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Conserved domains on  [gi|321173311|gb|ADW77429|]
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POU domain transcription factor OCT4-pg3 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Pou super family cl22952
Pou domain - N-terminal to homeobox domain;
138-167 6.25e-11

Pou domain - N-terminal to homeobox domain;


The actual alignment was detected with superfamily member smart00352:

Pssm-ID: 473999  Cd Length: 75  Bit Score: 55.91  E-value: 6.25e-11
                           10        20        30
                   ....*....|....*....|....*....|
gi 321173311   138 DIKALQKELEQFAKLLKQKRITLGYTQADV 167
Cdd:smart00352   1 DDDTDPRELEAFAKQFKQRRIKLGFTQADV 30
 
Name Accession Description Interval E-value
POU smart00352
Found in Pit-Oct-Unc transcription factors;
138-167 6.25e-11

Found in Pit-Oct-Unc transcription factors;


Pssm-ID: 197673  Cd Length: 75  Bit Score: 55.91  E-value: 6.25e-11
                           10        20        30
                   ....*....|....*....|....*....|
gi 321173311   138 DIKALQKELEQFAKLLKQKRITLGYTQADV 167
Cdd:smart00352   1 DDDTDPRELEAFAKQFKQRRIKLGFTQADV 30
Pou pfam00157
Pou domain - N-terminal to homeobox domain;
143-169 4.25e-10

Pou domain - N-terminal to homeobox domain;


Pssm-ID: 459692  Cd Length: 72  Bit Score: 53.43  E-value: 4.25e-10
                          10        20
                  ....*....|....*....|....*..
gi 321173311  143 QKELEQFAKLLKQKRITLGYTQADVAH 169
Cdd:pfam00157   3 LEELEEFAKEFKQRRIKLGYTQADVGS 29
 
Name Accession Description Interval E-value
POU smart00352
Found in Pit-Oct-Unc transcription factors;
138-167 6.25e-11

Found in Pit-Oct-Unc transcription factors;


Pssm-ID: 197673  Cd Length: 75  Bit Score: 55.91  E-value: 6.25e-11
                           10        20        30
                   ....*....|....*....|....*....|
gi 321173311   138 DIKALQKELEQFAKLLKQKRITLGYTQADV 167
Cdd:smart00352   1 DDDTDPRELEAFAKQFKQRRIKLGFTQADV 30
Pou pfam00157
Pou domain - N-terminal to homeobox domain;
143-169 4.25e-10

Pou domain - N-terminal to homeobox domain;


Pssm-ID: 459692  Cd Length: 72  Bit Score: 53.43  E-value: 4.25e-10
                          10        20
                  ....*....|....*....|....*..
gi 321173311  143 QKELEQFAKLLKQKRITLGYTQADVAH 169
Cdd:pfam00157   3 LEELEEFAKEFKQRRIKLGYTQADVGS 29
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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