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Conserved domains on  [gi|313870663|gb|ADR82216|]
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trimeric autotransporter adhesin 9x, partial [Actinobacillus pleuropneumoniae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
auto_Ata super family cl41274
trimeric autotransporter adhesin Ata; Ata (Acinetobacter trimeric autotransporter) has an ...
 9-179 1.85e-05

trimeric autotransporter adhesin Ata; Ata (Acinetobacter trimeric autotransporter) has an architecture that consists of a long signal peptide, a repetitive passenger domain that varies in length from strain to strain, and a C-terminal domain of four transmembrane beta stands that forms one third of the pore for autotransporter activity and anchoring in the outer membrane.


The actual alignment was detected with superfamily member NF033481:

Pssm-ID: 411124 [Multi-domain]  Cd Length: 1862  Bit Score: 46.01  E-value: 1.85e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313870663    9 KVVDGTKGLDGNNGKDGESKTRIVYEKPNGGGTEEIATLNDGLNFVGDKGQVIQKKLNETLAIKGNLDAAAVVTDKNLRV 88
Cdd:NF033481 1032 QITDTNTKLNNTKDQLTTQINDTKTELNNTIGNTKTELENKGLNFAGNSGADVHRKLGDKLNIVGGAAASTPAAKTSGEN 1111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313870663   89 DNDKDKNGELIIKMAKSltdltNATFSSDDSNTVIGGNGLTITpkagDEVSLTDKGLNNGNNTIINVAPGVNGTDAVNKD 168
Cdd:NF033481 1112 VITRTTKDGIQIELLKD-----SKFDSVTTGNTTLNTNGLTIK----EGPSITKDGINAGGKQITNVADGINAKDAVNKG 1182

                         170
                  ....*....|.
gi 313870663  169 QLDGVNATANA 179
Cdd:NF033481 1183 QLDNLAAKQNA 1193
gly_rich_SclB super family cl45768
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 241-278 5.64e-03

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


The actual alignment was detected with superfamily member NF038329:

Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 37.96  E-value: 5.64e-03
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 313870663 241 DGQLGVQGKDGKTGVtlNGKDGSIGLTGPKGADGKDGA 278
Cdd:NF038329 277 DGERGPVGPAGKDGQ--NGKDGLPGKDGKDGQNGKDGL 312
 
Name Accession Description Interval E-value
auto_Ata NF033481
trimeric autotransporter adhesin Ata; Ata (Acinetobacter trimeric autotransporter) has an ...
 9-179 1.85e-05

trimeric autotransporter adhesin Ata; Ata (Acinetobacter trimeric autotransporter) has an architecture that consists of a long signal peptide, a repetitive passenger domain that varies in length from strain to strain, and a C-terminal domain of four transmembrane beta stands that forms one third of the pore for autotransporter activity and anchoring in the outer membrane.


Pssm-ID: 411124 [Multi-domain]  Cd Length: 1862  Bit Score: 46.01  E-value: 1.85e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313870663    9 KVVDGTKGLDGNNGKDGESKTRIVYEKPNGGGTEEIATLNDGLNFVGDKGQVIQKKLNETLAIKGNLDAAAVVTDKNLRV 88
Cdd:NF033481 1032 QITDTNTKLNNTKDQLTTQINDTKTELNNTIGNTKTELENKGLNFAGNSGADVHRKLGDKLNIVGGAAASTPAAKTSGEN 1111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313870663   89 DNDKDKNGELIIKMAKSltdltNATFSSDDSNTVIGGNGLTITpkagDEVSLTDKGLNNGNNTIINVAPGVNGTDAVNKD 168
Cdd:NF033481 1112 VITRTTKDGIQIELLKD-----SKFDSVTTGNTTLNTNGLTIK----EGPSITKDGINAGGKQITNVADGINAKDAVNKG 1182

                         170
                  ....*....|.
gi 313870663  169 QLDGVNATANA 179
Cdd:NF033481 1183 QLDNLAAKQNA 1193
YadA_stalk pfam05662
Coiled stalk of trimeric autotransporter adhesin; This short motif is found in invasins and ...
 151-192 6.17e-05

Coiled stalk of trimeric autotransporter adhesin; This short motif is found in invasins and haemagglutinins, normally associated with (pfam05658).


Pssm-ID: 428572 [Multi-domain]  Cd Length: 43  Bit Score: 39.48  E-value: 6.17e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 313870663  151 TIINVAPGVNGTDAVNKDQLDGVNATANAGWNLTTNGDNTNA 192
Cdd:pfam05662   1 KITNVAAGTVSTDAVNGSQLYAVNQSVSNGANNVTSGNANAN 42
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 241-278 5.64e-03

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 37.96  E-value: 5.64e-03
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 313870663 241 DGQLGVQGKDGKTGVtlNGKDGSIGLTGPKGADGKDGA 278
Cdd:NF038329 277 DGERGPVGPAGKDGQ--NGKDGLPGKDGKDGQNGKDGL 312
auto_Ata NF033481
trimeric autotransporter adhesin Ata; Ata (Acinetobacter trimeric autotransporter) has an ...
 48-189 6.25e-03

trimeric autotransporter adhesin Ata; Ata (Acinetobacter trimeric autotransporter) has an architecture that consists of a long signal peptide, a repetitive passenger domain that varies in length from strain to strain, and a C-terminal domain of four transmembrane beta stands that forms one third of the pore for autotransporter activity and anchoring in the outer membrane.


Pssm-ID: 411124 [Multi-domain]  Cd Length: 1862  Bit Score: 38.31  E-value: 6.25e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313870663   48 NDGLNFVGDKGQVIQKKLNETLAIKGNLDA---AAVVTDKNLRVDNDKDKNGELIIKMAKSLTDLTnatfssddSNTVIG 124
Cdd:NF033481  873 NKGLNFAGNSGADVHRKLGDKLNIVGGAAAstpAAKTSGENVITRTTQDGIQIELLKDSKFDSVTT--------GNTTLN 944

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 313870663  125 GNGLTITpkagDEVSLTDKGLNNGNNTIINVAPGVNGTDAVNKDQLDGVNATANAGWNLTTNGDN 189
Cdd:NF033481  945 TNGLTIK----EGPSITKQGINAGSKQITNVADGINAKDAVNVDQLTKVKENLNGRITDTNNQLN 1005
 
Name Accession Description Interval E-value
auto_Ata NF033481
trimeric autotransporter adhesin Ata; Ata (Acinetobacter trimeric autotransporter) has an ...
 9-179 1.85e-05

trimeric autotransporter adhesin Ata; Ata (Acinetobacter trimeric autotransporter) has an architecture that consists of a long signal peptide, a repetitive passenger domain that varies in length from strain to strain, and a C-terminal domain of four transmembrane beta stands that forms one third of the pore for autotransporter activity and anchoring in the outer membrane.


Pssm-ID: 411124 [Multi-domain]  Cd Length: 1862  Bit Score: 46.01  E-value: 1.85e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313870663    9 KVVDGTKGLDGNNGKDGESKTRIVYEKPNGGGTEEIATLNDGLNFVGDKGQVIQKKLNETLAIKGNLDAAAVVTDKNLRV 88
Cdd:NF033481 1032 QITDTNTKLNNTKDQLTTQINDTKTELNNTIGNTKTELENKGLNFAGNSGADVHRKLGDKLNIVGGAAASTPAAKTSGEN 1111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313870663   89 DNDKDKNGELIIKMAKSltdltNATFSSDDSNTVIGGNGLTITpkagDEVSLTDKGLNNGNNTIINVAPGVNGTDAVNKD 168
Cdd:NF033481 1112 VITRTTKDGIQIELLKD-----SKFDSVTTGNTTLNTNGLTIK----EGPSITKDGINAGGKQITNVADGINAKDAVNKG 1182

                         170
                  ....*....|.
gi 313870663  169 QLDGVNATANA 179
Cdd:NF033481 1183 QLDNLAAKQNA 1193
YadA_stalk pfam05662
Coiled stalk of trimeric autotransporter adhesin; This short motif is found in invasins and ...
 151-192 6.17e-05

Coiled stalk of trimeric autotransporter adhesin; This short motif is found in invasins and haemagglutinins, normally associated with (pfam05658).


Pssm-ID: 428572 [Multi-domain]  Cd Length: 43  Bit Score: 39.48  E-value: 6.17e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 313870663  151 TIINVAPGVNGTDAVNKDQLDGVNATANAGWNLTTNGDNTNA 192
Cdd:pfam05662   1 KITNVAAGTVSTDAVNGSQLYAVNQSVSNGANNVTSGNANAN 42
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
 241-278 5.64e-03

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 37.96  E-value: 5.64e-03
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 313870663 241 DGQLGVQGKDGKTGVtlNGKDGSIGLTGPKGADGKDGA 278
Cdd:NF038329 277 DGERGPVGPAGKDGQ--NGKDGLPGKDGKDGQNGKDGL 312
auto_Ata NF033481
trimeric autotransporter adhesin Ata; Ata (Acinetobacter trimeric autotransporter) has an ...
 48-189 6.25e-03

trimeric autotransporter adhesin Ata; Ata (Acinetobacter trimeric autotransporter) has an architecture that consists of a long signal peptide, a repetitive passenger domain that varies in length from strain to strain, and a C-terminal domain of four transmembrane beta stands that forms one third of the pore for autotransporter activity and anchoring in the outer membrane.


Pssm-ID: 411124 [Multi-domain]  Cd Length: 1862  Bit Score: 38.31  E-value: 6.25e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 313870663   48 NDGLNFVGDKGQVIQKKLNETLAIKGNLDA---AAVVTDKNLRVDNDKDKNGELIIKMAKSLTDLTnatfssddSNTVIG 124
Cdd:NF033481  873 NKGLNFAGNSGADVHRKLGDKLNIVGGAAAstpAAKTSGENVITRTTQDGIQIELLKDSKFDSVTT--------GNTTLN 944

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 313870663  125 GNGLTITpkagDEVSLTDKGLNNGNNTIINVAPGVNGTDAVNKDQLDGVNATANAGWNLTTNGDN 189
Cdd:NF033481  945 TNGLTIK----EGPSITKQGINAGSKQITNVADGINAKDAVNVDQLTKVKENLNGRITDTNNQLN 1005
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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