NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|365812687|gb|AEX00171|]
View 

cytochrome b, partial (mitochondrion) [Chelonoidis sp. 8145]

Protein Classification

cytochrome b family protein( domain architecture ID 581032)

cytochrome b family protein such as formate dehydrogenase subunit gamma or cytochrome b, a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.

Gene Ontology:  GO:0046872|GO:0016491

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Cytochrome_b_N super family cl23723
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-137 1.13e-98

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


The actual alignment was detected with superfamily member MTH00119:

Pssm-ID: 474033 [Multi-domain]  Cd Length: 380  Bit Score: 287.95  E-value: 1.13e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365812687   1 MATNLRKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLI 80
Cdd:MTH00119   1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 365812687  81 RNMHANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGILLLLLVMATAFVGYVLPWG 137
Cdd:MTH00119  81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWG 137
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-137 1.13e-98

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 287.95  E-value: 1.13e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365812687   1 MATNLRKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLI 80
Cdd:MTH00119   1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 365812687  81 RNMHANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGILLLLLVMATAFVGYVLPWG 137
Cdd:MTH00119  81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWG 137
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-137 5.08e-56

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 173.32  E-value: 5.08e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365812687  10 PMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMHANGAS 89
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 365812687  90 IFFMCIYLHIGRGLYYGSY--LYKETWNTGILLLLLVMATAFVGYVLPWG 137
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWG 130
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-137 1.63e-49

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 156.39  E-value: 1.63e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365812687   19 FIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIFFMCIYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 365812687   99 IGRGLYYG--SYLYKETWNTGILLLLLVMATAFVGYVLPWG 137
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWG 121
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-137 4.39e-49

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 161.11  E-value: 4.39e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365812687  12 IKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIF 91
Cdd:COG1290   20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 365812687  92 FMCIYLHIGRGLYYGSylYKE----TWNTGILLLLLVMATAFVGYVLPWG 137
Cdd:COG1290  100 FAAVYLHMFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWD 147
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-137 1.13e-98

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 287.95  E-value: 1.13e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365812687   1 MATNLRKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLI 80
Cdd:MTH00119   1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 365812687  81 RNMHANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGILLLLLVMATAFVGYVLPWG 137
Cdd:MTH00119  81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWG 137
CYTB MTH00100
cytochrome b; Provisional
 3-137 1.80e-92

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 271.90  E-value: 1.80e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365812687   3 TNLRKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRN 82
Cdd:MTH00100   2 TNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRY 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 365812687  83 MHANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGILLLLLVMATAFVGYVLPWG 137
Cdd:MTH00100  82 LHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWG 136
CYTB MTH00131
cytochrome b; Provisional
 3-137 3.30e-92

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 271.53  E-value: 3.30e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365812687   3 TNLRKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRN 82
Cdd:MTH00131   2 ASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRN 81

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 365812687  83 MHANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGILLLLLVMATAFVGYVLPWG 137
Cdd:MTH00131  82 LHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWG 136
CYTB MTH00074
cytochrome b; Provisional
 1-137 2.09e-91

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 269.24  E-value: 2.09e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365812687   1 MATNLRKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLI 80
Cdd:MTH00074   1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 365812687  81 RNMHANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGILLLLLVMATAFVGYVLPWG 137
Cdd:MTH00074  81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWG 137
CYTB MTH00191
cytochrome b; Provisional
 5-137 9.41e-87

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 257.15  E-value: 9.41e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365812687   5 LRKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMH 84
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 365812687  85 ANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGILLLLLVMATAFVGYVLPWG 137
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWG 133
CYTB MTH00156
cytochrome b; Provisional
 12-137 6.52e-82

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 244.31  E-value: 6.52e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365812687  12 IKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIF 91
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 365812687  92 FMCIYLHIGRGLYYGSYLYKETWNTGILLLLLVMATAFVGYVLPWG 137
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWG 126
CYTB MTH00034
cytochrome b; Validated
 5-137 4.34e-81

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 243.07  E-value: 4.34e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365812687   5 LRKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMH 84
Cdd:MTH00034   4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 365812687  85 ANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGILLLLLVMATAFVGYVLPWG 137
Cdd:MTH00034  84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWG 136
CYTB MTH00145
cytochrome b; Provisional
 1-137 6.41e-81

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 242.50  E-value: 6.41e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365812687   1 MATNLRKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLI 80
Cdd:MTH00145   1 MLSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 365812687  81 RNMHANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGILLLLLVMATAFVGYVLPWG 137
Cdd:MTH00145  81 RSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWG 137
CYTB MTH00016
cytochrome b; Validated
 1-137 7.42e-79

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 237.27  E-value: 7.42e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365812687   1 MATNLRKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLI 80
Cdd:MTH00016   1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 365812687  81 RNMHANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGILLLLLVMATAFVGYVLPWG 137
Cdd:MTH00016  81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWG 137
CYTB MTH00224
cytochrome b; Provisional
 1-137 9.18e-70

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 214.40  E-value: 9.18e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365812687   1 MATNLRKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLI 80
Cdd:MTH00224   1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 365812687  81 RNMHANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGILLLLLVMATAFVGYVLPWG 137
Cdd:MTH00224  81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWG 137
CYTB MTH00053
cytochrome b; Provisional
 1-137 3.89e-66

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 204.94  E-value: 3.89e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365812687   1 MATNLRKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLI 80
Cdd:MTH00053   1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 365812687  81 RNMHANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGILLLLLVMATAFVGYVLPWG 137
Cdd:MTH00053  81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWG 137
CYTB MTH00022
cytochrome b; Validated
 5-137 2.89e-65

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 202.62  E-value: 2.89e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365812687   5 LRKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMH 84
Cdd:MTH00022   3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 365812687  85 ANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGILLLLLVMATAFVGYVLPWG 137
Cdd:MTH00022  83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWG 135
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-137 5.08e-56

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 173.32  E-value: 5.08e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365812687  10 PMIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMHANGAS 89
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 365812687  90 IFFMCIYLHIGRGLYYGSY--LYKETWNTGILLLLLVMATAFVGYVLPWG 137
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWG 130
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-137 1.63e-49

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 156.39  E-value: 1.63e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365812687   19 FIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIFFMCIYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 365812687   99 IGRGLYYG--SYLYKETWNTGILLLLLVMATAFVGYVLPWG 137
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWG 121
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-137 4.39e-49

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 161.11  E-value: 4.39e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365812687  12 IKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIF 91
Cdd:COG1290   20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 365812687  92 FMCIYLHIGRGLYYGSylYKE----TWNTGILLLLLVMATAFVGYVLPWG 137
Cdd:COG1290  100 FAAVYLHMFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWD 147
CYTB MTH00033
cytochrome b; Provisional
 5-137 4.69e-49

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 160.87  E-value: 4.69e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365812687   5 LRKTHPMIKIinNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMH 84
Cdd:MTH00033   3 LRKTGLLEPV--NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVH 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 365812687  85 ANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGILLLLLVMATAFVGYVLPWG 137
Cdd:MTH00033  81 ANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWG 133
CYTB MTH00086
cytochrome b; Provisional
 13-137 2.80e-41

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 140.07  E-value: 2.80e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365812687  13 KIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIFF 92
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 365812687  93 MCIYLHIGRGLYYGSYLYKETWNTGILLLLLVMATAFVGYVLPWG 137
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWA 125
CYTB MTH00046
cytochrome b; Validated
 11-136 4.01e-31

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 113.54  E-value: 4.01e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365812687  11 MIKIINNSFIDLPSPSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMHANGASI 90
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 365812687  91 FFMCIYLHIGRGLYYGSYLYKETWNTGILLLLLVMATAFVGYVLPW 136
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPW 126
PRK03735 PRK03735
cytochrome b6; Provisional
 34-136 1.04e-22

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 89.00  E-value: 1.04e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365812687  34 FGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIFFMCIYLHIGRGLYYGSYLYKE- 112
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100
                 ....*....|....*....|....*
gi 365812687 113 -TWNTGILLLLLVMATAFVGYVLPW 136
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPW 148
petB CHL00070
cytochrome b6
 25-136 1.99e-17

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 74.76  E-value: 1.99e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 365812687  25 PSNISAWWNFGSLLGICLILQIITGIFLAMHYSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIFFMCIYLHIGRGLY 104
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110
                 ....*....|....*....|....*....|....
gi 365812687 105 YGSYLYKE--TWNTGILLLLLVMATAFVGYVLPW 136
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPW 140
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
89-137 9.95e-11

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 56.10  E-value: 9.95e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 365812687   89 SIFFMCIYLHIGRGLYYGSYLYKE--TWNTGILLLLLVMATAFVGYVLPWG 137
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDD 51
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH