NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|372120986|gb|AEX86762|]
View 

RNA polymerase beta, partial [Penicillium malachiteum]

Protein Classification

RNA_pol_B_RPB2 and RNA_pol_Rpb2_5 domain-containing protein( domain architecture ID 10518874)

RNA_pol_B_RPB2 and RNA_pol_Rpb2_5 domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Ricin_B_lectin super family cl47023
Ricin-type beta-trefoil lectin domain;
7-280 9.97e-71

Ricin-type beta-trefoil lectin domain;


The actual alignment was detected with superfamily member PRK08565:

Pssm-ID: 481363 [Multi-domain]  Cd Length: 1103  Bit Score: 237.16  E-value: 9.97e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372120986    7 REMYLNMGIKAATLTGGLKYALATGNWGeqkkaaSAKAGVSQVLSRYTFASSLSHLRRTNTPIGRDGKIAKPRQLHNTHW 86
Cdd:PRK08565  369 RKLDLRAIVRPDIITERIRHALATGNWV------GGRTGVSQLLDRTNYLSTLSHLRRVVSPLSRGQPHFEARDLHGTQW 442

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372120986   87 GLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDfmIQRNMEV--LEEFEPQVTPNATKVFVNGVWVGIHRDPSHLV 164
Cdd:PRK08565  443 GRICPFETPEGPNCGLVKNLALMAQISVGVDEEEVEE--ILYELGVvpVEEAREEEYISWSRVYLNGRLIGYHPDGEELA 520

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372120986  165 TTMQSLRRRNMISNEVSL--IRDIREREFKIFTDAGRVCRPLFVVDNdpksenaGSLVLNKDHIRKLeqdkdlpadldme 242
Cdd:PRK08565  521 EKIRELRRSGKISDEVNVayIETGEINEVYVNCDSGRVRRPLIVVEN-------GKPKLTREHVEKL------------- 580

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 372120986  243 erRERYFGWEGLVRSGAIEIVDAEEEETIMIVMTPEDL 280
Cdd:PRK08565  581 --KKGELTFDDLVKMGVIEYLDAEEEENAYVALDPEDL 616
RNA_pol_Rpb2_5 pfam04567
RNA polymerase Rpb2, domain 5; RNA polymerases catalyze the DNA dependent polymerization of ...
 251-319 8.47e-18

RNA polymerase Rpb2, domain 5; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 5, is also known as the external 2 domain.


:

Pssm-ID: 428013 [Multi-domain]  Cd Length: 53  Bit Score: 75.65  E-value: 8.47e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 372120986  251 WEGLVRSGAIEIVDAEEEETIMIVMTPEDLEISKQLQAGYAlpedetadpnkrvrsilsqRAHTWTHCE 319
Cdd:pfam04567   1 WSDLLREGVIEYLDAEEEETSMIAMTPEDLEESSREEREGP-------------------YAHTYTHCE 50
 
Name Accession Description Interval E-value
PRK08565 PRK08565
DNA-directed RNA polymerase subunit B; Provisional
 7-280 9.97e-71

DNA-directed RNA polymerase subunit B; Provisional


Pssm-ID: 236291 [Multi-domain]  Cd Length: 1103  Bit Score: 237.16  E-value: 9.97e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372120986    7 REMYLNMGIKAATLTGGLKYALATGNWGeqkkaaSAKAGVSQVLSRYTFASSLSHLRRTNTPIGRDGKIAKPRQLHNTHW 86
Cdd:PRK08565  369 RKLDLRAIVRPDIITERIRHALATGNWV------GGRTGVSQLLDRTNYLSTLSHLRRVVSPLSRGQPHFEARDLHGTQW 442

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372120986   87 GLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDfmIQRNMEV--LEEFEPQVTPNATKVFVNGVWVGIHRDPSHLV 164
Cdd:PRK08565  443 GRICPFETPEGPNCGLVKNLALMAQISVGVDEEEVEE--ILYELGVvpVEEAREEEYISWSRVYLNGRLIGYHPDGEELA 520

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372120986  165 TTMQSLRRRNMISNEVSL--IRDIREREFKIFTDAGRVCRPLFVVDNdpksenaGSLVLNKDHIRKLeqdkdlpadldme 242
Cdd:PRK08565  521 EKIRELRRSGKISDEVNVayIETGEINEVYVNCDSGRVRRPLIVVEN-------GKPKLTREHVEKL------------- 580

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 372120986  243 erRERYFGWEGLVRSGAIEIVDAEEEETIMIVMTPEDL 280
Cdd:PRK08565  581 --KKGELTFDDLVKMGVIEYLDAEEEENAYVALDPEDL 616
RNA_pol_B_RPB2 cd00653
RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. ...
 1-113 6.50e-42

RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase complex contains two related members of this family, in each case they are the two largest subunits.The clamp is a mobile structure that grips DNA during elongation.


Pssm-ID: 238353 [Multi-domain]  Cd Length: 866  Bit Score: 154.65  E-value: 6.50e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372120986   1 RCVETEREMYLNMGIKAATLTGGLKYALATGNWGeQKKAASAKAGVSQVLSRYTFASSLSHLRRTNT-PIGRDGKIAKPR 79
Cdd:cd00653  269 KQLSKKKDLTPQLLINSKPITSGIKEFLATGNWG-SKRFLMQRSGLSQVLDRLNPLSELSHKRRISSlGLFRERKGFEVR 347

                         90       100       110
                 ....*....|....*....|....*....|....
gi 372120986  80 QLHNTHWGLVCPAETPEGQACGLVKNLALMCYIT 113
Cdd:cd00653  348 DLHPSHWGRICPIETPEGENCGLVKNLALMARIS 381
RNA_pol_Rpb2_4 pfam04566
RNA polymerase Rpb2, domain 4; RNA polymerases catalyze the DNA dependent polymerization of ...
 147-208 3.98e-33

RNA polymerase Rpb2, domain 4; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 4, is also known as the external 2 domain.


Pssm-ID: 428012 [Multi-domain]  Cd Length: 62  Bit Score: 116.70  E-value: 3.98e-33
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 372120986  147 VFVNGVWVGIHRDPSHLVTTMQSLRRRNMISNEVSLIRDIREREFKIFTDAGRVCRPLFVVD 208
Cdd:pfam04566   1 VFLNGNLIGVHRDPEELVETLRKLRRSGKISEEVSIVRDIREKEVRINTDGGRVCRPLIIVE 62
RNA_pol_Rpb2_5 pfam04567
RNA polymerase Rpb2, domain 5; RNA polymerases catalyze the DNA dependent polymerization of ...
 251-319 8.47e-18

RNA polymerase Rpb2, domain 5; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 5, is also known as the external 2 domain.


Pssm-ID: 428013 [Multi-domain]  Cd Length: 53  Bit Score: 75.65  E-value: 8.47e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 372120986  251 WEGLVRSGAIEIVDAEEEETIMIVMTPEDLEISKQLQAGYAlpedetadpnkrvrsilsqRAHTWTHCE 319
Cdd:pfam04567   1 WSDLLREGVIEYLDAEEEETSMIAMTPEDLEESSREEREGP-------------------YAHTYTHCE 50
RpoB COG0085
DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA ...
 38-114 5.93e-16

DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA polymerase, beta subunit/140 kD subunit is part of the Pathway/BioSystem: RNA polymerase


Pssm-ID: 439855 [Multi-domain]  Cd Length: 1001  Bit Score: 78.61  E-value: 5.93e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372120986   38 KAASAKAGVSQVLSRYTFASSLSHLRRTNT----PIGRDgkiaKP----RQLHNTHWGLVCPAETPEGQACGLVKNLALM 109
Cdd:COG0085   363 KEFFGSSQLSQFMDQTNPLSELTHKRRLSAlgpgGLSRE----RAgfevRDVHPSHYGRMCPIETPEGPNIGLIGSLALY 438


                  ....*
gi 372120986  110 CYITV 114
Cdd:COG0085   439 ARVNE 443
 
Name Accession Description Interval E-value
PRK08565 PRK08565
DNA-directed RNA polymerase subunit B; Provisional
 7-280 9.97e-71

DNA-directed RNA polymerase subunit B; Provisional


Pssm-ID: 236291 [Multi-domain]  Cd Length: 1103  Bit Score: 237.16  E-value: 9.97e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372120986    7 REMYLNMGIKAATLTGGLKYALATGNWGeqkkaaSAKAGVSQVLSRYTFASSLSHLRRTNTPIGRDGKIAKPRQLHNTHW 86
Cdd:PRK08565  369 RKLDLRAIVRPDIITERIRHALATGNWV------GGRTGVSQLLDRTNYLSTLSHLRRVVSPLSRGQPHFEARDLHGTQW 442

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372120986   87 GLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDfmIQRNMEV--LEEFEPQVTPNATKVFVNGVWVGIHRDPSHLV 164
Cdd:PRK08565  443 GRICPFETPEGPNCGLVKNLALMAQISVGVDEEEVEE--ILYELGVvpVEEAREEEYISWSRVYLNGRLIGYHPDGEELA 520

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372120986  165 TTMQSLRRRNMISNEVSL--IRDIREREFKIFTDAGRVCRPLFVVDNdpksenaGSLVLNKDHIRKLeqdkdlpadldme 242
Cdd:PRK08565  521 EKIRELRRSGKISDEVNVayIETGEINEVYVNCDSGRVRRPLIVVEN-------GKPKLTREHVEKL------------- 580

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 372120986  243 erRERYFGWEGLVRSGAIEIVDAEEEETIMIVMTPEDL 280
Cdd:PRK08565  581 --KKGELTFDDLVKMGVIEYLDAEEEENAYVALDPEDL 616
RNA_pol_B_RPB2 cd00653
RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. ...
 1-113 6.50e-42

RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase complex contains two related members of this family, in each case they are the two largest subunits.The clamp is a mobile structure that grips DNA during elongation.


Pssm-ID: 238353 [Multi-domain]  Cd Length: 866  Bit Score: 154.65  E-value: 6.50e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372120986   1 RCVETEREMYLNMGIKAATLTGGLKYALATGNWGeQKKAASAKAGVSQVLSRYTFASSLSHLRRTNT-PIGRDGKIAKPR 79
Cdd:cd00653  269 KQLSKKKDLTPQLLINSKPITSGIKEFLATGNWG-SKRFLMQRSGLSQVLDRLNPLSELSHKRRISSlGLFRERKGFEVR 347

                         90       100       110
                 ....*....|....*....|....*....|....
gi 372120986  80 QLHNTHWGLVCPAETPEGQACGLVKNLALMCYIT 113
Cdd:cd00653  348 DLHPSHWGRICPIETPEGENCGLVKNLALMARIS 381
RNA_pol_Rpb2_4 pfam04566
RNA polymerase Rpb2, domain 4; RNA polymerases catalyze the DNA dependent polymerization of ...
 147-208 3.98e-33

RNA polymerase Rpb2, domain 4; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 4, is also known as the external 2 domain.


Pssm-ID: 428012 [Multi-domain]  Cd Length: 62  Bit Score: 116.70  E-value: 3.98e-33
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 372120986  147 VFVNGVWVGIHRDPSHLVTTMQSLRRRNMISNEVSLIRDIREREFKIFTDAGRVCRPLFVVD 208
Cdd:pfam04566   1 VFLNGNLIGVHRDPEELVETLRKLRRSGKISEEVSIVRDIREKEVRINTDGGRVCRPLIIVE 62
PRK09606 PRK09606
DNA-directed RNA polymerase subunit B''; Validated
 7-125 5.05e-32

DNA-directed RNA polymerase subunit B''; Validated


Pssm-ID: 236587 [Multi-domain]  Cd Length: 494  Bit Score: 124.29  E-value: 5.05e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372120986   7 REMYLNMGIKAATLTGGLKYALATGNWgeqkkaASAKAGVSQVLSRYTFASSLSHLRRTNTPIGRDGKIAKPRQLHNTHW 86
Cdd:PRK09606 372 RELSIKTAVRSDVLTERLEHAMATGNW------VGGRTGVSQLLDRTDYMATLSHLRRVVSPLSRSQPHFEARDLHPTQW 445

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 372120986  87 GLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFM 125
Cdd:PRK09606 446 GRICPSETPEGPNCGLVKNFAQMVEISTGEDEEEVKEIL 484
RNA_pol_Rpb2_3 pfam04565
RNA polymerase Rpb2, domain 3; RNA polymerases catalyze the DNA dependent polymerization of ...
 48-111 2.42e-31

RNA polymerase Rpb2, domain 3; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 3, s also known as the fork domain and is proximal to catalytic site.


Pssm-ID: 428011 [Multi-domain]  Cd Length: 67  Bit Score: 112.23  E-value: 2.42e-31
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 372120986   48 QVLSRYTFASSLSHLRRTNTPIG---RDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCY 111
Cdd:pfam04565   1 QVLDRTNYLSTLSHLRRVNSPRGglfREMKTTEVRDLHPSHWGRICPVETPEGPNCGLVKHLALYAR 67
PRK07225 PRK07225
DNA-directed RNA polymerase subunit B'; Validated
 145-289 4.18e-26

DNA-directed RNA polymerase subunit B'; Validated


Pssm-ID: 235972 [Multi-domain]  Cd Length: 605  Bit Score: 108.51  E-value: 4.18e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372120986 145 TKVFVNGVWVGIHRDPSHLVTTMQSLRRRNMISNEVSLIRDIREREFKIFTDAGRVCRPLFVVDNdpksenaGSLVLNKD 224
Cdd:PRK07225   5 AKVYVNGKLIGTHDDPEELVEEIREARRSGEISEEVNVSYKEETNEVIINTDAGRARRPLIVVEN-------GEPLLTEE 77

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 372120986 225 HIRKLEQDKdlpadldmeerreryFGWEGLVRSGAIEIVDAEEEETIMIVMTPED-------LEISKQLQAG 289
Cdd:PRK07225  78 HIEKLKNGE---------------LTFDDLVKQGVIEYLDAEEEENAYIAVYEEDlteehthLEIDPSLILG 134
RNA_pol_Rpb2_5 pfam04567
RNA polymerase Rpb2, domain 5; RNA polymerases catalyze the DNA dependent polymerization of ...
 251-319 8.47e-18

RNA polymerase Rpb2, domain 5; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 5, is also known as the external 2 domain.


Pssm-ID: 428013 [Multi-domain]  Cd Length: 53  Bit Score: 75.65  E-value: 8.47e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 372120986  251 WEGLVRSGAIEIVDAEEEETIMIVMTPEDLEISKQLQAGYAlpedetadpnkrvrsilsqRAHTWTHCE 319
Cdd:pfam04567   1 WSDLLREGVIEYLDAEEEETSMIAMTPEDLEESSREEREGP-------------------YAHTYTHCE 50
RpoB COG0085
DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA ...
 38-114 5.93e-16

DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA polymerase, beta subunit/140 kD subunit is part of the Pathway/BioSystem: RNA polymerase


Pssm-ID: 439855 [Multi-domain]  Cd Length: 1001  Bit Score: 78.61  E-value: 5.93e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372120986   38 KAASAKAGVSQVLSRYTFASSLSHLRRTNT----PIGRDgkiaKP----RQLHNTHWGLVCPAETPEGQACGLVKNLALM 109
Cdd:COG0085   363 KEFFGSSQLSQFMDQTNPLSELTHKRRLSAlgpgGLSRE----RAgfevRDVHPSHYGRMCPIETPEGPNIGLIGSLALY 438


                  ....*
gi 372120986  110 CYITV 114
Cdd:COG0085   439 ARVNE 443
PRK14844 PRK14844
DNA-directed RNA polymerase subunit beta/beta';
46-133 1.24e-07

DNA-directed RNA polymerase subunit beta/beta';


Pssm-ID: 173305 [Multi-domain]  Cd Length: 2836  Bit Score: 53.47  E-value: 1.24e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372120986   46 VSQVLSRYTFASSLSHLRRTNT--PIG--RDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYIT----VGTP 117
Cdd:PRK14844  532 LSQFMDQTNPLSEITHKRRLSAlgPGGltRERAGFEVRDVHPTHYGRICPIETPEGQNIGLINSLAIYARINkygfIESP 611

                          90
                  ....*....|....*.
gi 372120986  118 SEPIIDFMIQRNMEVL 133
Cdd:PRK14844  612 YRKVVNRVVTDQIEYL 627
PRK09603 PRK09603
DNA-directed RNA polymerase subunit beta/beta';
46-107 3.85e-06

DNA-directed RNA polymerase subunit beta/beta';


Pssm-ID: 181983 [Multi-domain]  Cd Length: 2890  Bit Score: 48.77  E-value: 3.85e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 372120986   46 VSQVLSRYTFASSLSHLRRTNTpIGRDGKIA-----KPRQLHNTHWGLVCPAETPEGQACGLVKNLA 107
Cdd:PRK09603  525 LSQFMDQTNPLSEVTHKRRLSA-LGEGGLVKdrvgfEARDVHPTHYGRICPIETPEGQNIGLINTLS 590
rpoB CHL00207
RNA polymerase beta subunit; Provisional
 45-107 5.70e-06

RNA polymerase beta subunit; Provisional


Pssm-ID: 214397 [Multi-domain]  Cd Length: 1077  Bit Score: 47.78  E-value: 5.70e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 372120986   45 GVSQvLSRYT----FASSLSHLRRTNT--PIGRDG-KIAKP-RQLHNTHWGLVCPAETPEGQACGLVKNLA 107
Cdd:CHL00207  362 GSSQ-LSQYMdqtnPLSELTHKRRISIlgPGGLDKdRISFAvRDIHPSHYGRICPIETPEGPNCGLIGSLA 431
rpoB PRK00405
DNA-directed RNA polymerase subunit beta; Reviewed
 79-107 8.09e-05

DNA-directed RNA polymerase subunit beta; Reviewed


Pssm-ID: 234749 [Multi-domain]  Cd Length: 1112  Bit Score: 44.32  E-value: 8.09e-05
                          10        20
                  ....*....|....*....|....*....
gi 372120986   79 RQLHNTHWGLVCPAETPEGQACGLVKNLA 107
Cdd:PRK00405  469 RDVHPTHYGRICPIETPEGPNIGLINSLA 497
rpoB CHL00001
RNA polymerase beta subunit
 47-107 3.52e-04

RNA polymerase beta subunit


Pssm-ID: 214330 [Multi-domain]  Cd Length: 1070  Bit Score: 42.20  E-value: 3.52e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 372120986   47 SQVLSRYTFASSLSHLRRTNT--PIGRDGKIA--KPRQLHNTHWGLVCPAETPEGQACGLVKNLA 107
Cdd:CHL00001  375 SQFLDQTNPLTEIVHGRKLSSlgPGGLTGRTAsfRVRDIHPSHYGRICPIDTSEGINAGLIGSLA 439
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH