|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-366 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 749.93 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 1 INHSFIDLPTPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFIC 80
Cdd:MTH00100 14 INHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFIC 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 81 LFLHVGRGMYYGSYTFMETWNIGVILLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKA 160
Cdd:MTH00100 94 LFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKA 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 161 TLTRFFAFHFILPFIIAALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDLLGVFMLILFLMTLVLFFPDLLGDP 240
Cdd:MTH00100 174 TLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDP 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 241 DNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFLPFLHTSKQRSLMFRPITQVLYWMLAANLL 320
Cdd:MTH00100 254 DNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLL 333
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 317039363 321 ILTWIGGQPVEHPFIIIGQLASISYFSIILILMPISGIIEDKLLKW 366
Cdd:MTH00100 334 TLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
3-360 |
1.22e-133 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 387.22 E-value: 1.22e-133
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 3 HSFIDLPTPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLF 82
Cdd:COG1290 25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 83 LHVGRGMYYGSYTFME--TWNIGVILLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKA 160
Cdd:COG1290 105 LHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDA 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 161 TLTRFFAFH-FILPFIIAALVIVHLLFLHETGSNNPTG----LNSDADKIPFHPYYTIKDLLGVFMLILFLMTLVLFFPD 235
Cdd:COG1290 185 TLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 236 llGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALILSILILAFLPFLHTSKQRSLMFRPITQVLYW 313
Cdd:COG1290 265 --NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGV 342
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 317039363 314 MLAANLLILTWIGGQPVehPFIIIGQLASISYFSIILILMPISGIIE 360
Cdd:COG1290 343 AFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-193 |
9.15e-96 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 283.49 E-value: 9.15e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 1 INHSFIDLPTPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFIC 80
Cdd:cd00284 6 VNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLM 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 81 LFLHVGRGMYYGSY--TFMETWNIGVILLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVD 158
Cdd:cd00284 86 LYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVD 165
|
170 180 190
....*....|....*....|....*....|....*
gi 317039363 159 KATLTRFFAFHFILPFIIAALVIVHLLFLHETGSN 193
Cdd:cd00284 166 NATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
5-191 |
1.32e-87 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 262.32 E-value: 1.32e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 5 FIDLPTPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLH 84
Cdd:pfam00033 1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 85 VGRGMYYG--SYTFMETWNIGVILLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATL 162
Cdd:pfam00033 81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160
|
170 180
....*....|....*....|....*....
gi 317039363 163 TRFFAFHFILPFIIAALVIVHLLFLHETG 191
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
215-312 |
1.06e-07 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 50.95 E-value: 1.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 215 DLLGVFMLILF-----LMTLVLFFPDLLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILA 289
Cdd:TIGR01156 35 DLLYIFPVVILgtiacVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLL 109
|
90 100
....*....|....*....|....
gi 317039363 290 FLPFLHT-SKQRSLMFRPITQVLY 312
Cdd:TIGR01156 110 TVPFIENvNKFQNPFRRPVATTVF 133
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-366 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 749.93 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 1 INHSFIDLPTPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFIC 80
Cdd:MTH00100 14 INHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFIC 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 81 LFLHVGRGMYYGSYTFMETWNIGVILLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKA 160
Cdd:MTH00100 94 LFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKA 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 161 TLTRFFAFHFILPFIIAALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDLLGVFMLILFLMTLVLFFPDLLGDP 240
Cdd:MTH00100 174 TLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDP 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 241 DNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFLPFLHTSKQRSLMFRPITQVLYWMLAANLL 320
Cdd:MTH00100 254 DNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLL 333
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 317039363 321 ILTWIGGQPVEHPFIIIGQLASISYFSIILILMPISGIIEDKLLKW 366
Cdd:MTH00100 334 TLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
|
|
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-366 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 678.16 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 1 INHSFIDLPTPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFIC 80
Cdd:MTH00119 15 INNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFIC 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 81 LFLHVGRGMYYGSYTFMETWNIGVILLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKA 160
Cdd:MTH00119 95 IYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNP 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 161 TLTRFFAFHFILPFIIAALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDLLGVFMLILFLMTLVLFFPDLLGDP 240
Cdd:MTH00119 175 TLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDP 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 241 DNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFLPFLHTSKQRSLMFRPITQVLYWMLAANLL 320
Cdd:MTH00119 255 ENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLL 334
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 317039363 321 ILTWIGGQPVEHPFIIIGQLASISYFSIILILMPISGIIEDKLLKW 366
Cdd:MTH00119 335 ILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-367 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 668.67 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 1 INHSFIDLPTPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFIC 80
Cdd:MTH00131 14 ANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFIC 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 81 LFLHVGRGMYYGSYTFMETWNIGVILLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKA 160
Cdd:MTH00131 94 IYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNA 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 161 TLTRFFAFHFILPFIIAALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDLLGVFMLILFLMTLVLFFPDLLGDP 240
Cdd:MTH00131 174 TLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDP 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 241 DNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFLPFLHTSKQRSLMFRPITQVLYWMLAANLL 320
Cdd:MTH00131 254 DNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVL 333
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 317039363 321 ILTWIGGQPVEHPFIIIGQLASISYFSIILILMPISGIIEDKLLKWS 367
Cdd:MTH00131 334 ILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALEWA 380
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-366 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 652.52 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 1 INHSFIDLPTPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFIC 80
Cdd:MTH00074 15 INNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFIC 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 81 LFLHVGRGMYYGSYTFMETWNIGVILLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKA 160
Cdd:MTH00074 95 IYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKA 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 161 TLTRFFAFHFILPFIIAALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDLLGVFMLILFLMTLVLFFPDLLGDP 240
Cdd:MTH00074 175 TLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDP 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 241 DNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFLPFLHTSKQRSLMFRPITQVLYWMLAANLL 320
Cdd:MTH00074 255 DNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTL 334
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 317039363 321 ILTWIGGQPVEHPFIIIGQLASISYFSIILILMPISGIIEDKLLKW 366
Cdd:MTH00074 335 ILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLKW 380
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-355 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 626.17 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 1 INHSFIDLPTPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFIC 80
Cdd:MTH00191 11 VNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFIC 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 81 LFLHVGRGMYYGSYTFMETWNIGVILLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKA 160
Cdd:MTH00191 91 IYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNA 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 161 TLTRFFAFHFILPFIIAALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDLLGVFMLILFLMTLVLFFPDLLGDP 240
Cdd:MTH00191 171 TLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDP 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 241 DNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFLPFLHTSKQRSLMFRPITQVLYWMLAANLL 320
Cdd:MTH00191 251 ENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFI 330
|
330 340 350
....*....|....*....|....*....|....*
gi 317039363 321 ILTWIGGQPVEHPFIIIGQLASISYFSIILILMPI 355
Cdd:MTH00191 331 LLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
|
|
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-353 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 611.02 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 1 INHSFIDLPTPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFIC 80
Cdd:MTH00156 4 INNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFIC 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 81 LFLHVGRGMYYGSYTFMETWNIGVILLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKA 160
Cdd:MTH00156 84 IYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 161 TLTRFFAFHFILPFIIAALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDLLGVFMLILFLMTLVLFFPDLLGDP 240
Cdd:MTH00156 164 TLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDP 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 241 DNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFLPFLHTSKQRSLMFRPITQVLYWMLAANLL 320
Cdd:MTH00156 244 ENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVI 323
|
330 340 350
....*....|....*....|....*....|...
gi 317039363 321 ILTWIGGQPVEHPFIIIGQLASISYFSIILILM 353
Cdd:MTH00156 324 LLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-364 |
0e+00 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 587.26 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 1 INHSFIDLPTPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFIC 80
Cdd:MTH00145 15 VNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFIC 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 81 LFLHVGRGMYYGSYTFMETWNIGVILLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKA 160
Cdd:MTH00145 95 IYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNA 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 161 TLTRFFAFHFILPFIIAALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDLLGVFMLILFLMTLVLFFPDLLGDP 240
Cdd:MTH00145 175 TLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDP 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 241 DNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFLPFLHTSKQRSLMFRPITQVLYWMLAANLL 320
Cdd:MTH00145 255 ENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFF 334
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 317039363 321 ILTWIGGQPVEHPFIIIGQLASISYFSIILILmPISGIIEDKLL 364
Cdd:MTH00145 335 ILTWIGACPVEEPYETIGQVFTVLYFLFFLIL-PLVQKLWDNIL 377
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-364 |
0e+00 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 583.59 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 1 INHSFIDLPTPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFIC 80
Cdd:MTH00034 14 LNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFIC 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 81 LFLHVGRGMYYGSYTFMETWNIGVILLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKA 160
Cdd:MTH00034 94 LYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNA 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 161 TLTRFFAFHFILPFIIAALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDLLGVFMLILFLMTLVLFFPDLLGDP 240
Cdd:MTH00034 174 TLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDP 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 241 DNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFLPFLHTSKQRSLMFRPITQVLYWMLAANLL 320
Cdd:MTH00034 254 ENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFF 333
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 317039363 321 ILTWIGGQPVEHPFIIIGQLASISYFSIILILMPISGIIEDKLL 364
Cdd:MTH00034 334 ILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLI 377
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-365 |
0e+00 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 551.21 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 1 INHSFIDLPTPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFIC 80
Cdd:MTH00016 15 MNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFIC 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 81 LFLHVGRGMYYGSYTFMETWNIGVILLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKA 160
Cdd:MTH00016 95 LYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNA 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 161 TLTRFFAFHFILPFIIAALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDLLGVFMLILFLMTLVLFFPDLLGDP 240
Cdd:MTH00016 175 TLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDP 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 241 DNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFLPFLHTSKQRSLMFRPITQVLYWMLAANLL 320
Cdd:MTH00016 255 ENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFL 334
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 317039363 321 ILTWIGGQPVEHPFIIIGQLASISYFSiILILMPISGIIEDKLLK 365
Cdd:MTH00016 335 LLTWIGGRPVEPPYEFLGQIFTVFYFF-YFMINPLLMKLWDKLLK 378
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
1-365 |
0e+00 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 508.47 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 1 INHSFIDLPTPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFIC 80
Cdd:MTH00022 13 VNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLC 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 81 LFLHVGRGMYYGSYTFMETWNIGVILLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKA 160
Cdd:MTH00022 93 LYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNA 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 161 TLTRFFAFHFILPFIIAALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDLLGVFMLILFLMTLVLFFPDLLGDP 240
Cdd:MTH00022 173 TLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDP 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 241 DNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFLPFLHTSKQRSLMFRPITQVLYWMLAANLL 320
Cdd:MTH00022 253 ENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFI 332
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 317039363 321 ILTWIGGQPVEHPFIIIGQLASISYFSIILILMPISGIIEDKLLK 365
Cdd:MTH00022 333 LLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-365 |
1.84e-180 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 505.40 E-value: 1.84e-180
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 1 INHSFIDLPTPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFIC 80
Cdd:MTH00053 15 VNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLC 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 81 LFLHVGRGMYYGSYTFMETWNIGVILLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKA 160
Cdd:MTH00053 95 VYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNA 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 161 TLTRFFAFHFILPFIIAALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDLLGVFMLILFLMTLVLFFPDLLGDP 240
Cdd:MTH00053 175 TLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDA 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 241 DNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFLPFLHTSKQRSLMFRPITQVLYWMLAANLL 320
Cdd:MTH00053 255 ENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFF 334
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 317039363 321 ILTWIGGQPVEHPFIIIGQLASISYFSIILILMPISGIIEDKLLK 365
Cdd:MTH00053 335 LLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLK 379
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-365 |
9.43e-173 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 485.97 E-value: 9.43e-173
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 1 INHSFIDLPTPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFIC 80
Cdd:MTH00224 15 LNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLF 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 81 LFLHVGRGMYYGSYTFMETWNIGVILLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKA 160
Cdd:MTH00224 95 IYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNA 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 161 TLTRFFAFHFILPFIIAALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDLLGVFMLILFLMTLVLFFPDLLGDP 240
Cdd:MTH00224 175 TLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDP 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 241 DNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFLPFLHTSKQRSLMFRPITQVLYWMLAANLL 320
Cdd:MTH00224 255 ENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWA 334
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 317039363 321 ILTWIGGQPVEHPFIIIGQLASISYFSiILILMPISGIIEDKLLK 365
Cdd:MTH00224 335 ILTWIGGRPVEDPFEGIGQVFTILYFS-YFIISPAISKLWDDLLN 378
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
6-367 |
1.85e-134 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 388.91 E-value: 1.85e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 6 IDLPTPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHV 85
Cdd:MTH00033 16 IDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHI 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 86 GRGMYYGSYTFMETWNIGVILLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRF 165
Cdd:MTH00033 96 GRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRF 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 166 FAFHFILPFIIAALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDLLGVFMLILFLMTLVL--FFPDLLGDPDNY 243
Cdd:MTH00033 176 FSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIepRIETLLQDPENF 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 244 TPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFLPFLHTSKQRSLMFRPITQVLYWMLAANLLILT 323
Cdd:MTH00033 256 IQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILT 335
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 317039363 324 WIGGQPV-EHPFIIIGQLASISYFSIILILMPISGIIEDKLLKWS 367
Cdd:MTH00033 336 WIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSNLFYEYN 380
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
3-360 |
1.22e-133 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 387.22 E-value: 1.22e-133
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 3 HSFIDLPTPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLF 82
Cdd:COG1290 25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 83 LHVGRGMYYGSYTFME--TWNIGVILLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKA 160
Cdd:COG1290 105 LHMFRGFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDA 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 161 TLTRFFAFH-FILPFIIAALVIVHLLFLHETGSNNPTG----LNSDADKIPFHPYYTIKDLLGVFMLILFLMTLVLFFPD 235
Cdd:COG1290 185 TLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 236 llGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALILSILILAFLPFLHTSKQRSLMFRPITQVLYW 313
Cdd:COG1290 265 --NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGV 342
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 317039363 314 MLAANLLILTWIGGQPVehPFIIIGQLASISYFSIILILMPISGIIE 360
Cdd:COG1290 343 AFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
6-353 |
2.95e-118 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 346.54 E-value: 2.95e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 6 IDLPTPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHV 85
Cdd:MTH00086 8 VTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHI 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 86 GRGMYYGSYTFMETWNIGVILLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRF 165
Cdd:MTH00086 88 FKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFF 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 166 FAFHFILPFIIAALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDLLGVFMLILFLMtLVLFFPDLLGDPDNYTP 245
Cdd:MTH00086 168 FVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLVFII-FSLFYPFNLGDPEMFIE 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 246 ANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFLPFLHTSKQrslMFRPITQVLYWMLAANLLILTWI 325
Cdd:MTH00086 247 ADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYTS---CLNKLNKFLVFSFIVVNVILSWL 323
|
330 340
....*....|....*....|....*...
gi 317039363 326 GGQPVEHPFIIIGQLASISYFSIILILM 353
Cdd:MTH00086 324 GQCLVEYPFLFLSQIFSFIYFFLILLML 351
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-193 |
9.15e-96 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 283.49 E-value: 9.15e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 1 INHSFIDLPTPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFIC 80
Cdd:cd00284 6 VNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLM 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 81 LFLHVGRGMYYGSY--TFMETWNIGVILLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVD 158
Cdd:cd00284 86 LYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVD 165
|
170 180 190
....*....|....*....|....*....|....*
gi 317039363 159 KATLTRFFAFHFILPFIIAALVIVHLLFLHETGSN 193
Cdd:cd00284 166 NATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
6-351 |
2.70e-90 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 275.32 E-value: 2.70e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 6 IDLPTPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHV 85
Cdd:MTH00046 10 IDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHM 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 86 GRGMYYGSYTFMETWNIGVILLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRF 165
Cdd:MTH00046 90 GRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRV 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 166 FAFHFILPFIIAALVIVHLLFLHETGSNNPTGL-NSDADKIPFHPYYTIKDLLGVFMLILFLMTLVLFFPDLLGDPDNYT 244
Cdd:MTH00046 170 FSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYL 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 245 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFlpflhTSKQRSLMFRPITQVLYWMLAANLLILTW 324
Cdd:MTH00046 250 EADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLVLVLSFLFFLWV-----PTFNGSSVYSVWRQVNFWLIVSLFFSLSY 324
|
330 340
....*....|....*....|....*..
gi 317039363 325 IGGQPVEHPFIIIGQLASISYFSIILI 351
Cdd:MTH00046 325 LGGCHPEYPYLLISQLFSVLMVLLLFI 351
|
|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
5-191 |
1.32e-87 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 262.32 E-value: 1.32e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 5 FIDLPTPSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLH 84
Cdd:pfam00033 1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 85 VGRGMYYG--SYTFMETWNIGVILLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATL 162
Cdd:pfam00033 81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160
|
170 180
....*....|....*....|....*....
gi 317039363 163 TRFFAFHFILPFIIAALVIVHLLFLHETG 191
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
|
|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
194-341 |
4.58e-53 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 172.45 E-value: 4.58e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 194 NPTGLNSDADKIPFHPYYTIKDLLGVFMLILFLMTLVLFFPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPN 273
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 317039363 274 KLGGVLALILSILILAFLPFLHTSKQRSlMFRPITQVLYWMLAANLLILTWIGGQPVEHPFIIIGQLA 341
Cdd:cd00290 81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
75-240 |
1.93e-47 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 158.56 E-value: 1.93e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 75 SMFFICLFLHVGRGMYYGSYTFME--TWNIGVILLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIW 152
Cdd:pfam13631 1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 153 GGFSVDKATLTRFFAFHF-ILPFIIAALVIVHLLFLHETGSNNPTGLNSDADKIPFHPYYTIKDLLGVFMLILFLMTLVL 231
Cdd:pfam13631 81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160
|
....*....
gi 317039363 232 FFPDLLGDP 240
Cdd:pfam13631 161 INPIWLGGP 169
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
20-195 |
3.36e-42 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 146.78 E-value: 3.36e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 20 FGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGMYYGSYTFME- 98
Cdd:PRK03735 44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 99 -TWNIGVILLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFH-FILPFII 176
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203
|
170
....*....|....*....
gi 317039363 177 AALVIVHLLFLHETGSNNP 195
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGP 222
|
|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
245-345 |
2.91e-39 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 134.91 E-value: 2.91e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 245 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFLPFLHTSKQRSLMFRPITQVLYWMLAANLLILTW 324
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80
|
90 100
....*....|....*....|.
gi 317039363 325 IGGQPVEHPFIIIGQLASISY 345
Cdd:pfam00032 81 LGKQPPTGPYTLLGQIATVYY 101
|
|
| petB |
CHL00070 |
cytochrome b6 |
11-195 |
1.35e-36 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 131.77 E-value: 1.35e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 11 PSNISSWWNFGSLLGLCLMIQIVTGLFLAMHYTSDTTTAFSSVTHICRDVNYGWLIRYMHANGASMFFICLFLHVGRGMY 90
Cdd:CHL00070 27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 91 YGSYTFME--TWNIGVILLFATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAF 168
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186
|
170 180
....*....|....*....|....*...
gi 317039363 169 H-FILPFIIAALVIVHLLFLHETGSNNP 195
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGP 214
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
216-308 |
3.89e-08 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 52.31 E-value: 3.89e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 216 LLGVFMLILFLMTLVlffPDLLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFLPFLH 295
Cdd:CHL00058 44 ILGTIACNVGLAVLE---PSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLE 115
|
90
....*....|....
gi 317039363 296 TSKQRSLMF-RPIT 308
Cdd:CHL00058 116 NVNKFQNPFrRPVA 129
|
|
| PetD |
COG5679 |
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
216-294 |
4.08e-08 |
|
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];
Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 52.10 E-value: 4.08e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 317039363 216 LLGVFMLILFLMTLVlffPDLLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILAFLPFL 294
Cdd:COG5679 45 ILGTIALCIGLAVLD---PAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFI 115
|
|
| cytb6/f_IV |
TIGR01156 |
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
215-312 |
1.06e-07 |
|
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]
Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 50.95 E-value: 1.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317039363 215 DLLGVFMLILF-----LMTLVLFFPDLLGDPdnytpANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALILSILILA 289
Cdd:TIGR01156 35 DLLYIFPVVILgtiacVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLL 109
|
90 100
....*....|....*....|....
gi 317039363 290 FLPFLHT-SKQRSLMFRPITQVLY 312
Cdd:TIGR01156 110 TVPFIENvNKFQNPFRRPVATTVF 133
|
|
| |
