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Conserved domains on  [gi|326653245|gb|AEA02555|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Sphenomorphus cranei]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475913)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-323 1.62e-142

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 406.88  E-value: 1.62e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245   1 MNPIMTSLIISSLALGTVITMSSFHWFLAWMGLELNTLAIIPIIAKQHHPRATEATTKYFLIQAAASATVLFSSTINAWS 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  81 TGTWDIMQLTNEPACIMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAPMALLYLTHHSlHPTTLLTMALL 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 161 STLIGGWGGLNQTQTRKIMAYSSIAHLGWMASILTLSPNLLLLNLALYLLMTTSAFMTLMYASSKTIKDLTTAWTLSPTI 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 241 TALMLILLMSMGGLPPLTGFMPKWLILQDLTTHCLTMTATIMALSALLSLFFYLRLSYTTALTLSPTTPQNKFKWRFQPK 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319


                 ...
gi 326653245 321 LKT 323
Cdd:MTH00135 320 QLT 322
 
Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-323 1.62e-142

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 406.88  E-value: 1.62e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245   1 MNPIMTSLIISSLALGTVITMSSFHWFLAWMGLELNTLAIIPIIAKQHHPRATEATTKYFLIQAAASATVLFSSTINAWS 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  81 TGTWDIMQLTNEPACIMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAPMALLYLTHHSlHPTTLLTMALL 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 161 STLIGGWGGLNQTQTRKIMAYSSIAHLGWMASILTLSPNLLLLNLALYLLMTTSAFMTLMYASSKTIKDLTTAWTLSPTI 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 241 TALMLILLMSMGGLPPLTGFMPKWLILQDLTTHCLTMTATIMALSALLSLFFYLRLSYTTALTLSPTTPQNKFKWRFQPK 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319


                 ...
gi 326653245 321 LKT 323
Cdd:MTH00135 320 QLT 322
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 7-296 6.22e-31

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 121.76  E-value: 6.22e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245   7 SLIISSLaLGTVITMSSFHWFLAWMGLELNTLAIIPIIA-KQHHPRATEATTKYFLIQAAASATVLFSSTINAWSTGTWD 85
Cdd:COG1007  106 ALLLFAT-LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLN 184

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  86 IMQLTNE------------PACIMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAPMA----LLYLTHHSL 149
Cdd:COG1007  185 LAGIAAAlaaggansplllLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAallrLLVEAFPGL 264

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 150 HP---TTLLTMALLSTLIGGWGGLNQTQTRKIMAYSSIAHLGWM----ASILTLSPNLLLLNLALYLLMTTSAFMTLMYA 222
Cdd:COG1007  265 AAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLllglAAGTPLGVSAALFYLLAYLFMNLGAFAVILLL 344

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 326653245 223 SSK-----TIKDLTTAWTLSPTITALMLILLMSMGGLPPLTGFMPKWLILQDLTTHCLTMTATIMALSALLSLFFYLRL 296
Cdd:COG1007  345 SRKggeaeEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRV 423
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 2.70e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 103.16  E-value: 2.70e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245   23 SFHWFLAWMGLELNTLAIIPIIA-KQHHPRATEATTKYFLIQAAASATVLFSSTINAWSTGTWDIMQLTNEP-------- 93
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALtgglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245   94 ---ACIMLTMALSMKLGLAPLHFWLPEVLQGSSLK-TALIITTWQKLAPMALLyLTHHSLHPTT------LLTMALLSTL 163
Cdd:pfam00361  81 lllLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLI-RRSLLYLPSSpfiqqiLLILAIISML 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  164 IGGWGGLNQTQTRKIMAYSSIAHLGWMasILTLSPNLLLLNLALYLLMTTSAFMTLM-----------YASSKTIKDLTT 232
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYM--LIALGAGTIYGIQAAIFHLLTHGLFSAGlflcagsviyrRVHTRNIRDYGG 237

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 326653245  233 AWTLSPTITALMLILLMSMGGLPPLTGFMPKWLILQ 268
Cdd:pfam00361 238 LAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 15-296 9.18e-24

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 101.56  E-value: 9.18e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245   15 LGTVITMSSFHWFLAWMGLELNTLAIIPIIA-KQHHPRATEATTKYFLIQAAASATVLFSSTINAWSTGTWDIMQLT--- 90
Cdd:TIGR01770 113 LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLlfl 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245   91 -----NEPACIM----LTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAP--------MALLYLTHHSLHPTT 153
Cdd:TIGR01770 193 sngmlNISLLLLgivlILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIfavflrlfLYILFGFSEAWQIFL 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  154 LLtMALLSTLIGGWGGLNQTQTRKIMAYSSIAHLGW----MASILTLSPNLLLLNLALYLLMTTSAFMTLMYASS----- 224
Cdd:TIGR01770 273 AI-IAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiligLLAGTLEGIKAVLFYIFIYALMSLGAFGVLSLLRSykdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 326653245  225 -KTIKDLTTAWTLSPTITALMLILLMSMGGLPPLTGFMPKWLILQDLTTHCLTMTATIMALSALLSLFFYLRL 296
Cdd:TIGR01770 352 iEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
 
Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-323 1.62e-142

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 406.88  E-value: 1.62e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245   1 MNPIMTSLIISSLALGTVITMSSFHWFLAWMGLELNTLAIIPIIAKQHHPRATEATTKYFLIQAAASATVLFSSTINAWS 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  81 TGTWDIMQLTNEPACIMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAPMALLYLTHHSlHPTTLLTMALL 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 161 STLIGGWGGLNQTQTRKIMAYSSIAHLGWMASILTLSPNLLLLNLALYLLMTTSAFMTLMYASSKTIKDLTTAWTLSPTI 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 241 TALMLILLMSMGGLPPLTGFMPKWLILQDLTTHCLTMTATIMALSALLSLFFYLRLSYTTALTLSPTTPQNKFKWRFQPK 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319


                 ...
gi 326653245 321 LKT 323
Cdd:MTH00135 320 QLT 322
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-325 8.40e-139

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 397.27  E-value: 8.40e-139
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245   1 MNPIMTSLIISSLALGTVITMSSFHWFLAWMGLELNTLAIIPIIAKQHHPRATEATTKYFLIQAAASATVLFSSTINAWS 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  81 TGTWDIMQLTNEPACIMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAPMALLYLTHHSLHPTTLLTMALL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 161 STLIGGWGGLNQTQTRKIMAYSSIAHLGWMASILTLSPNLLLLNLALYLLMTTSAFMTLMYASSKTIKDLTTAWTLSPTI 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 241 TALMLILLMSMGGLPPLTGFMPKWLILQDLTTHCLTMTATIMALSALLSLFFYLRLSYTTALTLSPTTPQNKFKWRFQPK 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320


                 ....*
gi 326653245 321 LKTTI 325
Cdd:MTH00112 321 KNTLT 325
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-326 1.23e-135

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 389.28  E-value: 1.23e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245   1 MNPIMTSLIISSLALGTVITMSSFHWFLAWMGLELNTLAIIPIIAKQHHPRATEATTKYFLIQAAASATVLFSSTINAWS 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  81 TGTWDIMQLTNEPACIMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAPMALLYLTHHSLHPTTLLTMALL 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 161 STLIGGWGGLNQTQTRKIMAYSSIAHLGWMASILTLSPNLLLLNLALYLLMTTSAFMTLMYASSKTIKDLTTAWTLSPTI 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 241 TALMLILLMSMGGLPPLTGFMPKWLILQDLTTHCLTMTATIMALSALLSLFFYLRLSYTTALTLSPTTPQNKFKWRFQPK 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320


                 ....*.
gi 326653245 321 LKTTIM 326
Cdd:MTH00070 321 TNNLLS 326
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-343 4.75e-124

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 359.93  E-value: 4.75e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245   1 MNPIMTSLIISSLALGTVITMSSFHWFLAWMGLELNTLAIIPIIAKQHHPRATEATTKYFLIQAAASATVLFSSTINAWS 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  81 TGTWDIMQLTNEPACIMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAPMALLYLTHHSLHPTTLLTMALL 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 161 STLIGGWGGLNQTQTRKIMAYSSIAHLGWMASILTLSPNLLLLNLALYLLMTTSAFMTLMYASSKTIKDLTTAWTLSPTI 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 241 TALMLILLMSMGGLPPLTGFMPKWLILQDLTTHCLTMTATIMALSALLSLFFYLRLSYTTALTLSPTTPQNKFKWRFQPK 320
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNMKMKWQFENT 320

                        330       340
                 ....*....|....*....|...
gi 326653245 321 LKTTIMTATLTLSTLLLPITPMM 343
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPML 343
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-316 1.60e-97

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 292.60  E-value: 1.60e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245   1 MNPIMTSLIISSLALGTVITMSSFHWFLAWMGLELNTLAIIPIIAKQHHPRATEATTKYFLIQAAASATVLFSSTINAWS 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  81 TGTWDIMQLTNEPACIMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAPMALLYLTHHSLHPTTLLTMALL 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 161 STLIGGWGGLNQTQTRKIMAYSSIAHLGWMASILTLSPNLLLLNLALYLLMTTSAFMTLMYASSKTIKDLTTAWTLSPTI 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 326653245 241 TALMLILLMSMGGLPPLTGFMPKWLILQDLTTHCLTMTATIMALSALLSLFFYLRLSYTTALTLSPTTPQNKFKWR 316
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWR 316
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-316 1.03e-94

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 285.32  E-value: 1.03e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245   1 MNPIMTSLIISSLALGTVITMSSFHWFLAWMGLELNTLAIIPIIAKQHHPRATEATTKYFLIQAAASATVLFSSTINAWS 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  81 TGTWDIMQLTNEPACIMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAPMALLYLTHHSLHPTTLLTMALL 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 161 STLIGGWGGLNQTQTRKIMAYSSIAHLGWMASILTLSPNLLLLNLALYLLMTTSAFMTLMYASSKTIKDLTTAWTLSPTI 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 326653245 241 TALMLILLMSMGGLPPLTGFMPKWLILQDLTTHCLTMTATIMALSALLSLFFYLRLSYTTALTLSPTTPQNKFKWR 316
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWR 316
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-326 1.83e-59

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 194.27  E-value: 1.83e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245   1 MNPIMTSLIISSLALGTVITMSSFHWFLAWMGLELNTLAIIPIIAKQHHPRATEATTKYFLIQAAASATVLFSSTINAWS 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  81 tgtwdiMQLTNEPACIMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAPMALLYLTHHSlhpTTLLTMALL 160
Cdd:MTH00160  82 ------LMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINN---NFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 161 STLIGGWGGLNQTQTRKIMAYSSIAHLGWMASILTLSPNLLLLNLALYLLMTTSAFMTLMYASSKTIKDLTTAWTLSPTI 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 241 TALMLILLMSMGGLPPLTGFMPKWLILQDLTTHCLTMTATIMALSALLSLFFYLRLSYTTALTLSpttpqNKFKWRFQPK 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNY-----NKNKWNLKKK 307


                 ....*.
gi 326653245 321 LKTTIM 326
Cdd:MTH00160 308 KNKFSL 313
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 4-317 1.17e-57

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 189.71  E-value: 1.17e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245   4 IMTSLIISSLALGTVITMSSFHWFLAWMGLELNTLAIIPIIAKQHHPRATEATTKYFLIQAAASATVLFSSTINAWSTGT 83
Cdd:MTH00144   4 PSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFS 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  84 WDIMqltnepacIMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAPMALL-YLTHHSLHPTTLLTMALLST 162
Cdd:MTH00144  84 WFSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLsNFLDLYWLAYLLCVISVLSA 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 163 LIGGWGGLNQTQTRKIMAYSSIAHLGWMASILTLSPNLLLLNLALYLLMTTSAFMTLMYASSKTIKDLTTAWTLSPTITA 242
Cdd:MTH00144 156 LVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLS 235

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 326653245 243 LMLILLmSMGGLPPLTGFMPKWLILQDLTTHCLTMTATIMALSALLSLFFYLRLSYTTALTLSPTTPQNKFKWRF 317
Cdd:MTH00144 236 IISLLL-SLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLN 309
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-296 9.45e-49

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 166.49  E-value: 9.45e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245   7 SLIISSLALGTVITMSSFHWFLAWMGLELNTLAIIPIIAKQHHPRATEATTKYFLIQAAASATVLFSSTInawstgTWDI 86
Cdd:MTH00011   9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWSF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  87 MQLTNEPACIMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAPMALLYLTHHSLHPTTLLTMALLSTLIGG 166
Cdd:MTH00011  83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 167 WGGLNQTQTRKIMAYSSIAHLGWMASILTLSPNLLLLNLALYLLMTTSAFMTLMYASSKTIKDLTTAWTLSPTITALMLI 246
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 326653245 247 LLMSMGGLPPLTGFMPKWLILQDLTTHCLTMTATIMALSALLSLFFYLRL 296
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNL 292
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 7-300 1.83e-39

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 141.73  E-value: 1.83e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245   7 SLIISSLALGTVITMSSFHWFLAWMGLELNTLAIIPIIAKQHHPRATEATTKYFLIQAAASATVLFSSTINAWSTgtwdi 86
Cdd:MTH00197   1 FLFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL----- 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  87 mqLTNEPACIMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAPMALLylTHHSLHPTTLLTMALLSTLIGG 166
Cdd:MTH00197  76 --YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGG 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 167 WGGLNQTQTRKIMAYSSIAHLGWMASILTLSPNLLLLNLALYLLMTTSAFMTLMYASSKTIKDLTTAWTLSPTITALMLI 246
Cdd:MTH00197 152 IGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGL 231

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 326653245 247 LLMSMGGLPPLTGFMPKWLILQDLTTHCLTMTATIMALSALLSLFFYLRLSYTT 300
Cdd:MTH00197 232 SFLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKS 285
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 7-296 6.22e-31

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 121.76  E-value: 6.22e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245   7 SLIISSLaLGTVITMSSFHWFLAWMGLELNTLAIIPIIA-KQHHPRATEATTKYFLIQAAASATVLFSSTINAWSTGTWD 85
Cdd:COG1007  106 ALLLFAT-LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLN 184

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  86 IMQLTNE------------PACIMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAPMA----LLYLTHHSL 149
Cdd:COG1007  185 LAGIAAAlaaggansplllLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAallrLLVEAFPGL 264

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 150 HP---TTLLTMALLSTLIGGWGGLNQTQTRKIMAYSSIAHLGWM----ASILTLSPNLLLLNLALYLLMTTSAFMTLMYA 222
Cdd:COG1007  265 AAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLllglAAGTPLGVSAALFYLLAYLFMNLGAFAVILLL 344

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 326653245 223 SSK-----TIKDLTTAWTLSPTITALMLILLMSMGGLPPLTGFMPKWLILQDLTTHCLTMTATIMALSALLSLFFYLRL 296
Cdd:COG1007  345 SRKggeaeEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRV 423
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-296 1.25e-27

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 112.61  E-value: 1.25e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  14 ALGTVITMSSFHWFLAWMGLELNTLAIIPIIA-KQHHPRATEATTKYFLIQAAASATVLFSSTINAWSTGTWDIMQLTNE 92
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKA 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  93 PA------------CIMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAPMA----LLYLTHHSLHPT---T 153
Cdd:PRK05777 193 LAdgsgnsllllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAvllrLLVVAFGGLSEDwqqV 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 154 LLTMALLSTLIGGWGGLNQTQTRKIMAYSSIAHLGWM----ASILTLSPNLLLLNLALYLLMTTSAFMTLMYASSK---- 225
Cdd:PRK05777 273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLlvglAAGTAEGYSAVLFYLLAYLFMTLGAFGVISLLRRKggea 352

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 326653245 226 -TIKDLTTAWTLSPTITALMLILLMSMGGLPPLTGFMPKWLILQDLTTHCLTMTATIMALSALLSLFFYLRL 296
Cdd:PRK05777 353 eSISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 2.70e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 103.16  E-value: 2.70e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245   23 SFHWFLAWMGLELNTLAIIPIIA-KQHHPRATEATTKYFLIQAAASATVLFSSTINAWSTGTWDIMQLTNEP-------- 93
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALtgglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245   94 ---ACIMLTMALSMKLGLAPLHFWLPEVLQGSSLK-TALIITTWQKLAPMALLyLTHHSLHPTT------LLTMALLSTL 163
Cdd:pfam00361  81 lllLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLI-RRSLLYLPSSpfiqqiLLILAIISML 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  164 IGGWGGLNQTQTRKIMAYSSIAHLGWMasILTLSPNLLLLNLALYLLMTTSAFMTLM-----------YASSKTIKDLTT 232
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYM--LIALGAGTIYGIQAAIFHLLTHGLFSAGlflcagsviyrRVHTRNIRDYGG 237

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 326653245  233 AWTLSPTITALMLILLMSMGGLPPLTGFMPKWLILQ 268
Cdd:pfam00361 238 LAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 15-296 9.18e-24

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 101.56  E-value: 9.18e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245   15 LGTVITMSSFHWFLAWMGLELNTLAIIPIIA-KQHHPRATEATTKYFLIQAAASATVLFSSTINAWSTGTWDIMQLT--- 90
Cdd:TIGR01770 113 LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLlfl 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245   91 -----NEPACIM----LTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAP--------MALLYLTHHSLHPTT 153
Cdd:TIGR01770 193 sngmlNISLLLLgivlILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIfavflrlfLYILFGFSEAWQIFL 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  154 LLtMALLSTLIGGWGGLNQTQTRKIMAYSSIAHLGW----MASILTLSPNLLLLNLALYLLMTTSAFMTLMYASS----- 224
Cdd:TIGR01770 273 AI-IAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiligLLAGTLEGIKAVLFYIFIYALMSLGAFGVLSLLRSykdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 326653245  225 -KTIKDLTTAWTLSPTITALMLILLMSMGGLPPLTGFMPKWLILQDLTTHCLTMTATIMALSALLSLFFYLRL 296
Cdd:TIGR01770 352 iEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-296 3.61e-23

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 98.56  E-value: 3.61e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  13 LALGTVITMSSFHWFLAWMGLELNTLAIIPIIA-KQHHPRATEATTKYFLIQAAASATVLFSSTINAWSTGTWDI--MQL 89
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIAqNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLsyINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  90 TNEPAC-----------IMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAPMALLYLThhSLHPTTLLTMA 158
Cdd:MTH00196  82 VLNSGQsfssvsvpigyLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSI--GLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 159 LLSTLIGGWGGLNQTQTRKIMAYSSIAHLG---WMASI-LTLSPNLLLLNLALYLLMTTSAFMTLMYASSKT--IKDLTT 232
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGfvlWGIEIgSFESIQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 326653245 233 AWTLSPTITALMLILLMSMGGLPPLTGFMPKWLILQDLTTHCLTMTATIMALSALLSLFFYLRL 296
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 6-296 4.23e-23

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 99.32  E-value: 4.23e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245   6 TSLIISSLALGTVITMSSFHWFLAWMGLELNTLAIIPIIA-KQHHPRATEATTKYFLIQAAASATVLFSSTINAWSTGTW 84
Cdd:MTH00199  99 SPILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGET 178

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  85 DIMQ----LTNEPACIMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAPMALLYlthhSLHPTT--LLTMA 158
Cdd:MTH00199 179 SIQGinsiLTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILV----QIGPVTnvVLICA 254

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 159 LLSTLIGGWGGLNQTQTRKIMAYSSIAHLGW----MASILTLSPNLLLLNLALYLLMTTSAFMTLMyaSSKTIKDLTTAW 234
Cdd:MTH00199 255 VLSIIYGAIGALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFSIIL--SLKLTKGLIVEV 332

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 326653245 235 T-LS---PTITALMLILLMSMGGLPPLTGFMPKWLILQDLTTHCLTMTATIMALSALLSLFFYLRL 296
Cdd:MTH00199 333 SgLSrknPVIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 27-301 2.07e-20

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 91.36  E-value: 2.07e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  27 FLAWMGLELNTLAIIPIIAKQHHPRATEATTKYFLIQAAASATVLFSSTINAWSTGTWDIMQLTN----------EPACI 96
Cdd:COG0651  130 FNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAArlaeldpgllLAAFA 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  97 MLTMALSMKLGLAPLHFWLPE-----------VLQGSSLKTAL--IITTWQKLAPMALLYLTHhslhpTTLLTMALLSTL 163
Cdd:COG0651  210 LLLVGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGADPALFLG-----TLLLVLGLLTML 284

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 164 IGGWGGLNQTQTRKIMAYSSIAHLGWMA---SILTLSPNLLLLNLALYLLMTTSA-FMT----LMYASSKTIKDLTTAWT 235
Cdd:COG0651  285 VGALGALAQRDLKRLLAYSSVSQIGYILlglGLGTPLGLAGALFHLLNHALAKALlFLAagaiERATGTRDLDKLGGLGK 364

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 326653245 236 LSPTITALMLILLMSMGGLPPLTGFMPKWLILQDLTTHCLTMTATIMALSALLSLFFYLRLSYTTA 301
Cdd:COG0651  365 RMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRIFGRAQ 430
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 13-299 9.73e-18

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 84.14  E-value: 9.73e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  13 LALGTVITMSSFHWFLAWMGLELNTLAIIPIIAKQHHPRAT---------EATTKYFLIQAAASATVLFSS------TIN 77
Cdd:MTH00198 197 VGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCalyfgfTGN 276

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  78 AWSTGTwdIMQLTNEPACIML----------TMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLapMALLYLTHH 147
Cdd:MTH00198 277 EGMLGT--ILSATLETTNIELrqgslgylfiTVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSL 352

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 148 SLHPTTLLTMALLSTLIGGWGGLNQTQTRKIMAYSSIAHLGWM---ASILTLSPNLLLLNLALYLLMTTSAFMTLM---- 220
Cdd:MTH00198 353 VITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFIligVSAGTYESLQASWTYAVTYLVSALASFTVIctle 432

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 221 ------------------YASSKTIKDLTTAWTLSPTITALMLILLMSMGGLPPLTGFMPKWLILQDLTTHCLTMTATIM 282
Cdd:MTH00198 433 efgtrtptsrqrdgsfgnYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLSIY 512

                        330       340
                 ....*....|....*....|....
gi 326653245 283 ALSALL-------SLFFYLRLSYT 299
Cdd:MTH00198 513 YLVALFaiictciSAFYYIRIVAT 536
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-263 5.36e-10

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 60.40  E-value: 5.36e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  51 RATEATTKYFLIQAAASATVLFS-STINAWSTGTWDI---------MQLTNEPAC----IMLTMALSMKLGLAPLHFWLP 116
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVYGfSWLYGLSGGEIELqeivnglinTQMYNSPGIsialIFITVGIGFKLSLAPFHQWTP 238

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 117 EVLQGSSLKTALIITTWQKLAPMALLYLTHHSLHPTT-------LLTMALLSTLIGGWGGLNQTQTRKIMAYSSIAHLGW 189
Cdd:CHL00049 239 DVYEGSPTPVVAFLSVTSKVAASALATRIFDIPFYFSsnewhllLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGY 318

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 190 M-----ASILTLSPNLLLLNLALYLLMTTSAFMTLMYASSKT----IKDLTTAWTLSPTITALMLILLMSMGGLPPLTGF 260
Cdd:CHL00049 319 ViigiiVGDSNDGYASMITYMLFYIFMNLGTFACIVLFGLRTgtdnIRDYAGLYTKDPFLALSLALCLLSLGGIPPLAGF 398


                 ...
gi 326653245 261 MPK 263
Cdd:CHL00049 399 FGK 401
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 6.65e-09

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 56.98  E-value: 6.65e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  50 PRATEATTKYFLIQAAASATVLFSST----INAWSTGTWDIMQLTNEPACIMLTMAL-------SMKLGLAPLHFWLPEV 118
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYGSSllygLSGGSTQLSAIALALITSPSLGLALALvfviagiAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 119 LQGSSLKTALIITTWQKLAPMAL---LYLTHHSLHPT---TLLT-MALLSTLIGGWGGLNQTQTRKIMAYSSIAHLGW-- 189
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAGFALairLLVTAFPSFDEqwkLLFTaLAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFvm 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 190 --MASILTLSPNLLLLNLALYLLMTTSAFMTLMYASSKT----IKDLTTAWTLSPTITALMLILLMSMGGLPPLTGFMPK 263
Cdd:PRK02504 317 igLVAGTEAGYASMVFYLLAYLFMNLGAFACVILFSLRTgtdqISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGK 396
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-298 9.32e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 56.43  E-value: 9.32e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  33 LELNTLAIIPIIAKQHHPRATEATTKYFLIQAAASATVLFSSTINAWSTGTWDIMQLTNEP--------ACIMLTMALSM 104
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGALaenptvvtAFGFVLLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 105 KLGLAPLHFWLPEVLQG-SSLKTALIITTWQKLAPMALLYLTHHSLHPTT---------LLTMALLSTLIGGWGGLNQTQ 174
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIRIYFTVFGGDFrfalglgwlLAVLALLSMLVGSLAALGQDD 294

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 175 TRKIMAYSSIAHLGWM----ASILTLSPNLLLLNLALYLLMTTSAFMT---LMYAS-SKTIKDLTTAWTLSPTITALMLI 246
Cdd:PRK08375 295 VKRVLAYSTVSQMGYIllglALLTPLALAAGLLHLLHHALMKGALFLAagaIEVTYgTRRLSELSGLGRRMPLTAAAFAV 374

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 326653245 247 LLMSMGGLPPLTGFMPKWLILQDLTTHCLTMTATIMALSALLSLFFYLRLSY 298
Cdd:PRK08375 375 ASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 8-266 2.84e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 55.10  E-value: 2.84e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245   8 LIISSLALGTVITMSSFHWFLAwmgLELNTLAIIPIIAKQHH-PRATEATTKYFLIQAAASATVLFSSTINAWSTGTWDI 86
Cdd:PRK08376 128 LLLELGMLGMAITGDLFNFFVF---LEIMSIASYALVAFRNDtWEAIEAGIKYMFVGSLASSMVLLGIALLYGQYGTLNM 204

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  87 ----------MQLTNEPACIMLTMALSMKLGLAPLHFWLPEVLQG--SSLKTALIITTWQKLAPMA--LLYLTHHSLHPT 152
Cdd:PRK08376 205 aylavkmsenPTVVAKIALALFIAGLAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALArvLFSIYGPAINLA 284

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 153 TL----LTMALLSTLIGGWGGLNQTQTRKIMAYSSIAHLGWM---ASILTLSPNLLLLNLALYLLMTTSAFMTLMYASSK 225
Cdd:PRK08376 285 TVgwviIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMllgLGVGLAALGDPAMASYGEIALAGGIYHIVNHALYK 364

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 326653245 226 TIKDLTTA--------WTLS---------PTITALMLILLMSMGGLPPLTGFMPKWLI 266
Cdd:PRK08376 365 ALLFLTAGaviyetgtRNLNelgglartmPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 5-299 8.52e-08

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 53.85  E-value: 8.52e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245   5 MTSLIISSLALGTVITMSSFHWFLAWMGLELNTLAIIPIIAKqhhpRATEATTKYFLIQAAASATVLFSSTINAWSTGTW 84
Cdd:PRK08668 102 MFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTF 177

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  85 DIMQLTNE-----------PACIMLTMALSMKLGLAPLHFWLPE-----------VLQGSSLKT-ALIITTWQKLAPMAL 141
Cdd:PRK08668 178 DFADISQGlindtstgfalIVFLFLLAFGVAKAGIFPLHVWAPDayseapqsfsaVLSGQLSKLgAYGFLLVLYVLPGTK 257

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 142 LYLTHHSLHPTTLLTMAL-----LSTLIGGWGGLNQTQTRKIMAYSSIAHLGW-------MASILTLSPNLLLLNLALYL 209
Cdd:PRK08668 258 LFSEFGTYRGVPLFNYILawlgnISIIVGTLMAILQEDIKKLIAYSSVANGGYilvglglGTSLGFAGGLFHVFNHALFK 337

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 210 LMTTSAFMTLMYASSKT-IKDLTTAWTLSPTITALMLILLMSMGGLPPLTGFMPKWLILQDLTTHCLTMTATIMALSALL 288
Cdd:PRK08668 338 GLFFLIFAAVIYRTGTTkISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIG 417

                        330
                 ....*....|.
gi 326653245 289 SLFFYLRLSYT 299
Cdd:PRK08668 418 SFLYVFRPLAG 428
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 72-303 1.23e-06

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 50.08  E-value: 1.23e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  72 FSSTINAWSTGTWDIMQLTnepaCIMLT---MALSMKLGLaplHFWLPEVLQGSSLKTALIITTWQKLAPMALLYLTHHS 148
Cdd:MTH00020 194 FSSVFNMVVSAPSSDITLI----CLFLFigaVGKSAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPL 266

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 149 LHPTTLLTMAL-----LSTLIGGWGGLNQTQTRKIMAYSSIAHLGWMASILTLSPNLLLLNLAlyllMTTSAFMTLMYAS 223
Cdd:MTH00020 267 FEQAPLALIIVtivgsLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGLSHYSISLFHL----MNHAFFKALLFLS 342

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 224 SKTI-------KDLTTAWTLS---PTITALMLILLMSMGGLPPLTGFMPKWLILQ-DLTTHCLTMTATIMALSALLSLFF 292
Cdd:MTH00020 343 AGSVihalsdeQDMRKMGGLIsflPLTYIFFLIGSLSLMGFPYLTGFYSKDLILElAFGQYYLIFAYWLGCFSALLTAFY 422

                        250
                 ....*....|.
gi 326653245 293 YLRLSYTTALT 303
Cdd:MTH00020 423 SIRLIYLTFLS 433
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 8-267 6.32e-06

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 47.77  E-value: 6.32e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245   8 LIISSLALGTVITMSSFHWFLAWmglELntlAIIP---IIAKQHHPRATEATTKYFLIQAAASATVLFSSTINAWSTG-- 82
Cdd:COG1008  118 LLLEAGMIGVFLALDLFLFYVFW---EL---MLIPmyfLIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGal 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  83 TWDIMQLTNEP--------ACIMLTMALSMKLGLAPLHFWLPE-----------VLQGSSLKTA------LIITtwqkLA 137
Cdd:COG1008  192 TFDIAELAAAPlpltaqllLFLAFFIAFAVKVPMFPFHTWLPDahveaptagsvLLAGVLLKMGgygllrFALP----LF 267

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 138 PMALLYLThhslhpTTLLTMALLSTLIGGWGGLNQTQTRKIMAYSSIAHLGWM----ASILTLSPNLLLLNLALYLLMTT 213
Cdd:COG1008  268 PEASAYFA------PLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVllgiFALNPLGLQGAVLQMVSHGLITA 341

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 326653245 214 SAFMT--LMYASSKT--IKDLTTAWTLSPTITALMLILLMSMGGLPPLTGFMPKWLIL 267
Cdd:COG1008  342 ALFLLvgVLYDRTHTrdIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVL 399
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 8-268 7.82e-06

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 47.24  E-value: 7.82e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245    8 LIISSLALGTVITMSSFHWFLAWMGLELNTLAIIPIIAKQHHPRATeatTKYFLIQAAASATVLFSSTINAWSTG-TWDI 86
Cdd:TIGR01972 113 LLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGGPNRIYAA---MKFFLYTLAGSLLMLLAILGLYFLGGgTFDL 189

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245   87 MQLTNEP--------ACIMLTMALSMKLGLAPLHFWLPEV-LQGSSLKTALIITTWQKLAPMALLYL-------THHSLH 150
Cdd:TIGR01972 190 LELLNLPlpfgvqtwLFLAFFIAFAVKVPLFPLHTWLPDAhVEAPTAGSVILAGVLLKMGTYGFLRFnlplfpdASLYFA 269

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  151 PTtLLTMALLSTLIGGWGGLNQTQTRKIMAYSSIAHLGWM----ASILTLSPNLLLLNLALYLLMTTSAFMT--LMY--A 222
Cdd:TIGR01972 270 PV-LAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVllgiFSFNELGISGAVFQMISHGLITAALFLLvgVLYerA 348

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 326653245  223 SSKTIKDLTTAWTLSPTITALMLILLMSMGGLPPLTGFMPKWLILQ 268
Cdd:TIGR01972 349 HTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILL 394
PRK12650 PRK12650
DUF4040 family protein;
4-263 1.35e-05

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 46.96  E-value: 1.35e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245   4 IMTSLIISSLALgtVITMSSFHWFLAWmglELNTLAIIPIIAKQHhPRATEATTKYFLIQAAASATVLFSSTINAWSTGT 83
Cdd:PRK12650 115 LMTAFMAAMLLL--VLADDVVVLFVAW---ELVSLASFFLIARSG-SGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGT 188

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  84 WDIMQLTNEPA-----------CIMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAPMALLYLTHHSLHPT 152
Cdd:PRK12650 189 TSLSGILHSDVwaekpglttvvAVLIAVAAFTKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHDV 268

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 153 T-----LLTMALLSTLIGGWGGLNQTQTRKIMAYSSIAHLGWM-ASI---LTLSPNLLLLNLALYLLMTTSAFMTL---- 219
Cdd:PRK12650 269 AvwnwlLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIvATIgvgTPFALTAAVVHTLAHALFKSSLFMLIgvvd 348

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....
gi 326653245 220 MYASSKTIKDLTTAWTLSPTITALMLILLMSMGGLPPLTGFMPK 263
Cdd:PRK12650 349 HQAGTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSK 392
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
139-296 5.33e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 44.94  E-value: 5.33e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 139 MALLYLTHHSLHPTTLLTMALLSTLIGGWGGLNQTQTRKIMAYSSIAHLGWMASiLTLSPNLLLLNLALYLLMTTSAFMT 218
Cdd:PRK12663 260 FTLLFPQERELLHPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILL-GLALGTPAGINGAIFYLVHDMVVKT 338

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 219 LMYASSKTIKDLTTAWTLS---------PTITALMLILLMSMGGLPPLTGFMPKWLILQDLTTHCLTMTATIMALSALLS 289
Cdd:PRK12663 339 ALFLIAGSLVRLTGYRSLQylgglyrkePLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLIT 418


                 ....*..
gi 326653245 290 LFFYLRL 296
Cdd:PRK12663 419 MYSLFRI 425
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 95-267 5.83e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 44.72  E-value: 5.83e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  95 CIMLtmALSMKLGLAPLHFWLpevLQGSSLKTALIITTWQKLAPMALLYLTHHSLHP--------------TTLLTMALL 160
Cdd:PRK12662 214 FIMV--GLFIKAALFPFHKWL---IQAYSEAPSFISVFFSGTSTKVMIYLIIRIVYDvfkanfvfttlpfnNVFMILAAL 288

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 161 STLIGGWGGLNQTQTRKIMAYSSIAHLGW---MASILTLSPNLLLLNLALYLLMTTSA-FMTLMYASSK----TIKDLTT 232
Cdd:PRK12662 289 AIVFGSVLAILSKDIKRIFAYSSISHIGYiilAVSLNTYYGLAAAVAYIVNHSIVKSAlFMVSGSISYHfgttKLEDCLN 368

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 326653245 233 AWTLSPTITALMLILLMSMGGLPPLTGFMPKWLIL 267
Cdd:PRK12662 369 LWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 28-268 8.05e-05

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 44.15  E-value: 8.05e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  28 LAWMGLELNTLAIIPIIAKQHHPRATEATTKYFLIQAAASA-----TVLFSSTINAWSTGTWDIMQLTN--------EPA 94
Cdd:PRK06458 132 LMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAfalfgTILVYANAATVMGDGEMAILWTEllkhasllDPT 211

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  95 CIMLTMALSM-----KLGLAPLHFWLPE-----------VLQGSSLKTALIITTWQKLapmaLLYLTHHSLHPTTLL-TM 157
Cdd:PRK06458 212 LMKLAFVFLLigfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALYAVLRYYI----LIDAAIGSDFPGRLLlIF 287

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 158 ALLSTLIGGWGGLNQTQTRKIMAYSSIAHLGWMA---SILTLSPNLLLLNLALYLLMTTSAFM-----TLMYASSKTIKD 229
Cdd:PRK06458 288 GLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAfalGIGGPLGIFAALLHMLNHSLTKSAIFfasgnVLQKYGTRDINV 367

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 326653245 230 LTTAWTLSPTITALMLILLMSMGGLPPLTGFMPKWLILQ 268
Cdd:PRK06458 368 IRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILT 406
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 96-268 1.19e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 43.80  E-value: 1.19e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  96 IMLTMALSMKLGLAPLHFWLPEVL-QGSSLKTALIITTWQKLAPMALLYlTHHSLHP-----TTLLTMALLSTLIGGWGG 169
Cdd:PRK12665 213 AVLLVAFGIKAAVFPLSFWLPDSYpTAPAPVTAVFAGLLTKVGVYAIIR-THTLLFPgggldTLLMVVALLTMVVGILGA 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 170 LNQTQTRKIMAYSSIAHLGWM----ASILTLSPNLLLLNLALYLLMTTSAFMTL----MYASSKTIKDLTTAWTLSPTIT 241
Cdd:PRK12665 292 IAQSDIKRLLSFTLVSHIGYMvfgiALSTVAGLSGAIYYVAHHITVQTTLFLVVglieRQAGSSSLRRLGGLAKASPLLA 371

                        170       180
                 ....*....|....*....|....*..
gi 326653245 242 ALMLILLMSMGGLPPLTGFMPKWLILQ 268
Cdd:PRK12665 372 VLFFVPALNLGGIPPFSGFIGKVALLE 398
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 111-277 9.30e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 41.10  E-value: 9.30e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 111 LHFWLPEVLQGSSLKTALIITTWQKLAPMALLYLTHHSLH--PTTLLTMALLSTLIGGWG---GLNQTQTRKIMAYSSIA 185
Cdd:MTH00032 244 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEkaPLTLLIITIFGALTAFFAatvGLVQNDLKKVIAYSTCS 323

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 186 HLGWMASILTLSPNLLLLNLALyllMTTSAFMTLMYASSKTI--------KDLTTAWTLSPTIT---ALMLILLMSMGGL 254
Cdd:MTH00032 324 QLGYMVLIIGIEGSHNVGLFHL---VNHAFFKALLFLSAGSVihsttvdeQDMRKMGGLIHSIPftyTMMLIGSFSIMGL 400

                        170       180
                 ....*....|....*....|...
gi 326653245 255 PPLTGFMPKWLILQdLTTHCLTM 277
Cdd:MTH00032 401 PYLTGFYSKDLILE-LTYSGRNM 422
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-324 1.15e-03

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 36.47  E-value: 1.15e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 326653245  291 FFYLRLSYTTALTLSPTTPQNKFKWRFQPKLKTT 324
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTL 34
PRK12646 PRK12646
DUF4040 family protein;
93-291 1.46e-03

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 40.51  E-value: 1.46e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  93 PACIMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAPMALLY-----LTHHSLHPTTLLTMALLSTLIGGW 167
Cdd:PRK12646 211 PMIFMFLLGAFTKSAQFPFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLFrftplLGLSNMYIYIVTFVGLITMLFGSI 290

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 168 GGLNQTQTRKIMAYSSIAHLGW-MASILTLSPNLLLLNLALYLLMTTSAFMTLMY---------------------ASSK 225
Cdd:PRK12646 291 TALKQWDLKGILAYSTISQLGMiMAMVGIGGGYAQHQQDAIASIYVFVLFAALFHlmnhaifkcalfmgvgiidheAGTR 370

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 326653245 226 TIKDLTTAWTLSPTITALMLILLMSMGGLPPLTGFMPKWLILQDLTT------HCLTMTATIMALSALLSLF 291
Cdd:PRK12646 371 DIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLDALTQtgqlsqFSLISMIIIVFIGVIASIF 442
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 27-188 1.87e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 40.01  E-value: 1.87e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  27 FLAWmglELNTLAIIPIIAKQHHPRATEATTKYFLIQAAASATVLFSSTINAWSTG--TWDIMQLTNEPACIMLTM---- 100
Cdd:PRK12561 113 FLMW---ELELVPVYLLISIWGGQKRLYAATKFILYTALASIFILVAGLALALSGDtfTFDLAELGAKSYPLALELllya 189

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 101 ----ALSMKLGLAPLHFWLPE-----------VLQGSSLKT---ALIITTWQKLaPMALLYLThhslhpTTLLTMALLST 162
Cdd:PRK12561 190 gfliAFGVKLPIFPLHTWLPDahgeasapvsmILAGVLLKMggyALIRFNVQML-PDAHVYFA------PALAILGVVNI 262

                        170       180
                 ....*....|....*....|....*.
gi 326653245 163 LIGGWGGLNQTQTRKIMAYSSIAHLG 188
Cdd:PRK12561 263 IYGALNAFAQDNVKRRLAYSSVSHMG 288
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 74-300 3.36e-03

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 39.37  E-value: 3.36e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  74 STINAWSTGTWDIMQLTnePACIMLTMALSMKLGLAPLHFWLPEVLQG----SSL------KTA---LIIttwqKLAPma 140
Cdd:COG1009  195 SELLAAAPTILSSPLLT--LILLLLLLGAFGKSAQFPLHFWLPDAMEGptpvSALlhaatmVKAgvyLLA----RLSP-- 266

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 141 LLYLTHHSLhpTTLLTMALLSTLIGGWGGLNQTQTRKIMAYSSIAHLGWM----------ASIltlspnllllnlalYLL 210
Cdd:COG1009  267 LFALSPVWL--TVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMflalgvgayvAAL--------------FHL 330

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 211 MTTSAFMTLMY---------ASSKTIKDLTTAWTLSPTITALMLILLMSMGGLPPLTGFMPKWLILQD-LTTHCLTMTAT 280
Cdd:COG1009  331 LTHAFFKALLFlgagsvihaTGTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAaLEAGGLGPLLL 410

                        250       260
                 ....*....|....*....|.
gi 326653245 281 IMA-LSALLSLFFYLRLSYTT 300
Cdd:COG1009  411 AVAlLGAFLTAFYSFRLFFLV 431
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
 94-300 3.43e-03

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 39.19  E-value: 3.43e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245   94 ACIMLTMALSMKLGLAPLHFWLPEVLQGSSLKTALIITTWQKLAPMALLYLTH--HSLHPTTLLTMALLST---LIGGWG 168
Cdd:TIGR01974 215 ICLLLFIGAMGKSAQLPLHTWLPDAMEGPTPVSALIHAATMVTAGVYLVARTSplFELSPTALYLVTIIGAitaLFAATV 294

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  169 GLNQTQTRKIMAYSSIAHLGWMasilTLSPNLLLLNLALYLLMTTSAFMTLMYASS----------KTIKDLTTAWTLSP 238
Cdd:TIGR01974 295 ALVQNDIKRILAYSTMSQLGYM----FLALGVGAYAAAIFHLMTHAFFKALLFLGAgsvihamhheQDIRKMGGLRKKMP 370

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 326653245  239 TITALMLILLMSMGGLPPLTGFMPKWLILQD-LTTHCLTMTATIMALSALLSLFFYLRLSYTT 300
Cdd:TIGR01974 371 VTYITFLIGSLALIGFPGFAGFFSKDLILEAaFASGTHSFLFVAGLIGAFLTAFYSFRLIFMV 433
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 18-190 4.15e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 38.97  E-value: 4.15e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  18 VITMSSFHWFLA--WMGLELNTLAIIPIIAKQHHPRATEATTKYFLIQAAA------SATVLFSSTINAWSTGTWDIMQL 89
Cdd:PRK08676 114 VITFAFFSDNLAlfWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNWTEL 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  90 TNEPACI---MLTMA-------LSMKLGLAPLHFWLPEV-LQGSSLKTALIITTWQKLAPMALLYLTH-------HSLHP 151
Cdd:PRK08676 194 AAHASLLspsVLGASflfifigFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqsgaAEQFS 273

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 326653245 152 TTLLTMALLSTLIGGWGGLNQTQTRKIMAYSSIAHLGWM 190
Cdd:PRK08676 274 NVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLM 312
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
38-266 5.33e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 38.53  E-value: 5.33e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  38 LAIIPI---IAKQHHPRATEATTKYFLIQAAASATVLFSSTINAWSTGT----WDIMQLTNEPA------CIMLTMALSM 104
Cdd:PRK06473 138 LELIPLyllIAIWGGQRRGYAATKFLLYTAISGILILVSFLGLVWLSGAssfdYEPLRSHTLPLstqlllLAPILVGFGI 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 105 KLGLAPLHFWLPEV-LQGSSLKTALIITTWQKLAPMALL------YLTHHSLHPTTLLTMALLSTLIGGWGGLNQTQTRK 177
Cdd:PRK06473 218 KIPLVPFHTWLPDAhVEASTPVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKK 297

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 178 IMAYSSIAHLGW--MASILTLSPNLLLLNLALYLLMTTSAFMTLM----YASSKT-----IKDLTTAWTLSPTITALMLI 246
Cdd:PRK06473 298 MVAYSSIGHMGYilLAAAAATPLSILAAVFQMISHGLISALLFLLvgvvYKKTGSrdvdvLRGLLNPERGLPITGSLMIL 377

                        250       260
                 ....*....|....*....|
gi 326653245 247 LLMSMGGLPPLTGFMPKWLI 266
Cdd:PRK06473 378 GVMASAGIPGMVGFIAEFLV 397
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 56-296 5.45e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 38.39  E-value: 5.45e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  56 TTKYFLIQAAASATVLFSSTINAWSTGTWD-------IMQLTNEPACIMLTMAL------SMKLGLAPLHFWLPevlqGS 122
Cdd:PRK07691 160 SIKYVLINVVSSAFFVVAVAILYSVVGTLNmadisvkIAELSAGQTGLITVVAIlflfvfATKAGLFPLYFWLP----GS 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 123 -SLKTALIITTWQKL-------APMALLYLTHHSLHP---TTLLTMALLSTLIGGWGGLNQTQTRKIMAYSSIAHLGWM- 190
Cdd:PRK07691 236 yYAPPIAIAALFGALltkvgvyAIARTFTLFFSHDTSfthYLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVIl 315

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 191 ---ASILTLSPNLLLLNLALYLLMTTSAFMT--LMYASSKT--IKDLTTAWTLSPTITALMLILLMSMGGLPPLTGFMPK 263
Cdd:PRK07691 316 vgvAMMTESGMIGAIYYLIHDMIVKAALFLLigIMIKITGTtdLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGK 395

                        250       260       270
                 ....*....|....*....|....*....|...
gi 326653245 264 WLILQDLTTHCLTMTATIMALSALLSLFFYLRL 296
Cdd:PRK07691 396 FFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKI 428
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 107-268 5.57e-03

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 38.65  E-value: 5.57e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 107 GLAPLHFWLPEV-LQGSSLKTALIITTWQKLAPMALLYLTHHSLHP-----TTLLTMALLSTLIGGWGGLNQTQTRKIMA 180
Cdd:PRK08042 195 GIIPLHGWVPQAhANASAPAAALFSTVVMKIGLLGILTLSLLGGNAplwwgVALLVLGMITAFVGGLYALMEHNIQRLLA 274

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 181 YSSIAHLGWM----------ASILTLSPNLLLLNLALYLLMTTSAFMTLMYASS---------KTIKDLTTAWTLSPTIT 241
Cdd:PRK08042 275 YHTLENIGIIllglgagvtgIALEQPALIALGLVGGLYHLLNHSLFKSVLFLGAgsvwfrtghRDIEKLGGIGKKMPVIS 354

                        170       180
                 ....*....|....*....|....*..
gi 326653245 242 ALMLILLMSMGGLPPLTGFMPKWLILQ 268
Cdd:PRK08042 355 IAMLVGLMAMAALPPLNGFAGEWVIYQ 381
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 80-287 7.34e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 38.37  E-value: 7.34e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245  80 STGTWDIMQLTNEP----------ACImLTMALSmKLGLAPLHFWLPEVLQGSSLKTALI---------ITTWQKLAPMa 140
Cdd:PRK12644 183 AAGTYRLSELLADPptgpavsvavVLI-LVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLhaaamvkagIYLVARLAPG- 259

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 326653245 141 llYLTHHSLHPTtLLTMALLSTLIGGWGGLNQTQTRKIMAYSSIAHLGWMASILTL----SPNLLLLNLALYLLMTTSAF 216
Cdd:PRK12644 260 --FADVPVWRPT-VLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIgtrdAALAGLAMLLAHALFKAALF 336

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 326653245 217 MT--LMYASSKT--IKDLTTAWTLSPTITALMLILLMSMGGLPPLTGFMPKWLILQDLTTHCLTMTATIMALSAL 287
Cdd:PRK12644 337 LVvgIIDHSTGTrdIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAKEAALEAVLHDGALGPAGPVVLAGI 411
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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