunit I; Validated


Pssm-ID: 133649  Cd Length: 511  Bit Score: 286.41  E-value: 4.22e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739   2 LYFMFGMWSGMLGLSMSLIIRMELGQVGSLIGNDQIYNSFVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGSVDMAFPRM 81
Cdd:MTH00007  15 LYFILGVWGGLLGTSMSLLIRIELGQPGAFLGSDQLYNTIVTAHAFLMIFFLVMPVFIGGFGNWLVPLMLGAPDMAFPRL 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739  82 NNMSFWLLIPSLMLLILSGFMNIGVGTGWTVYPPLSLNISHMGVSVDMAIFSLHLAGISSIMGAMNFIITIINMRNYGVL 161
Cdd:MTH00007  95 NNMSFWLLPPALILLVSSAAVEKGVGTGWTVYPPLASNLAHAGPSVDLAIFSLHLAGVSSILGAINFITTVINMRWKGLR 174

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 300365739 162 MDKISLLCWSILITAFLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDP 212
Cdd:MTH00007 175 LERIPLFVWAVVITVVLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDP 225
COX1 MTH00037
cytochrome c oxidase subunit I; Provisional
 2-212 5.45e-95

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177112  Cd Length: 517  Bit Score: 286.34  E-value: 5.45e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739   2 LYFMFGMWSGMLGLSMSLIIRMELGQVGSLIGNDQIYNSFVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGSVDMAFPRM 81
Cdd:MTH00037  18 LYLIFGAWAGMVGTAMSVIIRTELAQPGSLLQDDQIYNVIVTAHALVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRM 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739  82 NNMSFWLLIPSLMLLILSGFMNIGVGTGWTVYPPLSLNISHMGVSVDMAIFSLHLAGISSIMGAMNFIITIINMRNYGVL 161
Cdd:MTH00037  98 NNMSFWLIPPSFLLLLASAGVESGAGTGWTIYPPLSSNIAHAGGSVDLAIFSLHLAGASSILASINFITTIINMRTPGMT 177

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 300365739 162 MDKISLLCWSILITAFLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDP 212
Cdd:MTH00037 178 FDRLPLFVWSVFITAFLLLLSLPVLAGAITMLLTDRNINTTFFDPAGGGDP 228
COX1 MTH00103
cytochrome c oxidase subunit I; Validated
 2-212 5.91e-92

cytochrome c oxidase subunit I; Validated


Pssm-ID: 177165  Cd Length: 513  Bit Score: 278.30  E-value: 5.91e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739   2 LYFMFGMWSGMLGLSMSLIIRMELGQVGSLIGNDQIYNSFVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGSVDMAFPRM 81
Cdd:MTH00103  18 LYLLFGAWAGMVGTALSLLIRAELGQPGTLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRM 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739  82 NNMSFWLLIPSLMLLILSGFMNIGVGTGWTVYPPLSLNISHMGVSVDMAIFSLHLAGISSIMGAMNFIITIINMRNYGVL 161
Cdd:MTH00103  98 NNMSFWLLPPSFLLLLASSMVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMS 177

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 300365739 162 MDKISLLCWSILITAFLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDP 212
Cdd:MTH00103 178 QYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDP 228
COX1 MTH00183
cytochrome c oxidase subunit I; Provisional
 2-212 1.31e-91

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177234  Cd Length: 516  Bit Score: 277.57  E-value: 1.31e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739   2 LYFMFGMWSGMLGLSMSLIIRMELGQVGSLIGNDQIYNSFVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGSVDMAFPRM 81
Cdd:MTH00183  18 LYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRM 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739  82 NNMSFWLLIPSLMLLILSGFMNIGVGTGWTVYPPLSLNISHMGVSVDMAIFSLHLAGISSIMGAMNFIITIINMRNYGVL 161
Cdd:MTH00183  98 NNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAIS 177

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 300365739 162 MDKISLLCWSILITAFLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDP 212
Cdd:MTH00183 178 QYQTPLFVWAVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDP 228
COX1 MTH00077
cytochrome c oxidase subunit I; Provisional
 2-212 1.19e-90

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 214419  Cd Length: 514  Bit Score: 274.90  E-value: 1.19e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739   2 LYFMFGMWSGMLGLSMSLIIRMELGQVGSLIGNDQIYNSFVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGSVDMAFPRM 81
Cdd:MTH00077  18 LYLVFGAWAGMVGTALSLLIRAELSQPGTLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRM 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739  82 NNMSFWLLIPSLMLLILSGFMNIGVGTGWTVYPPLSLNISHMGVSVDMAIFSLHLAGISSIMGAMNFIITIINMRNYGVL 161
Cdd:MTH00077  98 NNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTSINMKPPSMS 177

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 300365739 162 MDKISLLCWSILITAFLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDP 212
Cdd:MTH00077 178 QYQTPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDP 228
COX1 MTH00184
cytochrome c oxidase subunit I; Provisional
 2-212 4.39e-87

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177235  Cd Length: 519  Bit Score: 265.92  E-value: 4.39e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739   2 LYFMFGMWSGMLGLSMSLIIRMELGQVGSLIGNDQIYNSFVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGSVDMAFPRM 81
Cdd:MTH00184  20 LYLLFGAFAGMIGTAFSMLIRLELSAPGSMLGDDHLYNVIVTAHAFVMIFFLVMPVMIGGFGNWFVPLYIGAPDMAFPRL 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739  82 NNMSFWLLIPSLMLLILSGFMNIGVGTGWTVYPPLSLNISHMGVSVDMAIFSLHLAGISSIMGAMNFIITIINMRNYGVL 161
Cdd:MTH00184 100 NNISFWLLPPALTLLLGSAFVEQGAGTGWTVYPPLSSIQAHSGGSVDMAIFSLHLAGISSILGAMNFITTIFNMRAPGIT 179

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 300365739 162 MDKISLLCWSILITAFLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDP 212
Cdd:MTH00184 180 MDRMPLFVWSILVTTFLLLLSLPVLAGAITMLLTDRNFNTTFFDPAGGGDP 230
COX1 MTH00182
cytochrome c oxidase subunit I; Provisional
 2-212 1.27e-86

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 214451  Cd Length: 525  Bit Score: 265.15  E-value: 1.27e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739   2 LYFMFGMWSGMLGLSMSLIIRMELGQVGSLIGNDQIYNSFVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGSVDMAFPRM 81
Cdd:MTH00182  20 LYLVFGAGAGMIGTAFSMLIRLELSAPGAMLGDDHLYNVIVTAHAFIMIFFLVMPVMIGGFGNWLVPLYIGAPDMAFPRL 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739  82 NNMSFWLLIPSLMLLILSGFMNIGVGTGWTVYPPLSLNISHMGVSVDMAIFSLHLAGISSIMGAMNFIITIINMRNYGVL 161
Cdd:MTH00182 100 NNISFWLLPPALILLLGSAFVEQGAGTGWTVYPPLSSIQAHSGGAVDMAIFSLHLAGVSSILGAINFITTIFNMRAPGVT 179

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 300365739 162 MDKISLLCWSILITAFLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDP 212
Cdd:MTH00182 180 FNRLPLFVWSILITAFLLLLSLPVLAGAITMLLTDRNFNTTFFDPAGGGDP 230
COX1 MTH00079
cytochrome c oxidase subunit I; Provisional
 2-212 5.83e-83

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177148  Cd Length: 508  Bit Score: 254.99  E-value: 5.83e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739   2 LYFMFGMWSGMLGLSMSLIIRMELGQVGSLIGNDQIYNSFVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGSVDMAFPRM 81
Cdd:MTH00079  19 LYFLFGLWSGMVGTSLSLIIRLELSKPGLLLGNGQLYNSVITAHAILMIFFMVMPSMIGGFGNWMLPLMLGAPDMSFPRL 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739  82 NNMSFWLLIPSLMLLILSGFMNIGVGTGWTVYPPLSlNISHMGVSVDMAIFSLHLAGISSIMGAMNFIITIINMRNYGVL 161
Cdd:MTH00079  99 NNLSFWLLPTSLFLILDSCFVDMGPGTSWTVYPPLS-TLGHPGSSVDLAIFSLHCAGISSILGGINFMVTTKNLRSSSIS 177

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 300365739 162 MDKISLLCWSILITAFLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDP 212
Cdd:MTH00079 178 LEHMSLFVWTVFVTVFLLVLSLPVLAGAITMLLTDRNLNTSFFDPSTGGNP 228
COX1 MTH00026
cytochrome c oxidase subunit I; Provisional
 2-212 1.67e-76

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 164599  Cd Length: 534  Bit Score: 239.14  E-value: 1.67e-76
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739   2 LYFMFGMWSGMLGLSMSLIIRMELGQVGSLIGNDQIYNSFVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGSVDMAFPRM 81
Cdd:MTH00026  19 LYLVFGALSGAIGTAFSMLIRLELSSPGSMLGDDHLYNVIVTAHAFVMIFFLVMPTMIGGFGNWFVPLMIGAPDMAFPRL 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739  82 NNMSFWLLIPSLMLLILSGFMNIGVGTGWTVYPPLSLNISHMGVSVDMAIFSLHLAGISSIMGAMNFIITIINMRNYGVL 161
Cdd:MTH00026  99 NNISFWLLPPALFLLLGSSLVEQGAGTGWTVYPPLASIQAHSGGSVDMAIFSLHLAGLSSILGAMNFITTVMNMRTPGMT 178

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 300365739 162 MDKISLLCWSILITAFLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDP 212
Cdd:MTH00026 179 MSRIPLFVWSVFITAILLLLSLPVLAGAITMLLTDRNFNTTFFDPAGGGDP 229
Heme_Cu_Oxidase_I cd00919
Heme-copper oxidase subunit I. Heme-copper oxidases are transmembrane protein complexes in ...
 1-212 3.10e-68

Heme-copper oxidase subunit I. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which catalyze the reduction of O2 and simultaneously pump protons across the membrane. The superfamily is diverse in terms of electron donors, subunit composition, and heme types. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria. Membership in the superfamily is defined by subunit I, which contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons to the binuclear center. Only subunit I is common to the entire superfamily. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from the electron donor on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I of cytochrome c oxidase (CcO) and ubiquinol oxidase. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electron transfer occurs in two segments: from the electron donor to the low-spin heme, and from the low-spin heme to the binuclear center. The first segment can be a multi-step process and varies among the different families, while the second segment, a direct transfer, is consistent throughout the superfamily.


Pssm-ID: 238461  Cd Length: 463  Bit Score: 215.86  E-value: 3.10e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739   1 MLYFMFGMWSGMLGLSMSLIIRMELGQVGSLIGNDQIYNSFVTAHAFIMIFFMVMPIMIGGFGNWLIPlMLGSVDMAFPR 80
Cdd:cd00919    6 LLYLIFAFVALLLGGLLALLIRLELATPGSLFLDPQLYNQLVTAHGVIMIFFFVMPAIFGGFGNLLPP-LIGARDLAFPR 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739  81 MNNMSFWLLIPSLMLLILSGFMNIGVGTGWTVYPPLSLNISHMGVSVDMAIFSLHLAGISSIMGAMNFIITIINMRNYGV 160
Cdd:cd00919   85 LNNLSFWLFPPGLLLLLSSVLVGGGAGTGWTFYPPLSTLSYSSGVGVDLAILGLHLAGVSSILGAINFITTILNMRAPGM 164

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 300365739 161 LMDKISLLCWSILITAFLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDP 212
Cdd:cd00919  165 TLDKMPLFVWSVLVTAILLLLALPVLAAALVMLLLDRNFGTSFFDPAGGGDP 216
COX1 MTH00048
cytochrome c oxidase subunit I; Provisional
 1-212 5.24e-60

cytochrome c oxidase subunit I; Provisional


Pssm-ID: 177123  Cd Length: 511  Bit Score: 195.67  E-value: 5.24e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739   1 MLYFMFGMWSGMLGLSMSLIIRMELGQVGSLIGNDQIYNSFVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGSVDMAFPR 80
Cdd:MTH00048  18 VIYTLLGVWSGFVGLSLSLLIRLNFLDPYYNVISLDVYNFLITNHGIIMIFFFLMPVLIGGFGNYLLPLLLGLSDLNLPR 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739  81 MNNMSFWLLIPSLMLLILSgfMNIGVGTGWTVYPPLSLNISHMGVSVDMAIFSLHLAGISSIMGAMNFIITIINMRnYGV 160
Cdd:MTH00048  98 LNALSAWLLVPSIVFLLLS--MCLGAGVGWTFYPPLSSSLFSSSWGVDFLMFSLHLAGVSSLFGSINFICTIYSAF-MTN 174

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 300365739 161 LMDKISLLCWSILITAFLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDP 212
Cdd:MTH00048 175 VFSRTSIILWSYLFTSILLLLSLPVLAAAITMLLFDRNFGSAFFDPLGGGDP 226
CyoB COG0843
Heme/copper-type cytochrome/quinol oxidase, subunit 1 [Energy production and conversion];
1-212 4.21e-59

Heme/copper-type cytochrome/quinol oxidase, subunit 1 [Energy production and conversion];


Pssm-ID: 440605  Cd Length: 535  Bit Score: 193.81  E-value: 4.21e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739   1 MLYFMFGMWSGMLGLSMSLIIRMELGQVGSLIGNDQIYNSFVTAHAFIMIFFMVMPiMIGGFGNWLIPLMLGSVDMAFPR 80
Cdd:COG0843   20 IMYLVTAFVFLLIGGLLALLMRLQLAGPGLGLLSPETYNQLFTMHGTIMIFFFATP-FLAGFGNYLVPLQIGARDMAFPR 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739  81 MNNMSFWLLIPSLMLLILSGFMNIGVGTGWTVYPPLSLNISHMGVSVDMAIFSLHLAGISSIMGAMNFIITIINMRNYGV 160
Cdd:COG0843   99 LNALSFWLYLFGGLLLLISLFVGGAADVGWTFYPPLSGLEASPGVGVDLWLLGLALFGVGSILGGVNFIVTILKMRAPGM 178

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 300365739 161 LMDKISLLCWSILITAFLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDP 212
Cdd:COG0843  179 TLMRMPLFTWAALVTSILILLAFPVLAAALLLLLLDRSLGTHFFDPAGGGDP 230
Ubiquinol_Oxidase_I cd01662
Ubiquinol oxidase subunit I. Ubiquinol oxidase, the terminal oxidase in the respiratory ...
 13-212 9.14e-46

Ubiquinol oxidase subunit I. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits in ubiquinol oxidase varies from two to five. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme and a copper ion. It also contains a low-spin heme, believed to participate in the transfer of electrons from ubiquinol to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from ubiquinol on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. It is generally believed that the channels contain water molecules that act as 'proton wires' to transfer the protons. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are believed to be transferred directly from ubiquinol (the electron donor) to the low-spin heme, and directly from the low-spin heme to the binuclear center.


Pssm-ID: 238832  Cd Length: 501  Bit Score: 158.13  E-value: 9.14e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739  13 LGLSMSLIIRMELGQ-VGSLIGNDQiYNSFVTAHAFIMIFFMVMPIMIGgFGNWLIPLMLGSVDMAFPRMNNMSFWLLIP 91
Cdd:cd01662   24 RGGVDALLMRTQLALpGNDFLSPEH-YNQIFTMHGTIMIFLFAMPLVFG-LMNYLVPLQIGARDVAFPRLNALSFWLFLF 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739  92 SLMLLILSGFMNIGVGTGWTVYPPLSLNISHMGVSVDMAIFSLHLAGISSIMGAMNFIITIINMRNYGVLMDKISLLCWS 171
Cdd:cd01662  102 GGLLLNASLLIGGFPDAGWFAYPPLSGLEYSPGVGVDYWILGLQFSGIGTLLGAINFIVTILKMRAPGMTLMRMPIFTWT 181

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 300365739 172 ILITAFLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDP 212
Cdd:cd01662  182 TLVTSILILFAFPVLTAALALLELDRYFGTHFFTNALGGNP 222
COX1 pfam00115
Cytochrome C and Quinol oxidase polypeptide I; Cytochrome c oxidase (E.C:7.1.1.9) is a key ...
 1-207 1.26e-32

Cytochrome C and Quinol oxidase polypeptide I; Cytochrome c oxidase (E.C:7.1.1.9) is a key enzyme in aerobic metabolism. Proton pumping haem-copper oxidases represent the terminal, energy-transfer enzymes of respiratory chains in prokaryotes and eukaryotes. The CuB-haem a3 (or haem o) binuclear centre, associated with the largest subunit I of cytochrome c and ubiquinol oxidases (E.C:1.10.3.11), is directly involved in the coupling between dioxygen reduction and proton pumping. Some terminal oxidases generate a transmembrane proton gradient across the plasma membrane (prokaryotes) or the mitochondrial inner membrane (eukaryotes). The enzyme complex consists of 3-4 subunits (prokaryotes) up to 13 polypeptides (mammals) of which only the catalytic subunit (equivalent to mammalian subunit I (COXI) is found in all haem-copper respiratory oxidases. The presence of a bimetallic centre (formed by a high-spin haem and copper B) as well as a low-spin haem, both ligated to six conserved histidine residues near the outer side of four transmembrane spans within CO I is common to all family members.


Pssm-ID: 459678  Cd Length: 432  Bit Score: 121.91  E-value: 1.26e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739    1 MLYFMFGMWSGMLGLSMSLIIRMELGQVGSLIGNDQIYNSFVTAHAFIMIFFMVMPiMIGGFGNWLIPLMLGSVDMAFPR 80
Cdd:pfam00115   4 LLYLVTALVWFLVGGLLGLLIRLQLAFPGLNFLSPLTYNQLRTLHGNLMIFWFATP-FLFGFGNYLVPLMIGARDMAFPR 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739   81 MNNMSFWLLIPSLMLLILSGfmnIGVGTGWTVYPPLslnishmgVSVDMAIFSLHLAGISSIMGAMNFIITIINMRNYGV 160
Cdd:pfam00115  83 LNALSFWLVVLGAVLLLASF---GGATTGWTEYPPL--------VGVDLWYIGLLLAGVSSLLGAINFIVTILKRRAPGM 151

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 300365739  161 LMdKISLLCWSILITAFLLLLSLPVLAGAITMLLTDRNLNTSFFDPA 207
Cdd:pfam00115 152 TL-RMPLFVWAILATAILILLAFPVLAAALLLLLLDRSLGAGGGDPL 197
PRK15017 PRK15017
cytochrome o ubiquinol oxidase subunit I; Provisional
 38-211 1.18e-28

cytochrome o ubiquinol oxidase subunit I; Provisional


Pssm-ID: 184978  Cd Length: 663  Bit Score: 112.34  E-value: 1.18e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739  38 YNSFVTAHAFIMIFFMVMPIMIGgFGNWLIPLMLGSVDMAFPRMNNMSFWLLIPSLMLLILSgfmnIGVG----TGWTVY 113
Cdd:PRK15017  99 YDQIFTAHGVIMIFFVAMPFVIG-LMNLVVPLQIGARDVAFPFLNNLSFWFTVVGVILVNVS----LGVGefaqTGWLAY 173

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 300365739 114 PPLSLNISHMGVSVDMAIFSLHLAGISSIMGAMNFIITIINMRNYGVLMDKISLLCWSILITAFLLLLSLPVLAGAITML 193
Cdd:PRK15017 174 PPLSGIEYSPGVGVDYWIWSLQLSGIGTTLTGINFFVTILKMRAPGMTMFKMPVFTWASLCANVLIIASFPILTVTVALL 253

                        170
                 ....*....|....*...
gi 300365739 194 LTDRNLNTSFFDPAGGGD 211
Cdd:PRK15017 254 TLDRYLGTHFFTNDMGGN 271
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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