NCBI Conserved Domain Search

Conserved domains on [gi|305672159|gb|ADM63498|]

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photosystem II subunit N (chloroplast) [Villarsia sp. Fay s.n.]

Protein Classification

photosystem II protein N( domain architecture ID 10000016)

photosystem II protein N (or protein PsbN) may play a role in photosystem I and II biogenesis

Gene Symbol: psbN

Gene Ontology: GO:0016020

PubMed: 24619613|15100025

Graphical summary

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List of domain hits

Name

Accession

Description

Interval

E-value

psbN

CHL00020

photosystem II protein N

1-43

1.37e-24

photosystem II protein N

Pssm-ID: 176963 Cd Length: 43 Bit Score: 84.74 E-value: 1.37e-24

                        10        20        30        40
                ....*....|....*....|....*....|....*....|...
gi 305672159  1 METATLVAIFISGLLVSFTGYALYTAFGQPSQQLRDPFEEHGD 43
Cdd:CHL00020  1 METATLVAIFISGLLVSFTGYALYTAFGQPSKQLRDPFEEHED 43

Name

Accession

Description

Interval

E-value

psbN

CHL00020

photosystem II protein N

1-43

1.37e-24

photosystem II protein N

Pssm-ID: 176963 Cd Length: 43 Bit Score: 84.74 E-value: 1.37e-24

                        10        20        30        40
                ....*....|....*....|....*....|....*....|...
gi 305672159  1 METATLVAIFISGLLVSFTGYALYTAFGQPSQQLRDPFEEHGD 43
Cdd:CHL00020  1 METATLVAIFISGLLVSFTGYALYTAFGQPSKQLRDPFEEHED 43

PsbN

pfam02468

Photosystem II reaction centre N protein (psbN); This is a family of small proteins encoded on ...

1-43

4.13e-21

Photosystem II reaction centre N protein (psbN); This is a family of small proteins encoded on the chloroplast genome. psbN is involved in photosystem II during photosynthesis, but its exact role is unknown.

Pssm-ID: 426789 Cd Length: 43 Bit Score: 75.79 E-value: 4.13e-21

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 305672159   1 METATLVAIFISGLLVSFTGYALYTAFGQPSQQLRDPFEEHGD 43
Cdd:pfam02468  1 MEPATVLSISIAAVLVAITGYSIYTAFGPPSKELRDPFEDHED 43

Name

Accession

Description

Interval

E-value

psbN

CHL00020

photosystem II protein N

1-43

1.37e-24

photosystem II protein N

Pssm-ID: 176963 Cd Length: 43 Bit Score: 84.74 E-value: 1.37e-24

                        10        20        30        40
                ....*....|....*....|....*....|....*....|...
gi 305672159  1 METATLVAIFISGLLVSFTGYALYTAFGQPSQQLRDPFEEHGD 43
Cdd:CHL00020  1 METATLVAIFISGLLVSFTGYALYTAFGQPSKQLRDPFEEHED 43

PsbN

pfam02468

Photosystem II reaction centre N protein (psbN); This is a family of small proteins encoded on ...

1-43

4.13e-21

Pssm-ID: 426789 Cd Length: 43 Bit Score: 75.79 E-value: 4.13e-21

                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 305672159   1 METATLVAIFISGLLVSFTGYALYTAFGQPSQQLRDPFEEHGD 43
Cdd:pfam02468  1 MEPATVLSISIAAVLVAITGYSIYTAFGPPSKELRDPFEDHED 43

psbN

PRK13183

photosystem II reaction center protein PsbN;

1-43

3.85e-13

photosystem II reaction center protein PsbN;

Pssm-ID: 171884 Cd Length: 46 Bit Score: 55.82 E-value: 3.85e-13

                        10        20        30        40
                ....*....|....*....|....*....|....*....|...
gi 305672159  1 METATLVAIFISGLLVSFTGYALYTAFGQPSQQLRDPFEEHGD 43
Cdd:PRK13183  4 MSPALSLAITILAILLALTGFGIYTAFGPPSKELDDPFDDHED 46

Blast search parameters

Data Source:	Precalculated data, version = cdd.v.3.21
Preset Options:	Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01