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Conserved domains on  [gi|300491073|gb|ADK23116|]
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putative phosphomannomutase, partial [Oryza sativa]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
HAD_like super family cl21460
Haloacid Dehalogenase-like Hydrolases; The haloacid dehalogenase (HAD) superfamily includes ...
1-47 1.60e-27

Haloacid Dehalogenase-like Hydrolases; The haloacid dehalogenase (HAD) superfamily includes carbon and phosphorus hydrolases such as 2-haloalkonoate dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, among others. These proteins catalyze nucleophilic substitution reactions at phosphorus or carbon centers, using a conserved Asp carboxylate in covalent catalysis. All members possess a conserve alpha/beta core domain, and many also possess a small cap domain, with varying folds and functions.


The actual alignment was detected with superfamily member PLN02423:

Pssm-ID: 473868 [Multi-domain]  Cd Length: 245  Bit Score: 97.87  E-value: 1.60e-27
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 300491073   1 VDGTLTAPRKVVTPEMLQFMKQLREHVTVGVVGGSDLVKISEQLGKS 47
Cdd:PLN02423  14 VDGTLTAPRKEATPEMLEFMKELRKVVTVGVVGGSDLSKISEQLGKT 60
 
Name Accession Description Interval E-value
PLN02423 PLN02423
phosphomannomutase
1-47 1.60e-27

phosphomannomutase


Pssm-ID: 178043 [Multi-domain]  Cd Length: 245  Bit Score: 97.87  E-value: 1.60e-27
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 300491073   1 VDGTLTAPRKVVTPEMLQFMKQLREHVTVGVVGGSDLVKISEQLGKS 47
Cdd:PLN02423  14 VDGTLTAPRKEATPEMLEFMKELRKVVTVGVVGGSDLSKISEQLGKT 60
HAD_PMM cd02585
phosphomannomutase, similar to human PMM1 and PMM2, Saccharomyces Sec53p, and Arabidopsis ...
1-45 6.71e-19

phosphomannomutase, similar to human PMM1 and PMM2, Saccharomyces Sec53p, and Arabidopsis thaliana PMM; PMM catalyzes the interconversion of mannose-6-phosphate (M6P) to mannose-1-phosphate (M1P); the conversion of M6P to M1P is an essential step in mannose activation and the biosynthesis of glycoconjugates in all eukaryotes. M1P is the substrate for the synthesis of GDP-mannose, which is an intermediate for protein glycosylation, protein sorting and secretion, and maintaining a functional endomembrane system in eukaryotic cells. Proteins in this family contains a conserved phosphorylated motif DxDx(T/V) shared with some other phosphotransferases. This family contains two human homologs, PMM1 and PMM2; PMM2 deficiency causes congenital disorder of glycosylation type I-a, also known as Jaeken syndrome. PMM1 can also act as glucose-1,6-bisphosphatase in the brain after stimulation with inosine monophosphate; PMM2 on the other hand, is insensitive to IMP and demonstrates low glucose-1,6-bisphosphatase activity. Arabidopsis thaliana PMM converted M1P into M6P and glucose-1-phosphate into glucose-6-phosphate, with the latter reaction being less efficient. Arabidopsis thaliana and Nicotiana benthamian PPMs are involved in ascorbic acid biosynthesis. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319784  Cd Length: 238  Bit Score: 75.39  E-value: 6.71e-19
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 300491073   1 VDGTLTAPRKVVTPEMLQFMKQLREHVTVGVVGGSDLVKISEQLG 45
Cdd:cd02585    6 VDGTLTPPRQPITPEMAEFLAELRQKVKIGVVGGSDYDKIKEQLG 50
PMM pfam03332
Eukaryotic phosphomannomutase; This enzyme EC:5.4.2.8 is involved in the synthesis of the ...
16-46 8.38e-09

Eukaryotic phosphomannomutase; This enzyme EC:5.4.2.8 is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.


Pssm-ID: 397425  Cd Length: 220  Bit Score: 48.15  E-value: 8.38e-09
                          10        20        30
                  ....*....|....*....|....*....|.
gi 300491073   16 MLQFMKQLREHVTVGVVGGSDLVKISEQLGK 46
Cdd:pfam03332   1 VKDFLQKLRKRVTIGVVGGSDLSKIQEQLGD 31
 
Name Accession Description Interval E-value
PLN02423 PLN02423
phosphomannomutase
1-47 1.60e-27

phosphomannomutase


Pssm-ID: 178043 [Multi-domain]  Cd Length: 245  Bit Score: 97.87  E-value: 1.60e-27
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 300491073   1 VDGTLTAPRKVVTPEMLQFMKQLREHVTVGVVGGSDLVKISEQLGKS 47
Cdd:PLN02423  14 VDGTLTAPRKEATPEMLEFMKELRKVVTVGVVGGSDLSKISEQLGKT 60
HAD_PMM cd02585
phosphomannomutase, similar to human PMM1 and PMM2, Saccharomyces Sec53p, and Arabidopsis ...
1-45 6.71e-19

phosphomannomutase, similar to human PMM1 and PMM2, Saccharomyces Sec53p, and Arabidopsis thaliana PMM; PMM catalyzes the interconversion of mannose-6-phosphate (M6P) to mannose-1-phosphate (M1P); the conversion of M6P to M1P is an essential step in mannose activation and the biosynthesis of glycoconjugates in all eukaryotes. M1P is the substrate for the synthesis of GDP-mannose, which is an intermediate for protein glycosylation, protein sorting and secretion, and maintaining a functional endomembrane system in eukaryotic cells. Proteins in this family contains a conserved phosphorylated motif DxDx(T/V) shared with some other phosphotransferases. This family contains two human homologs, PMM1 and PMM2; PMM2 deficiency causes congenital disorder of glycosylation type I-a, also known as Jaeken syndrome. PMM1 can also act as glucose-1,6-bisphosphatase in the brain after stimulation with inosine monophosphate; PMM2 on the other hand, is insensitive to IMP and demonstrates low glucose-1,6-bisphosphatase activity. Arabidopsis thaliana PMM converted M1P into M6P and glucose-1-phosphate into glucose-6-phosphate, with the latter reaction being less efficient. Arabidopsis thaliana and Nicotiana benthamian PPMs are involved in ascorbic acid biosynthesis. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.


Pssm-ID: 319784  Cd Length: 238  Bit Score: 75.39  E-value: 6.71e-19
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*
gi 300491073   1 VDGTLTAPRKVVTPEMLQFMKQLREHVTVGVVGGSDLVKISEQLG 45
Cdd:cd02585    6 VDGTLTPPRQPITPEMAEFLAELRQKVKIGVVGGSDYDKIKEQLG 50
PTZ00174 PTZ00174
phosphomannomutase; Provisional
1-47 8.58e-18

phosphomannomutase; Provisional


Pssm-ID: 240305  Cd Length: 247  Bit Score: 72.29  E-value: 8.58e-18
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 300491073   1 VDGTLTAPRKVVTPEMLQFMKQLRE-HVTVGVVGGSDLVKISEQLGKS 47
Cdd:PTZ00174  12 VDGTLTKPRNPITQEMKDTLAKLKSkGFKIGVVGGSDYPKIKEQLGED 59
PMM pfam03332
Eukaryotic phosphomannomutase; This enzyme EC:5.4.2.8 is involved in the synthesis of the ...
16-46 8.38e-09

Eukaryotic phosphomannomutase; This enzyme EC:5.4.2.8 is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.


Pssm-ID: 397425  Cd Length: 220  Bit Score: 48.15  E-value: 8.38e-09
                          10        20        30
                  ....*....|....*....|....*....|.
gi 300491073   16 MLQFMKQLREHVTVGVVGGSDLVKISEQLGK 46
Cdd:pfam03332   1 VKDFLQKLRKRVTIGVVGGSDLSKIQEQLGD 31
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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