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Conserved domains on  [gi|372120994|gb|AEX86766|]
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RNA polymerase beta, partial [Talaromyces dendriticus]

Protein Classification

DNA-directed RNA polymerase III subunit RPC2( domain architecture ID 10518874)

DNA-directed RNA polymerase III subunit RPC2 is the second largest core component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ricin_B_lectin super family cl47023
Ricin-type beta-trefoil lectin domain;
6-280 1.91e-73

Ricin-type beta-trefoil lectin domain;


The actual alignment was detected with superfamily member PRK08565:

Pssm-ID: 481363 [Multi-domain]  Cd Length: 1103  Bit Score: 244.87  E-value: 1.91e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372120994    6 NREVVLNVGLKPATLTGGLKYALATGNWGeqkkamSSKAGVSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 85
Cdd:PRK08565  368 GRKLDLRAIVRPDIITERIRHALATGNWV------GGRTGVSQLLDRTNYLSTLSHLRRVVSPLSRGQPHFEARDLHGTQ 441

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372120994   86 WGLVCPAETPEGQACGLVKNLALMCAITVGSPSEPIVDfmIQRNMEV--LEEFEPLVTPHATKVFVNGVWVGVHRDPAHL 163
Cdd:PRK08565  442 WGRICPFETPEGPNCGLVKNLALMAQISVGVDEEEVEE--ILYELGVvpVEEAREEEYISWSRVYLNGRLIGYHPDGEEL 519

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372120994  164 VSTVQSLRRRNMISHEVSlVRDIRDREFK---IFTDAGRVCRPLFVIDNdprsencGSLVLNKDHIRRLeadrelppdld 240
Cdd:PRK08565  520 AEKIRELRRSGKISDEVN-VAYIETGEINevyVNCDSGRVRRPLIVVEN-------GKPKLTREHVEKL----------- 580

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 372120994  241 peerREQYYGWDGLVKSGVIEYVDAEEEETIMIAMSPEDL 280
Cdd:PRK08565  581 ----KKGELTFDDLVKMGVIEYLDAEEEENAYVALDPEDL 616
RNA_pol_Rpb2_5 pfam04567
RNA polymerase Rpb2, domain 5; RNA polymerases catalyze the DNA dependent polymerization of ...
 251-318 2.77e-20

RNA polymerase Rpb2, domain 5; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 5, is also known as the external 2 domain.


:

Pssm-ID: 428013 [Multi-domain]  Cd Length: 53  Bit Score: 82.59  E-value: 2.77e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 372120994  251 WDGLVKSGVIEYVDAEEEETIMIAMSPEDLEISKQLQAGYVmpedssnpnkrvrsilsqRAHIWTHCE 318
Cdd:pfam04567   1 WSDLLREGVIEYLDAEEEETSMIAMTPEDLEESSREEREGP------------------YAHTYTHCE 50
 
Name Accession Description Interval E-value
PRK08565 PRK08565
DNA-directed RNA polymerase subunit B; Provisional
 6-280 1.91e-73

DNA-directed RNA polymerase subunit B; Provisional


Pssm-ID: 236291 [Multi-domain]  Cd Length: 1103  Bit Score: 244.87  E-value: 1.91e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372120994    6 NREVVLNVGLKPATLTGGLKYALATGNWGeqkkamSSKAGVSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 85
Cdd:PRK08565  368 GRKLDLRAIVRPDIITERIRHALATGNWV------GGRTGVSQLLDRTNYLSTLSHLRRVVSPLSRGQPHFEARDLHGTQ 441

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372120994   86 WGLVCPAETPEGQACGLVKNLALMCAITVGSPSEPIVDfmIQRNMEV--LEEFEPLVTPHATKVFVNGVWVGVHRDPAHL 163
Cdd:PRK08565  442 WGRICPFETPEGPNCGLVKNLALMAQISVGVDEEEVEE--ILYELGVvpVEEAREEEYISWSRVYLNGRLIGYHPDGEEL 519

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372120994  164 VSTVQSLRRRNMISHEVSlVRDIRDREFK---IFTDAGRVCRPLFVIDNdprsencGSLVLNKDHIRRLeadrelppdld 240
Cdd:PRK08565  520 AEKIRELRRSGKISDEVN-VAYIETGEINevyVNCDSGRVRRPLIVVEN-------GKPKLTREHVEKL----------- 580

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 372120994  241 peerREQYYGWDGLVKSGVIEYVDAEEEETIMIAMSPEDL 280
Cdd:PRK08565  581 ----KKGELTFDDLVKMGVIEYLDAEEEENAYVALDPEDL 616
RNA_pol_B_RPB2 cd00653
RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. ...
 1-113 1.64e-41

RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase complex contains two related members of this family, in each case they are the two largest subunits.The clamp is a mobile structure that grips DNA during elongation.


Pssm-ID: 238353 [Multi-domain]  Cd Length: 866  Bit Score: 153.49  E-value: 1.64e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372120994   1 RCVETNREVVLNVGLKPATLTGGLKYALATGNWGeQKKAMSSKAGVSQVLSRYTYASTLSHLRRTNT-PIGRDGKIAKPR 79
Cdd:cd00653  269 KQLSKKKDLTPQLLINSKPITSGIKEFLATGNWG-SKRFLMQRSGLSQVLDRLNPLSELSHKRRISSlGLFRERKGFEVR 347

                         90       100       110
                 ....*....|....*....|....*....|....
gi 372120994  80 QLHNTHWGLVCPAETPEGQACGLVKNLALMCAIT 113
Cdd:cd00653  348 DLHPSHWGRICPIETPEGENCGLVKNLALMARIS 381
RNA_pol_Rpb2_4 pfam04566
RNA polymerase Rpb2, domain 4; RNA polymerases catalyze the DNA dependent polymerization of ...
 147-208 2.31e-32

RNA polymerase Rpb2, domain 4; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 4, is also known as the external 2 domain.


Pssm-ID: 428012 [Multi-domain]  Cd Length: 62  Bit Score: 114.39  E-value: 2.31e-32
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 372120994  147 VFVNGVWVGVHRDPAHLVSTVQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVID 208
Cdd:pfam04566   1 VFLNGNLIGVHRDPEELVETLRKLRRSGKISEEVSIVRDIREKEVRINTDGGRVCRPLIIVE 62
RNA_pol_Rpb2_5 pfam04567
RNA polymerase Rpb2, domain 5; RNA polymerases catalyze the DNA dependent polymerization of ...
 251-318 2.77e-20

RNA polymerase Rpb2, domain 5; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 5, is also known as the external 2 domain.


Pssm-ID: 428013 [Multi-domain]  Cd Length: 53  Bit Score: 82.59  E-value: 2.77e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 372120994  251 WDGLVKSGVIEYVDAEEEETIMIAMSPEDLEISKQLQAGYVmpedssnpnkrvrsilsqRAHIWTHCE 318
Cdd:pfam04567   1 WSDLLREGVIEYLDAEEEETSMIAMTPEDLEESSREEREGP------------------YAHTYTHCE 50
RpoB COG0085
DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA ...
 37-114 1.40e-16

DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA polymerase, beta subunit/140 kD subunit is part of the Pathway/BioSystem: RNA polymerase


Pssm-ID: 439855 [Multi-domain]  Cd Length: 1001  Bit Score: 80.54  E-value: 1.40e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372120994   37 KKAMSSkAGVSQVLSRYTYASTLSHLRRTNT----PIGRDgkiaKP----RQLHNTHWGLVCPAETPEGQACGLVKNLAL 108
Cdd:COG0085   363 KEFFGS-SQLSQFMDQTNPLSELTHKRRLSAlgpgGLSRE----RAgfevRDVHPSHYGRMCPIETPEGPNIGLIGSLAL 437


                  ....*.
gi 372120994  109 MCAITV 114
Cdd:COG0085   438 YARVNE 443
 
Name Accession Description Interval E-value
PRK08565 PRK08565
DNA-directed RNA polymerase subunit B; Provisional
 6-280 1.91e-73

DNA-directed RNA polymerase subunit B; Provisional


Pssm-ID: 236291 [Multi-domain]  Cd Length: 1103  Bit Score: 244.87  E-value: 1.91e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372120994    6 NREVVLNVGLKPATLTGGLKYALATGNWGeqkkamSSKAGVSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 85
Cdd:PRK08565  368 GRKLDLRAIVRPDIITERIRHALATGNWV------GGRTGVSQLLDRTNYLSTLSHLRRVVSPLSRGQPHFEARDLHGTQ 441

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372120994   86 WGLVCPAETPEGQACGLVKNLALMCAITVGSPSEPIVDfmIQRNMEV--LEEFEPLVTPHATKVFVNGVWVGVHRDPAHL 163
Cdd:PRK08565  442 WGRICPFETPEGPNCGLVKNLALMAQISVGVDEEEVEE--ILYELGVvpVEEAREEEYISWSRVYLNGRLIGYHPDGEEL 519

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372120994  164 VSTVQSLRRRNMISHEVSlVRDIRDREFK---IFTDAGRVCRPLFVIDNdprsencGSLVLNKDHIRRLeadrelppdld 240
Cdd:PRK08565  520 AEKIRELRRSGKISDEVN-VAYIETGEINevyVNCDSGRVRRPLIVVEN-------GKPKLTREHVEKL----------- 580

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 372120994  241 peerREQYYGWDGLVKSGVIEYVDAEEEETIMIAMSPEDL 280
Cdd:PRK08565  581 ----KKGELTFDDLVKMGVIEYLDAEEEENAYVALDPEDL 616
RNA_pol_B_RPB2 cd00653
RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. ...
 1-113 1.64e-41

RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase complex contains two related members of this family, in each case they are the two largest subunits.The clamp is a mobile structure that grips DNA during elongation.


Pssm-ID: 238353 [Multi-domain]  Cd Length: 866  Bit Score: 153.49  E-value: 1.64e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372120994   1 RCVETNREVVLNVGLKPATLTGGLKYALATGNWGeQKKAMSSKAGVSQVLSRYTYASTLSHLRRTNT-PIGRDGKIAKPR 79
Cdd:cd00653  269 KQLSKKKDLTPQLLINSKPITSGIKEFLATGNWG-SKRFLMQRSGLSQVLDRLNPLSELSHKRRISSlGLFRERKGFEVR 347

                         90       100       110
                 ....*....|....*....|....*....|....
gi 372120994  80 QLHNTHWGLVCPAETPEGQACGLVKNLALMCAIT 113
Cdd:cd00653  348 DLHPSHWGRICPIETPEGENCGLVKNLALMARIS 381
PRK09606 PRK09606
DNA-directed RNA polymerase subunit B''; Validated
 6-125 2.28e-33

DNA-directed RNA polymerase subunit B''; Validated


Pssm-ID: 236587 [Multi-domain]  Cd Length: 494  Bit Score: 128.14  E-value: 2.28e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372120994   6 NREVVLNVGLKPATLTGGLKYALATGNWgeqkkaMSSKAGVSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTH 85
Cdd:PRK09606 371 NRELSIKTAVRSDVLTERLEHAMATGNW------VGGRTGVSQLLDRTDYMATLSHLRRVVSPLSRSQPHFEARDLHPTQ 444

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 372120994  86 WGLVCPAETPEGQACGLVKNLALMCAITVGSPSEPIVDFM 125
Cdd:PRK09606 445 WGRICPSETPEGPNCGLVKNFAQMVEISTGEDEEEVKEIL 484
RNA_pol_Rpb2_4 pfam04566
RNA polymerase Rpb2, domain 4; RNA polymerases catalyze the DNA dependent polymerization of ...
 147-208 2.31e-32

RNA polymerase Rpb2, domain 4; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 4, is also known as the external 2 domain.


Pssm-ID: 428012 [Multi-domain]  Cd Length: 62  Bit Score: 114.39  E-value: 2.31e-32
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 372120994  147 VFVNGVWVGVHRDPAHLVSTVQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVID 208
Cdd:pfam04566   1 VFLNGNLIGVHRDPEELVETLRKLRRSGKISEEVSIVRDIREKEVRINTDGGRVCRPLIIVE 62
RNA_pol_Rpb2_3 pfam04565
RNA polymerase Rpb2, domain 3; RNA polymerases catalyze the DNA dependent polymerization of ...
 48-110 1.35e-31

RNA polymerase Rpb2, domain 3; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 3, s also known as the fork domain and is proximal to catalytic site.


Pssm-ID: 428011 [Multi-domain]  Cd Length: 67  Bit Score: 112.62  E-value: 1.35e-31
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 372120994   48 QVLSRYTYASTLSHLRRTNTPIG---RDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMC 110
Cdd:pfam04565   1 QVLDRTNYLSTLSHLRRVNSPRGglfREMKTTEVRDLHPSHWGRICPVETPEGPNCGLVKHLALYA 66
PRK07225 PRK07225
DNA-directed RNA polymerase subunit B'; Validated
 145-289 1.37e-28

DNA-directed RNA polymerase subunit B'; Validated


Pssm-ID: 235972 [Multi-domain]  Cd Length: 605  Bit Score: 115.44  E-value: 1.37e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372120994 145 TKVFVNGVWVGVHRDPAHLVSTVQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNdprsencGSLVLNKD 224
Cdd:PRK07225   5 AKVYVNGKLIGTHDDPEELVEEIREARRSGEISEEVNVSYKEETNEVIINTDAGRARRPLIVVEN-------GEPLLTEE 77

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 372120994 225 HIRRLEaDRELppdldpeerreqyyGWDGLVKSGVIEYVDAEEEETIMIAMSPED-------LEISKQLQAG 289
Cdd:PRK07225  78 HIEKLK-NGEL--------------TFDDLVKQGVIEYLDAEEEENAYIAVYEEDlteehthLEIDPSLILG 134
RNA_pol_Rpb2_5 pfam04567
RNA polymerase Rpb2, domain 5; RNA polymerases catalyze the DNA dependent polymerization of ...
 251-318 2.77e-20

RNA polymerase Rpb2, domain 5; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 5, is also known as the external 2 domain.


Pssm-ID: 428013 [Multi-domain]  Cd Length: 53  Bit Score: 82.59  E-value: 2.77e-20
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 372120994  251 WDGLVKSGVIEYVDAEEEETIMIAMSPEDLEISKQLQAGYVmpedssnpnkrvrsilsqRAHIWTHCE 318
Cdd:pfam04567   1 WSDLLREGVIEYLDAEEEETSMIAMTPEDLEESSREEREGP------------------YAHTYTHCE 50
RpoB COG0085
DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA ...
 37-114 1.40e-16

DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA polymerase, beta subunit/140 kD subunit is part of the Pathway/BioSystem: RNA polymerase


Pssm-ID: 439855 [Multi-domain]  Cd Length: 1001  Bit Score: 80.54  E-value: 1.40e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372120994   37 KKAMSSkAGVSQVLSRYTYASTLSHLRRTNT----PIGRDgkiaKP----RQLHNTHWGLVCPAETPEGQACGLVKNLAL 108
Cdd:COG0085   363 KEFFGS-SQLSQFMDQTNPLSELTHKRRLSAlgpgGLSRE----RAgfevRDVHPSHYGRMCPIETPEGPNIGLIGSLAL 437


                  ....*.
gi 372120994  109 MCAITV 114
Cdd:COG0085   438 YARVNE 443
PRK14844 PRK14844
DNA-directed RNA polymerase subunit beta/beta';
46-133 4.19e-08

DNA-directed RNA polymerase subunit beta/beta';


Pssm-ID: 173305 [Multi-domain]  Cd Length: 2836  Bit Score: 54.63  E-value: 4.19e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372120994   46 VSQVLSRYTYASTLSHLRRTNT--PIG--RDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCAIT----VGSP 117
Cdd:PRK14844  532 LSQFMDQTNPLSEITHKRRLSAlgPGGltRERAGFEVRDVHPTHYGRICPIETPEGQNIGLINSLAIYARINkygfIESP 611

                          90
                  ....*....|....*.
gi 372120994  118 SEPIVDFMIQRNMEVL 133
Cdd:PRK14844  612 YRKVVNRVVTDQIEYL 627
PRK09603 PRK09603
DNA-directed RNA polymerase subunit beta/beta';
46-151 1.33e-06

DNA-directed RNA polymerase subunit beta/beta';


Pssm-ID: 181983 [Multi-domain]  Cd Length: 2890  Bit Score: 49.92  E-value: 1.33e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 372120994   46 VSQVLSRYTYASTLSHLRRTNTpIGRDGKIA-----KPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCAIT----VGS 116
Cdd:PRK09603  525 LSQFMDQTNPLSEVTHKRRLSA-LGEGGLVKdrvgfEARDVHPTHYGRICPIETPEGQNIGLINTLSTFTRVNdlgfIEA 603

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 372120994  117 PSEPIVDFMIQRNMEVL---EEFEPLVTPHATKVFVNG 151
Cdd:PRK09603  604 PYKKVVDGKVVGETIYLtaiQEDSHIIAPASTPIDEEG 641
rpoB CHL00207
RNA polymerase beta subunit; Provisional
 45-112 1.59e-05

RNA polymerase beta subunit; Provisional


Pssm-ID: 214397 [Multi-domain]  Cd Length: 1077  Bit Score: 46.62  E-value: 1.59e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 372120994   45 GVSQvLSRYTYA----STLSHLRRTNT--PIGRDG-KIAKP-RQLHNTHWGLVCPAETPEGQACGLVKNLAlMCAI 112
Cdd:CHL00207  362 GSSQ-LSQYMDQtnplSELTHKRRISIlgPGGLDKdRISFAvRDIHPSHYGRICPIETPEGPNCGLIGSLA-TNAR 435
rpoB PRK00405
DNA-directed RNA polymerase subunit beta; Reviewed
 79-107 7.69e-05

DNA-directed RNA polymerase subunit beta; Reviewed


Pssm-ID: 234749 [Multi-domain]  Cd Length: 1112  Bit Score: 44.32  E-value: 7.69e-05
                          10        20
                  ....*....|....*....|....*....
gi 372120994   79 RQLHNTHWGLVCPAETPEGQACGLVKNLA 107
Cdd:PRK00405  469 RDVHPTHYGRICPIETPEGPNIGLINSLA 497
rpoB CHL00001
RNA polymerase beta subunit
 47-107 3.41e-04

RNA polymerase beta subunit


Pssm-ID: 214330 [Multi-domain]  Cd Length: 1070  Bit Score: 42.20  E-value: 3.41e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 372120994   47 SQVLSRYTYASTLSHLRRTNT--PIGRDGKIA--KPRQLHNTHWGLVCPAETPEGQACGLVKNLA 107
Cdd:CHL00001  375 SQFLDQTNPLTEIVHGRKLSSlgPGGLTGRTAsfRVRDIHPSHYGRICPIDTSEGINAGLIGSLA 439
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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